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Entry: PS00597

General information about the entry

Entry name [info] PLANT_LTP
Accession [info] PS00597
Entry type [info] PATTERN
Date [info] 01-DEC-1991 CREATED;
01-DEC-2004 DATA UPDATE;
18-SEP-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC00516

Name and characterization of the entry

Description [info] Plant lipid transfer proteins signature.
Pattern [info] 
[LIVM]-[PA]-x(2)-C-x(1,2)-[LIVM]-x(1,2)-[LIVMST]-x-[LIVMFY]-x(1,2)-
[LIVMF]-[STRD]-x(3)-[DN]-C-x(2)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_08 which contains 560'823 sequence entries.


Total number of hits 89 in 89 different sequences
Number of true positive hits 89 in 89 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 24
Number of 'partial' sequences 16
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 78.76 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] disulfide at position 4
Site [info] disulfide at position 16
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 89 sequences 

LTP1_MORNI  (P85894    ), NLT11_PARJU (P43217    ), NLT12_PARJU (O04404    ), 

NLT13_PARJU (Q40905    ), NLT21_PARJU (P55958    ), NLT22_PARJU (O04403    ), 
NLT2A_ORYSJ (Q7XJ39    ), NLT2B_ORYSJ (Q2QYL2    ), NLT41_HORVU (Q43767    ), 
NLT42_HORVU (Q43875    ), NLT43_HORVU (Q42842    ), NLTP1_AMAHP (P83167    ), 
NLTP1_APIGR (E6Y8S8    ), NLTP1_ARATH (Q42589    ), NLTP1_BRANA (Q42614    ), 
NLTP1_GOSHI (Q42762    ), NLTP1_HORVU (P07597    ), NLTP1_LENCU (A0AT28    ), 
NLTP1_ORYSI (A2ZHF1    ), NLTP1_ORYSJ (Q0IQK9    ), NLTP1_PEA   (A0A161AT60), 
NLTP1_PRUAR (P81651    ), NLTP1_PRUDO (P82534    ), NLTP1_PRUDU (Q43017    ), 
NLTP1_PRUPE (P81402    ), NLTP1_SOLLC (P27056    ), NLTP1_SOLPN (O24037    ), 
NLTP1_SORBI (Q43193    ), NLTP1_TOBAC (Q42952    ), NLTP1_VIGRR (P83434    ), 
NLTP1_WHEAT (P24296    ), NLTP2_ARATH (Q9S7I3    ), NLTP2_BRANA (Q42615    ), 
NLTP2_GOSHI (Q43129    ), NLTP2_LENCU (A0AT29    ), NLTP2_ORYSI (A2ZAT0    ), 
NLTP2_PEA   (A0A158V755), NLTP2_SOLCI (Q3YMR2    ), NLTP2_SOLLC (P93224    ), 
NLTP2_SOLPN (O24038    ), NLTP2_SORBI (Q43194    ), NLTP2_TOBAC (Q03461    ), 
NLTP3_ARATH (Q9LLR7    ), NLTP3_BRANA (Q42616    ), NLTP3_HORVU (Q43766    ), 
NLTP3_LENCU (A0AT30    ), NLTP3_ORYSI (A2ZAS9    ), NLTP3_ORYSJ (Q2QYL3    ), 
NLTP3_PEA   (A0A158V976), NLTP3_PRUDU (Q43019    ), NLTP3_VITSX (P80273    ), 
NLTP3_WHEAT (Q84N29    ), NLTP4_ARATH (Q9LLR6    ), NLTP4_LENCU (A0AT33    ), 
NLTP4_ORYSJ (O65091    ), NLTP5_ARATH (Q9XFS7    ), NLTP5_LENCU (A0AT31    ), 
NLTP5_VITSX (P85105    ), NLTP6_ARATH (Q9LDB4    ), NLTP6_GOSHI (O24418    ), 
NLTP6_LENCU (A0AT32    ), NLTP8_HORVU (Q43871    ), NLTPA_ARATH (Q9LZV9    ), 
NLTPA_BRAOT (Q42641    ), NLTPA_RICCO (P10973    ), NLTPB_ARATH (Q2V3C1    ), 
NLTPB_BRAOT (Q42642    ), NLTPB_RICCO (P10974    ), NLTPC_ARATH (Q9SCZ0    ), 
NLTPC_RICCO (P10975    ), NLTPD_BRAOT (Q43304    ), NLTPD_RICCO (Q43119    ), 
NLTP_AMACA  (P80450    ), NLTP_ANEGR  (A0A0B4JDK1), NLTP_BETVU  (Q43748    ), 
NLTP_CICAR  (O23758    ), NLTP_CORAV  (Q9ATH2    ), NLTP_DAUCA  (P27631    ), 
NLTP_ELECO  (P23802    ), NLTP_GERHY  (Q39794    ), NLTP_LACSA  (A0A2J6KL39), 
NLTP_LYCBA  (B3A0N2    ), NLTP_MAIZE  (P19656    ), NLTP_MALDO  (Q9M5X7    ), 
NLTP_PINTA  (Q41073    ), NLTP_PRUAV  (Q9M5X8    ), NLTP_PYRCO  (Q9M5X6    ), 
NLTP_SPIOL  (P10976    ), SCA_LILLO   (Q9SW93    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 24 sequences 

