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Entry: PS00662

General information about the entry

Entry name [info] T2SP_E
Accession [info] PS00662
Entry type [info] PATTERN
Date [info] 01-JUN-1992 CREATED;
01-OCT-1993 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00567

Name and characterization of the entry

Description [info] Bacterial type II secretion system protein E signature.
Pattern [info]
[LIVM]-R-x(2)-P-D-x-[LIVM](3)-G-E-[LIVM]-R-D.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 28 in 28 different sequences
Number of true positive hits 28 in 28 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 3
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 90.32 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
28 sequences

COMGA_BACHD (Q9K919    ), COMGA_BACSU (P25953    ), GSPE_AERHY  (P31741    ), 
GSPE_DICCH  (P31702    ), GSPE_DICD3  (Q01566    ), GSPE_ECOLI  (P45759    ), 
GSPE_KLEPN  (P15645    ), GSPE_PECCC  (P31703    ), GSPE_PSEAE  (Q00512    ), 
GSPE_VIBCH  (P37093    ), GSPE_XANCP  (P31742    ), HOFB_ECOLI  (P36645    ), 
HOFB_HAEIN  (P44622    ), HXCR_PSEAE  (Q9I5N9    ), PILB_MYXXD  (Q1D098    ), 
PILB_PSEAE  (P22608    ), PILB_THET8  (Q5SLC9    ), PILF_NEIGO  (P37094    ), 
PILT_NEIGO  (Q06581    ), PILT_PSEAE  (P24559    ), TAPB_AERHY  (P45792    ), 
TCPT_VIBCH  (P29480    ), TRBB_RHIRD  (P54907    ), TRBB_SINFN  (P55395    ), 
VIRBB_AGRFC (P07169    ), VIRBB_AGRT9 (P0A3F9    ), VIRBB_RHIRD (P0A3F8    ), 
YGGR_ECOLI  (P52052    )
» more

UniProtKB/Swiss-Prot
False negative sequences
3 sequences

CAS3_ECOLI  (P38036    ), VIRBB_BARHE (Q9RNC7    ), VIRBB_BARQU (Q6FYW0    )

		
PDB
[Detailed view]
11 PDB

1P9R; 1P9W; 3JC8; 3JVU; 3JVV; 4KSR; 4KSS; 5IT5; 5OIU; 6EJF; 6F8L

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