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PROSITE entry PS00691


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General information about the entry

Entry name [info] DNA_PHOTOLYASES_1_2
Accession [info] PS00691
Entry type [info] PATTERN
Date [info] 01-JUN-1992 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00331

Name and characterization of the entry

Description [info] DNA photolyases class 1 signature 2.
Pattern [info] 
[DN]-R-x-R-[LIVM]-[LIVMN]-x-[STA]-[STAQ]-F-[LIVMFA]-x-K-x-L-x(2,3)-W-
[KRQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 17 in 17 different sequences
Number of true positive hits 17 in 17 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 3
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 85.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 17 sequences 

CRY1_ARATH  (Q43125), CRY1_SINAL  (P40115), CRY2_ARATH  (Q96524), 

PHRA_AGRFC  (A9CJC9), PHR_ALKPO   (Q04449), PHR_BUCAI   (P57386), 
PHR_BUCBP   (Q89AJ9), PHR_ECOLI   (P00914), PHR_HALSA   (Q9HQ46), 
PHR_NEUCR   (P27526), PHR_SALTY   (P25078), PHR_STRGR   (P12768), 
PHR_SYNY3   (Q55081), PHR_THET2   (P61496), PHR_THET8   (P61497), 
PHR_VIBCH   (Q9KNA8), PHR_YEAST   (P05066)
» more

UniProtKB/Swiss-Prot
False negative sequences		 3 sequences 

PHR_SYNP6   (P05327), UVR3_ARATH  (O48652), UVR3_ORYSJ  (Q0E2Y1)


				
	

	

		PDB
[Detailed view]		
		
			17 PDB
			


			1DNP; 1IQR; 1IQU; 1OWL; 1OWM; 1OWN; 1OWO; 1OWP; 1QNF; 1TEZ; 1U3C; 1U3D; 
			
				2J07; 2J08; 2J09; 4U63; 6X24
			
			

			» more