PROSITE logo

PROSITE entry PS00588


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] FLAGELLA_BB_ROD
Accession [info] PS00588
Entry type [info] PATTERN
Date [info] 01-DEC-1991 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00508

Name and characterization of the entry

Description [info] Flagella basal body rod proteins signature.
Pattern [info] 
[GTARYQ]-x-{R}-x(7)-[LIVMYSTA](2)-[GSTA]-[STADEN]-N-[LIVM]-[SAN]-N-x-
[SADENFR]-[STV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 76 in 76 different sequences
Number of true positive hits 72 in 72 different sequences
Number of 'unknown' hits 0
Number of false positive hits 4 in 4 different sequences
Number of false negative sequences 12
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 94.74 %
Recall (true positives / (true positives + false negatives)) 85.71 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 72 sequences 

FLA1_BORBU  (P11089), FLGB_AERHH  (A0KM45), FLGB_AERHY  (Q8GLP8), 

FLGB_AGRFC  (Q44335), FLGB_BACSU  (P24500), FLGB_BORBU  (P52608), 
FLGB_BORHE  (P70910), FLGB_BUCAI  (P57419), FLGB_CERS1  (A3PKG3), 
FLGB_CERS4  (Q3J1S6), FLGB_CERSK  (B9KJG2), FLGB_CERSP  (Q8VLR6), 
FLGB_ECOL6  (P0ABX0), FLGB_ECOLI  (P0ABW9), FLGB_PROMH  (B4EYN9), 
FLGB_PROMI  (P96972), FLGB_SALTY  (P16437), FLGB_SHIFL  (P0ABX1), 
FLGB_YEREN  (Q56893), FLGB_YERRU  (C8BKB7), FLGC_AGRFC  (Q44336), 
FLGC_AQUAE  (O67243), FLGC_BACSU  (P24501), FLGC_BORBU  (Q57466), 
FLGC_BORHE  (P70911), FLGC_BUCAI  (P57420), FLGC_BUCAP  (Q8K9K8), 
FLGC_ECO57  (P0ABX4), FLGC_ECOL6  (P0ABX3), FLGC_ECOLI  (P0ABX2), 
FLGC_RHIME  (Q52944), FLGC_SALTI  (P0A1I8), FLGC_SALTY  (P0A1I7), 
FLGC_YEREN  (Q56894), FLGE_AQUAE  (O67711), FLGE_BORBU  (Q44767), 
FLGE_BRUAB  (O52070), FLGE_BRUME  (Q8YDL6), FLGE_BRUSU  (Q8FUS9), 
FLGE_BUCAI  (P57422), FLGE_BUCAP  (Q8K9K6), FLGE_CAUVC  (P35806), 
FLGE_ECOLI  (P75937), FLGE_RHIME  (Q9X5Y0), FLGE_SALTI  (P0A1J2), 
FLGE_SALTY  (P0A1J1), FLGE_TREPA  (O07884), FLGE_TREPH  (Q56326), 
FLGF_BUCAI  (P57423), FLGF_BUCAP  (Q8K9K5), FLGF_CAUVC  (Q06171), 
FLGF_ECOLI  (P75938), FLGF_RHILO  (Q98HE3), FLGF_SALTY  (P16323), 
FLGG_AGRFC  (Q44338), FLGG_BACSU  (P23446), FLGG_BORBU  (O51715), 
FLGG_BUCAI  (P57424), FLGG_BUCAP  (Q8K9K4), FLGG_BUCBP  (Q89AH7), 
FLGG_CAUVC  (Q06172), FLGG_ECO57  (P0ABX7), FLGG_ECOL6  (P0ABX6), 
FLGG_ECOLI  (P0ABX5), FLGG_RHIME  (Q52946), FLGG_SALTI  (P0A1J4), 
FLGG_SALTY  (P0A1J3), FLGK_BACSU  (P39810), FLGK_SALTI  (P0A1J6), 
FLGK_SALTY  (P0A1J5), FLHO_BACSU  (P39752), FLHP_BACSU  (P39753)
» more

UniProtKB/Swiss-Prot
False negative sequences		 12 sequences 

FLGB_AQUAE  (O67244), FLGB_BUCAP  (Q8K9K9), FLGB_BUCBP  (Q89AI0), 

FLGC_BUCBP  (Q89AH9), FLGE_HELPJ  (Q9ZKY0), FLGE_HELPY  (P50610), 
FLGF_BUCBP  (Q89AH8), FLGF_RHIME  (O54248), FLGK_BORBU  (P70859), 
FLGK_BUCAI  (P57428), FLGK_BUCAP  (Q8K9K0), FLGK_ECOLI  (P33235)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

FLGE_HELMU  (P50611)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			4 sequences
			


			
C3H38_ARATH (Q9LIH5), LOLA5_DROME (Q9V5M6), SCR_PEA (Q9AVK4), 

			
TAF12_SCHPO (O13722)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			14 PDB
			


			3A69; 5WRH; 6JZR; 6JZT; 6K3I; 6K9Q; 6KFK; 7BIN; 7CBM; 7CG0; 7CGB; 7CGO; 
			
				7E80; 7E82
			
			

			» more