PROSITE entry PS00662

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	T2SP_E
Accession [info]	PS00662
Entry type [info]	PATTERN
Date [info]	01-JUN-1992 CREATED; 01-OCT-1993 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00567

Name and characterization of the entry

Description [info]	Bacterial type II secretion system protein E signature.
Pattern [info]	[LIVM]-R-x(2)-P-D-x-[LIVM](3)-G-E-[LIVM]-R-D.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.

Total number of hits	31 in 31 different sequences
Number of true positive hits	30 in 30 different sequences
Number of 'unknown' hits	1
Number of false positive hits	0
Number of false negative sequences	3
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	90.91 %

Comments [info]

Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	30 sequences COMGA_BACSU (P25953), COMGA_HALH5 (Q9K919), GSPE_AERHY (P31741), GSPE_DICCH (P31702), GSPE_DICD3 (Q01566), GSPE_ECOLI (P45759), GSPE_KLEPN (P15645), GSPE_PECCC (P31703), GSPE_PSEAE (Q00512), GSPE_VIBCH (P37093), GSPE_XANCP (P31742), HOFB_ECOLI (P36645), HOFB_HAEIN (P44622), HXCR_PSEAE (Q9I5N9), PILB_ACIAD (Q6FF45), PILB_MYXXD (Q1D098), PILB_PSEAE (P22608), PILB_THET8 (Q5SLC9), PILF_NEIGO (P37094), PILT_NEIGO (Q06581), PILT_PSEAE (P24559), TAPB_AERHY (P45792), TCPT_VIBCH (P29480), TFPB_ACIAD (Q6FA79), TRBB_RHIRD (P54907), TRBB_SINFN (P55395), VIRBB_AGRFC (P07169), VIRBB_AGRT9 (P0A3F9), VIRBB_RHIRD (P0A3F8), YGGR_ECOLI (P52052) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	3 sequences CAS3_ECOLI (P38036), VIRBB_BARHE (Q9RNC7), VIRBB_BARQU (Q6FYW0)
UniProtKB/Swiss-Prot 'Unknown' sequences	1 sequence COMGA_STRR6 (Q8DN86)
PDB [Detailed view]	11 PDB 1P9R; 1P9W; 3JC8; 3JVU; 3JVV; 4KSR; 4KSS; 5IT5; 5OIU; 6EJF; 6F8L