PROSITE entry PS00597
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General information about the entry
| Entry name [info] | PLANT_LTP |
| Accession [info] | PS00597 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1991 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00516 |
Name and characterization of the entry
| Description [info] | Plant lipid transfer proteins signature. |
| Pattern [info] |
[LIVM]-[PA]-x(2)-C-x(1,2)-[LIVM]-x(1,2)-[LIVMST]-x-[LIVMFY]-x(1,2)- [LIVMF]-[STRD]-x(3)-[DN]-C-x(2)-[LIVM]. |
Numerical results [info]
| Total number of hits | 92 in 92 different sequences |
| Number of true positive hits | 92 in 92 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 25 |
| Number of 'partial' sequences | 15 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 78.63 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Site [info] | disulfide at position 4 |
| Site [info] | disulfide at position 16 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
92 sequences
LTP1_MORNI (P85894), NLT11_PARJU (P43217), NLT12_PARJU (O04404), NLT13_PARJU (Q40905), NLT21_PARJU (P55958), NLT22_PARJU (O04403), NLT2A_ORYSJ (Q7XJ39), NLT2B_ORYSJ (Q2QYL2), NLT41_HORVU (Q43767), NLT42_HORVU (Q43875), NLT43_HORVU (Q42842), NLTP1_AMAHP (P83167), NLTP1_APIGR (E6Y8S8), NLTP1_ARATH (Q42589), NLTP1_BRANA (Q42614), NLTP1_CARCB (C0HM61), NLTP1_FOEVU (C0HLP9), NLTP1_GOSHI (Q42762), NLTP1_HORVU (P07597), NLTP1_LENCU (A0AT28), NLTP1_ORYSI (A2ZHF1), NLTP1_ORYSJ (Q0IQK9), NLTP1_PEA (A0A161AT60), NLTP1_PRUAR (P81651), NLTP1_PRUDO (P82534), NLTP1_PRUDU (Q43017), NLTP1_PRUPE (P81402), NLTP1_SOLLC (P27056), NLTP1_SOLPN (O24037), NLTP1_SORBI (Q43193), NLTP1_TOBAC (Q42952), NLTP1_TRAAM (C0HLG2), NLTP1_VIGRR (P83434), NLTP1_WHEAT (P24296), NLTP2_ARATH (Q9S7I3), NLTP2_BRANA (Q42615), NLTP2_GOSHI (Q43129), NLTP2_LENCU (A0AT29), NLTP2_ORYSI (A2ZAT0), NLTP2_PEA (A0A158V755), NLTP2_SOLCI (Q3YMR2), NLTP2_SOLLC (P93224), NLTP2_SOLPN (O24038), NLTP2_SORBI (Q43194), NLTP2_TOBAC (Q03461), NLTP3_ARATH (Q9LLR7), NLTP3_BRANA (Q42616), NLTP3_HORVU (Q43766), NLTP3_LENCU (A0AT30), NLTP3_ORYSI (A2ZAS9), NLTP3_ORYSJ (Q2QYL3), NLTP3_PEA (A0A158V976), NLTP3_PRUDU (Q43019), NLTP3_VITSX (P80273), NLTP3_WHEAT (Q84N29), NLTP4_ARATH (Q9LLR6), NLTP4_LENCU (A0AT33), NLTP4_ORYSJ (O65091), NLTP5_ARATH (Q9XFS7), NLTP5_LENCU (A0AT31), NLTP5_VITSX (P85105), NLTP6_ARATH (Q9LDB4), NLTP6_GOSHI (O24418), NLTP6_LENCU (A0AT32), NLTP8_HORVU (Q43871), NLTPA_ARATH (Q9LZV9), NLTPA_BRAOT (Q42641), NLTPA_RICCO (P10973), NLTPB_ARATH (Q2V3C1), NLTPB_BRAOT (Q42642), NLTPB_RICCO (P10974), NLTPC_ARATH (Q9SCZ0), NLTPC_RICCO (P10975), NLTPD_BRAOT (Q43304), NLTPD_RICCO (Q43119), NLTP_AMACA (P80450), NLTP_ANEGR (A0A0B4JDK1), NLTP_BETVU (Q43748), NLTP_CICAR (O23758), NLTP_CORAV (Q9ATH2), NLTP_DAUCA (P27631), NLTP_ELECO (P23802), NLTP_GERHY (Q39794), NLTP_LACSA (A0A2J6KL39), NLTP_LYCBA (B3A0N2), NLTP_MAIZE (P19656), NLTP_MALDO (Q9M5X7), NLTP_PINTA (Q41073), NLTP_PRUAV (Q9M5X8), NLTP_PYRCO (Q9M5X6), NLTP_SPIOL (P10976), SCA_LILLO (Q9SW93)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
25 sequences
ATA7_ARATH (F4JL89), BLT4_HORVU (P25307), C4_ORYSJ(Q6ZFW0), C6_ORYSJ(Q2R222), LTPG1_ARATH (Q9C7F7), LTPG2_ARATH (Q9LZH5), NLT2G_WHEAT (P82900), NLT2P_WHEAT (P82901), NLTL1_ORYSJ (Q6ASY2), NLTP1_ACTCC (P85204), NLTP1_ACTDE (P86137), NLTP1_HELAN (P82007), NLTP2_ACTDE (P85206), NLTP2_APIGA (P86809), NLTP2_HORVU (P20145), NLTP2_MAIZE (P83506), NLTP2_PRUAR (P82353), NLTP7_ARATH (Q9ZUK6), NLTP8_ARATH (Q9ZPW9), NLTP9_ARATH (Q6AWW0), NLTPD_ARATH (A8MQA2), NLTPE_ARATH (Q9FIT2), NLTPF_ARATH (Q9M0T1), NLTP_PEGHA (B3EWH4), NLTP_VIGUN (Q43681)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
15 sequences
AFP5_MALPA (P83139), NLTP1_NIGSA (P86527), NLTP1_VITSX (P80275), NLTP2_VITSX (P33556), NLTP2_WHEAT (P39085), NLTP3_SOLLC (P86417), NLTP4_VITSX (P80274), NLTPB_WHEAT (P26913), NLTP_ARTVU (P0C088), NLTP_CANSA (P86838), NLTP_CITLI (P84160), NLTP_CITSI (P84161), NLTP_MUSAC (P86333), NLTP_PINPI (P26912), NLTP_RAPSA (P29420)» more |
| PDB [Detailed view] |
33 PDB
1AFH; 1BE2; 1BV2; 1BWO; 1CZ2; 1FK0; 1FK1; 1FK2; 1FK3; 1FK4; 1FK5; 1FK6; 1FK7; 1GH1; 1JTB; 1LIP; 1MID; 1MZL; 1MZM; 1RZL; 1SIY; 1T12; 1UVA; 1UVB; 1UVC; 2ALG; 2B5S; 2MAL; 2N2Z; 2N81; 3GSH; 4XUW; 5LQV » more |