PROSITE entry PS00588
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General information about the entry
Entry name [info] | FLAGELLA_BB_ROD |
Accession [info] | PS00588 |
Entry type [info] | PATTERN |
Date [info] |
01-DEC-1991 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00508 |
Name and characterization of the entry
Description [info] | Flagella basal body rod proteins signature. |
Pattern [info] |
[GTARYQ]-x-{R}-x(7)-[LIVMYSTA](2)-[GSTA]-[STADEN]-N-[LIVM]-[SAN]-N-x- [SADENFR]-[STV]. |
Numerical results [info]
Total number of hits | 76 in 76 different sequences |
Number of true positive hits | 72 in 72 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 4 in 4 different sequences |
Number of false negative sequences | 12 |
Number of 'partial' sequences | 1 |
Precision (true positives / (true positives + false positives)) | 94.74 % |
Recall (true positives / (true positives + false negatives)) | 85.71 % |
Comments [info]
Taxonomic range [info] | Bacteriophages, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
72 sequences
FLA1_BORBU (P11089), FLGB_AERHH (A0KM45), FLGB_AERHY (Q8GLP8), FLGB_AGRFC (Q44335), FLGB_BACSU (P24500), FLGB_BORBU (P52608), FLGB_BORHE (P70910), FLGB_BUCAI (P57419), FLGB_CERS1 (A3PKG3), FLGB_CERS4 (Q3J1S6), FLGB_CERSK (B9KJG2), FLGB_CERSP (Q8VLR6), FLGB_ECOL6 (P0ABX0), FLGB_ECOLI (P0ABW9), FLGB_PROMH (B4EYN9), FLGB_PROMI (P96972), FLGB_SALTY (P16437), FLGB_SHIFL (P0ABX1), FLGB_YEREN (Q56893), FLGB_YERRU (C8BKB7), FLGC_AGRFC (Q44336), FLGC_AQUAE (O67243), FLGC_BACSU (P24501), FLGC_BORBU (Q57466), FLGC_BORHE (P70911), FLGC_BUCAI (P57420), FLGC_BUCAP (Q8K9K8), FLGC_ECO57 (P0ABX4), FLGC_ECOL6 (P0ABX3), FLGC_ECOLI (P0ABX2), FLGC_RHIME (Q52944), FLGC_SALTI (P0A1I8), FLGC_SALTY (P0A1I7), FLGC_YEREN (Q56894), FLGE_AQUAE (O67711), FLGE_BORBU (Q44767), FLGE_BRUAB (O52070), FLGE_BRUME (Q8YDL6), FLGE_BRUSU (Q8FUS9), FLGE_BUCAI (P57422), FLGE_BUCAP (Q8K9K6), FLGE_CAUVC (P35806), FLGE_ECOLI (P75937), FLGE_RHIME (Q9X5Y0), FLGE_SALTI (P0A1J2), FLGE_SALTY (P0A1J1), FLGE_TREPA (O07884), FLGE_TREPH (Q56326), FLGF_BUCAI (P57423), FLGF_BUCAP (Q8K9K5), FLGF_CAUVC (Q06171), FLGF_ECOLI (P75938), FLGF_RHILO (Q98HE3), FLGF_SALTY (P16323), FLGG_AGRFC (Q44338), FLGG_BACSU (P23446), FLGG_BORBU (O51715), FLGG_BUCAI (P57424), FLGG_BUCAP (Q8K9K4), FLGG_BUCBP (Q89AH7), FLGG_CAUVC (Q06172), FLGG_ECO57 (P0ABX7), FLGG_ECOL6 (P0ABX6), FLGG_ECOLI (P0ABX5), FLGG_RHIME (Q52946), FLGG_SALTI (P0A1J4), FLGG_SALTY (P0A1J3), FLGK_BACSU (P39810), FLGK_SALTI (P0A1J6), FLGK_SALTY (P0A1J5), FLHO_BACSU (P39752), FLHP_BACSU (P39753)» more
|
UniProtKB/Swiss-Prot False negative sequences |
12 sequences
FLGB_AQUAE (O67244), FLGB_BUCAP (Q8K9K9), FLGB_BUCBP (Q89AI0), FLGC_BUCBP (Q89AH9), FLGE_HELPJ (Q9ZKY0), FLGE_HELPY (P50610), FLGF_BUCBP (Q89AH8), FLGF_RHIME (O54248), FLGK_BORBU (P70859), FLGK_BUCAI (P57428), FLGK_BUCAP (Q8K9K0), FLGK_ECOLI (P33235)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
FLGE_HELMU (P50611) |
UniProtKB/Swiss-Prot False positive sequences |
4 sequences
C3H38_ARATH (Q9LIH5), LOLA5_DROME (Q9V5M6), SCR_PEA (Q9AVK4), TAF12_SCHPO (O13722)» more |
PDB [Detailed view] |
14 PDB
3A69; 5WRH; 6JZR; 6JZT; 6K3I; 6K9Q; 6KFK; 7BIN; 7CBM; 7CG0; 7CGB; 7CGO; 7E80; 7E82 » more |