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PROSITE entry PS00588


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General information about the entry

Entry name [info] FLAGELLA_BB_ROD
Accession [info] PS00588
Entry type [info] PATTERN
Date [info] 01-DEC-1991 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00508

Name and characterization of the entry

Description [info] Flagella basal body rod proteins signature.
Pattern [info] 
[GTARYQ]-x-{R}-x(7)-[LIVMYSTA](2)-[GSTA]-[STADEN]-N-[LIVM]-[SAN]-N-x-
[SADENFR]-[STV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.


Total number of hits 76 in 76 different sequences
Number of true positive hits 72 in 72 different sequences
Number of 'unknown' hits 0
Number of false positive hits 4 in 4 different sequences
Number of false negative sequences 12
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 94.74 %
Recall (true positives / (true positives + false negatives)) 85.71 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 72 sequences 

FLA1_BORBU  (P11089), FLGB_AERHH  (A0KM45), FLGB_AERHY  (Q8GLP8), 

FLGB_AGRFC  (Q44335), FLGB_BACSU  (P24500), FLGB_BORBU  (P52608), 
FLGB_BORHE  (P70910), FLGB_BUCAI  (P57419), FLGB_CERS1  (A3PKG3), 
FLGB_CERS4  (Q3J1S6), FLGB_CERSK  (B9KJG2), FLGB_CERSP  (Q8VLR6), 
FLGB_ECOL6  (P0ABX0), FLGB_ECOLI  (P0ABW9), FLGB_PROMH  (B4EYN9), 
FLGB_PROMI  (P96972), FLGB_SALTY  (P16437), FLGB_SHIFL  (P0ABX1), 
FLGB_YEREN  (Q56893), FLGB_YERRU  (C8BKB7), FLGC_AGRFC  (Q44336), 
FLGC_AQUAE  (O67243), FLGC_BACSU  (P24501), FLGC_BORBU  (Q57466), 
FLGC_BORHE  (P70911), FLGC_BUCAI  (P57420), FLGC_BUCAP  (Q8K9K8), 
FLGC_ECO57  (P0ABX4), FLGC_ECOL6  (P0ABX3), FLGC_ECOLI  (P0ABX2), 
FLGC_RHIME  (Q52944), FLGC_SALTI  (P0A1I8), FLGC_SALTY  (P0A1I7), 
FLGC_YEREN  (Q56894), FLGE_AQUAE  (O67711), FLGE_BORBU  (Q44767), 
FLGE_BRUAB  (O52070), FLGE_BRUME  (Q8YDL6), FLGE_BRUSU  (Q8FUS9), 
FLGE_BUCAI  (P57422), FLGE_BUCAP  (Q8K9K6), FLGE_CAUVC  (P35806), 
FLGE_ECOLI  (P75937), FLGE_RHIME  (Q9X5Y0), FLGE_SALTI  (P0A1J2), 
FLGE_SALTY  (P0A1J1), FLGE_TREPA  (O07884), FLGE_TREPH  (Q56326), 
FLGF_BUCAI  (P57423), FLGF_BUCAP  (Q8K9K5), FLGF_CAUVC  (Q06171), 
FLGF_ECOLI  (P75938), FLGF_RHILO  (Q98HE3), FLGF_SALTY  (P16323), 
FLGG_AGRFC  (Q44338), FLGG_BACSU  (P23446), FLGG_BORBU  (O51715), 
FLGG_BUCAI  (P57424), FLGG_BUCAP  (Q8K9K4), FLGG_BUCBP  (Q89AH7), 
FLGG_CAUVC  (Q06172), FLGG_ECO57  (P0ABX7), FLGG_ECOL6  (P0ABX6), 
FLGG_ECOLI  (P0ABX5), FLGG_RHIME  (Q52946), FLGG_SALTI  (P0A1J4), 
FLGG_SALTY  (P0A1J3), FLGK_BACSU  (P39810), FLGK_SALTI  (P0A1J6), 
FLGK_SALTY  (P0A1J5), FLHO_BACSU  (P39752), FLHP_BACSU  (P39753)
» more

UniProtKB/Swiss-Prot
False negative sequences		 12 sequences 

FLGB_AQUAE  (O67244), FLGB_BUCAP  (Q8K9K9), FLGB_BUCBP  (Q89AI0), 

FLGC_BUCBP  (Q89AH9), FLGE_HELPJ  (Q9ZKY0), FLGE_HELPY  (P50610), 
FLGF_BUCBP  (Q89AH8), FLGF_RHIME  (O54248), FLGK_BORBU  (P70859), 
FLGK_BUCAI  (P57428), FLGK_BUCAP  (Q8K9K0), FLGK_ECOLI  (P33235)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

FLGE_HELMU  (P50611)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			4 sequences
			


			
C3H38_ARATH (Q9LIH5), LOLA5_DROME (Q9V5M6), SCR_PEA (Q9AVK4), 

			
TAF12_SCHPO (O13722)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			27 PDB
			


			3A69; 5WRH; 6JZR; 6JZT; 6K3I; 6K9Q; 6KFK; 7BIN; 7CBM; 7CG0; 7CGB; 7CGO; 
			
				7E80; 7E82; 8WK3; 8WK4; 8WKI; 8WKK; 8WKQ; 8WL2; 8WLH; 8WLN; 8WLP; 8WLQ; 
				8WLT; 8WO5; 8WOE
			
			

			» more