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PROSITE entry PS00662


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General information about the entry

Entry name [info] T2SP_E
Accession [info] PS00662
Entry type [info] PATTERN
Date [info] 01-JUN-1992 CREATED;
01-OCT-1993 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00567

Name and characterization of the entry

Description [info] Bacterial type II secretion system protein E signature.
Pattern [info] 
[LIVM]-R-x(2)-P-D-x-[LIVM](3)-G-E-[LIVM]-R-D.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 30 in 30 different sequences
Number of true positive hits 30 in 30 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 3
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 90.91 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 30 sequences 

COMGA_BACSU (P25953), COMGA_HALH5 (Q9K919), GSPE_AERHY  (P31741), 

GSPE_DICCH  (P31702), GSPE_DICD3  (Q01566), GSPE_ECOLI  (P45759), 
GSPE_KLEPN  (P15645), GSPE_PECCC  (P31703), GSPE_PSEAE  (Q00512), 
GSPE_VIBCH  (P37093), GSPE_XANCP  (P31742), HOFB_ECOLI  (P36645), 
HOFB_HAEIN  (P44622), HXCR_PSEAE  (Q9I5N9), PILB_ACIAD  (Q6FF45), 
PILB_MYXXD  (Q1D098), PILB_PSEAE  (P22608), PILB_THET8  (Q5SLC9), 
PILF_NEIGO  (P37094), PILT_NEIGO  (Q06581), PILT_PSEAE  (P24559), 
TAPB_AERHY  (P45792), TCPT_VIBCH  (P29480), TFPB_ACIAD  (Q6FA79), 
TRBB_RHIRD  (P54907), TRBB_SINFN  (P55395), VIRBB_AGRFC (P07169), 
VIRBB_AGRT9 (P0A3F9), VIRBB_RHIRD (P0A3F8), YGGR_ECOLI  (P52052)
» more

UniProtKB/Swiss-Prot
False negative sequences		 3 sequences 

CAS3_ECOLI  (P38036), VIRBB_BARHE (Q9RNC7), VIRBB_BARQU (Q6FYW0)


				
	

	

		PDB
[Detailed view]		
		
			11 PDB
			


			1P9R; 1P9W; 3JC8; 3JVU; 3JVV; 4KSR; 4KSS; 5IT5; 5OIU; 6EJF; 6F8L