PROSITE entry PS00662

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General information about the entry

Entry name [info]	T2SP_E
Accession [info]	PS00662
Entry type [info]	PATTERN
Date [info]	01-JUN-1992 CREATED; 01-OCT-1993 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00567

Name and characterization of the entry

Description [info]	Bacterial type II secretion system protein E signature.
Pattern [info]	[LIVM]-R-x(2)-P-D-x-[LIVM](3)-G-E-[LIVM]-R-D.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	31 in 31 different sequences
Number of true positive hits	30 in 30 different sequences
Number of 'unknown' hits	1
Number of false positive hits	0
Number of false negative sequences	3
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	90.91 %

Comments [info]

Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	30 sequences COMGA_BACSU (P25953), COMGA_HALH5 (Q9K919), GSPE_AERHY (P31741), GSPE_DICCH (P31702), GSPE_DICD3 (Q01566), GSPE_ECOLI (P45759), GSPE_KLEPN (P15645), GSPE_PECCC (P31703), GSPE_PSEAE (Q00512), GSPE_VIBCH (P37093), GSPE_XANCP (P31742), HOFB_ECOLI (P36645), HOFB_HAEIN (P44622), HXCR_PSEAE (Q9I5N9), PILB_ACIAD (Q6FF45), PILB_MYXXD (Q1D098), PILB_PSEAE (P22608), PILB_THET8 (Q5SLC9), PILF_NEIGO (P37094), PILT_NEIGO (Q06581), PILT_PSEAE (P24559), TAPB_AERHY (P45792), TCPT_VIBCH (P29480), TFPB_ACIAD (Q6FA79), TRBB_RHIRD (P54907), TRBB_SINFN (P55395), VIRBB_AGRFC (P07169), VIRBB_AGRT9 (P0A3F9), VIRBB_RHIRD (P0A3F8), YGGR_ECOLI (P52052) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	3 sequences CAS3_ECOLI (P38036), VIRBB_BARHE (Q9RNC7), VIRBB_BARQU (Q6FYW0)
UniProtKB/Swiss-Prot 'Unknown' sequences	1 sequence COMGA_STRR6 (Q8DN86)
PDB [Detailed view]	11 PDB 1P9R; 1P9W; 3JC8; 3JVU; 3JVV; 4KSR; 4KSS; 5IT5; 5OIU; 6EJF; 6F8L