ATA7_ARATH  (F4JL89    ), BLT4_HORVU  (P25307    ), C4_ORYSJ    (Q6ZFW0    ), 

C6_ORYSJ    (Q2R222    ), LTPG1_ARATH (Q9C7F7    ), LTPG2_ARATH (Q9LZH5    ), 
NLT2G_WHEAT (P82900    ), NLT2P_WHEAT (P82901    ), NLTL1_ORYSJ (Q6ASY2    ), 
NLTP1_ACTDE (P86137    ), NLTP1_HELAN (P82007    ), NLTP2_ACTDE (P85206    ), 
NLTP2_APIGA (P86809    ), NLTP2_HORVU (P20145    ), NLTP2_MAIZE (P83506    ), 
NLTP2_PRUAR (P82353    ), NLTP7_ARATH (Q9ZUK6    ), NLTP8_ARATH (Q9ZPW9    ), 
NLTP9_ARATH (Q6AWW0    ), NLTPD_ARATH (A8MQA2    ), NLTPE_ARATH (Q9FIT2    ), 
NLTPF_ARATH (Q9M0T1    ), NLTP_PEGHA  (B3EWH4    ), NLTP_VIGUN  (Q43681    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 16 sequences 

AFP5_MALPA  (P83139    ), NLTP1_ACTCH (P85204    ), NLTP1_NIGSA (P86527    ), 

NLTP1_VITSX (P80275    ), NLTP2_VITSX (P33556    ), NLTP2_WHEAT (P39085    ), 
NLTP3_SOLLC (P86417    ), NLTP4_VITSX (P80274    ), NLTPB_WHEAT (P26913    ), 
NLTP_ARTVU  (P0C088    ), NLTP_CANSA  (P86838    ), NLTP_CITLI  (P84160    ), 
NLTP_CITSI  (P84161    ), NLTP_MUSAC  (P86333    ), NLTP_PINPI  (P26912    ), 
NLTP_RAPSA  (P29420    )
» more

PDB
[Detailed view]		 33 PDB

1AFH; 1BE2; 1BV2; 1BWO; 1CZ2; 1FK0; 1FK1; 1FK2; 1FK3; 1FK4; 1FK5; 1FK6; 1FK7; 1GH1; 1JTB; 1LIP; 1MID; 1MZL; 1MZM; 1RZL; 1SIY; 1T12; 1UVA; 1UVB; 1UVC; 2ALG; 2B5S; 2MAL; 2N2Z; 2N81; 3GSH; 4XUW; 5LQV
» more

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