PROSITE entry PS00677

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
PURL: https://purl.expasy.org/prosite/signature/PS00677

Direct ScanProsite submission

General information about the entry

Entry name [info]	DAO
Accession [info]	PS00677
Entry type [info]	PATTERN
Date [info]	01-JUN-1992 CREATED; 01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00573

Name and characterization of the entry

Description [info]	D-amino acid oxidases signature.
Pattern [info]	[LIVM](2)-H-[NHA]-Y-G-x-[GSA](2)-x-G-x(5)-G-x-A.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.

Total number of hits	28 in 28 different sequences
Number of true positive hits	28 in 28 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	9
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	75.68 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Site [info]	active_site(?) at position 2
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

28 sequences

DAO_STRCO   (Q9X7P6), OXDA2_CRYD2 (A0A095C6S0), OXDA_CAEEL  (Q95XG9),

OXDA_CAVPO  (Q9Z1M5), OXDA_CRIGR  (Q9Z302), OXDA_DICDI  (Q556W1), 
OXDA_DUGRY  (T2HG31), OXDA_FUSVN  (P24552), OXDA_HUMAN  (P14920), 
OXDA_KOMPG  (C4R4G9), OXDA_MACFA  (A2V9Y8), OXDA_MOUSE  (P18894), 
OXDA_PIG(P00371), OXDA_RABIT  (P22942), OXDA_RAT(O35078), 
OXDA_RHOTO  (P80324), OXDA_TALEM  (A0A499UB99), OXDA_TRIVR  (Q99042), 
OXDD1_CAEEL (O45307), OXDD2_CAEBR (A8WXM1), OXDD2_CAEEL (Q19564), 
OXDD3_CAEEL (O01739), OXDD_BOVIN  (P31228), OXDD_HUMAN  (Q99489), 
OXDD_MOUSE  (Q922Z0), OXDD_OCTVU  (A0A7E6FSU6), OXDD_PIG(A3KCL7), 
OXDD_RAT(D3ZDM7)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

9 sequences

DAO_BRADU   (Q89F89), DAO_GLUPR   (Q7X2D3), DAO_MYCTO   (P9WP26),

DAO_MYCTU   (P9WP27), DAO_RUBXD   (Q1AYM8), DAO_UNKP(A0A0E3JXD9), 
OXDA_CANBO  (Q9HGY3), OXDD_KOMPG  (C4R6B0), OXDD_VANHU  (Q75WF1)

» more

PDB
[Detailed view]

41 PDB

pdb_00001an9; pdb_00001c0i; pdb_00001c0k; pdb_00001c0l; pdb_00001c0p; pdb_00001dao; pdb_00001ddo; pdb_00001evi; pdb_00001kif; pdb_00001ve9; pdb_00002du8; pdb_00002e48; pdb_00002e49; pdb_00002e4a; pdb_00002e82; pdb_00003cuk; pdb_00003g3e; pdb_00003w4i; pdb_00003w4j; pdb_00003w4k; pdb_00003wgt; pdb_00003znn; pdb_00003zno; pdb_00003znp; pdb_00003znq; pdb_00004qfc; pdb_00004qfd; pdb_00004yjd; pdb_00004yjf; pdb_00004yjg; pdb_00004yjh; pdb_00005wwv; pdb_00005wx2; pdb_00005zj9; pdb_00005zja; pdb_00006kbp; pdb_00006rkf; pdb_00007ct4; pdb_00007u9s; pdb_00007u9u; pdb_00008hy5
» more