PROSITE entry PS00662
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General information about the entry
Entry name [info] | T2SP_E |
Accession [info] | PS00662 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1992 CREATED;
01-OCT-1993 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00567 |
Name and characterization of the entry
Description [info] | Bacterial type II secretion system protein E signature. |
Pattern [info] |
[LIVM]-R-x(2)-P-D-x-[LIVM](3)-G-E-[LIVM]-R-D. |
Numerical results [info]
Total number of hits | 30 in 30 different sequences |
Number of true positive hits | 30 in 30 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 3 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 90.91 % |
Comments [info]
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
30 sequences
COMGA_BACSU (P25953 ), COMGA_HALH5 (Q9K919 ), GSPE_AERHY (P31741 ), GSPE_DICCH (P31702 ), GSPE_DICD3 (Q01566 ), GSPE_ECOLI (P45759 ), GSPE_KLEPN (P15645 ), GSPE_PECCC (P31703 ), GSPE_PSEAE (Q00512 ), GSPE_VIBCH (P37093 ), GSPE_XANCP (P31742 ), HOFB_ECOLI (P36645 ), HOFB_HAEIN (P44622 ), HXCR_PSEAE (Q9I5N9 ), PILB_ACIAD (Q6FF45 ), PILB_MYXXD (Q1D098 ), PILB_PSEAE (P22608 ), PILB_THET8 (Q5SLC9 ), PILF_NEIGO (P37094 ), PILT_NEIGO (Q06581 ), PILT_PSEAE (P24559 ), TAPB_AERHY (P45792 ), TCPT_VIBCH (P29480 ), TFPB_ACIAD (Q6FA79 ), TRBB_RHIRD (P54907 ), TRBB_SINFN (P55395 ), VIRBB_AGRFC (P07169 ), VIRBB_AGRT9 (P0A3F9 ), VIRBB_RHIRD (P0A3F8 ), YGGR_ECOLI (P52052 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
3 sequences
CAS3_ECOLI (P38036 ), VIRBB_BARHE (Q9RNC7 ), VIRBB_BARQU (Q6FYW0 ) |
PDB [Detailed view] |
11 PDB
1P9R; 1P9W; 3JC8; 3JVU; 3JVV; 4KSR; 4KSS; 5IT5; 5OIU; 6EJF; 6F8L |