PROSITE entry PS00662
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General information about the entry
Entry name [info] | T2SP_E |
Accession [info] | PS00662 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1992 CREATED;
01-OCT-1993 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00567 |
Name and characterization of the entry
Description [info] | Bacterial type II secretion system protein E signature. |
Pattern [info] |
[LIVM]-R-x(2)-P-D-x-[LIVM](3)-G-E-[LIVM]-R-D. |
Numerical results [info]
Total number of hits | 30 in 30 different sequences |
Number of true positive hits | 30 in 30 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 3 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 90.91 % |
Comments [info]
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
30 sequences
COMGA_BACSU (P25953), COMGA_HALH5 (Q9K919), GSPE_AERHY (P31741), GSPE_DICCH (P31702), GSPE_DICD3 (Q01566), GSPE_ECOLI (P45759), GSPE_KLEPN (P15645), GSPE_PECCC (P31703), GSPE_PSEAE (Q00512), GSPE_VIBCH (P37093), GSPE_XANCP (P31742), HOFB_ECOLI (P36645), HOFB_HAEIN (P44622), HXCR_PSEAE (Q9I5N9), PILB_ACIAD (Q6FF45), PILB_MYXXD (Q1D098), PILB_PSEAE (P22608), PILB_THET8 (Q5SLC9), PILF_NEIGO (P37094), PILT_NEIGO (Q06581), PILT_PSEAE (P24559), TAPB_AERHY (P45792), TCPT_VIBCH (P29480), TFPB_ACIAD (Q6FA79), TRBB_RHIRD (P54907), TRBB_SINFN (P55395), VIRBB_AGRFC (P07169), VIRBB_AGRT9 (P0A3F9), VIRBB_RHIRD (P0A3F8), YGGR_ECOLI (P52052)» more
|
UniProtKB/Swiss-Prot False negative sequences |
3 sequences
CAS3_ECOLI (P38036), VIRBB_BARHE (Q9RNC7), VIRBB_BARQU (Q6FYW0) |
PDB [Detailed view] |
11 PDB
1P9R; 1P9W; 3JC8; 3JVU; 3JVV; 4KSR; 4KSS; 5IT5; 5OIU; 6EJF; 6F8L |