PROSITE entry PS00709
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General information about the entry
Entry name [info] | RIBOSOMAL_L30E_1 |
Accession [info] | PS00709 |
Entry type [info] | PATTERN |
Date [info] |
01-DEC-1992 CREATED;
01-APR-2006 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00588 |
Name and characterization of the entry
Description [info] | Ribosomal protein L30e signature 1. |
Pattern [info] |
[STA]-x(5)-G-x-[QKRN]-x(2)-[LIVMQ]-[KRQT]-x(2)-[KR]-x-[GS]-x(2)-[KQ]-x- [LIVM](3). |
Numerical results [info]
Total number of hits | 48 in 48 different sequences |
Number of true positive hits | 47 in 47 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 1 |
Number of false negative sequences | 17 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 97.92 % |
Recall (true positives / (true positives + false negatives)) | 73.44 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes |
Maximum number of repetitions [info] | 1 |
Version [info] | 2 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
47 sequences
RL301_ARATH (Q9C8F7 ), RL302_ARATH (Q8VZ19 ), RL303_ARATH (Q9LSA3 ), RL30A_SCHPO (P52808 ), RL30B_SCHPO (Q9UTP0 ), RL30E_AERPE (Q9YAU3 ), RL30E_ARCFU (O28389 ), RL30E_METJA (P54061 ), RL30E_METKA (Q8TXJ0 ), RL30E_METM5 (A4FWF4 ), RL30E_METM6 (A9A9U8 ), RL30E_METM7 (A6VGV1 ), RL30E_METMP (Q6LXI6 ), RL30E_METTH (O27127 ), RL30E_METVS (P14025 ), RL30E_PYRAB (Q9V112 ), RL30E_PYRFU (Q8U0M6 ), RL30E_PYRHO (O74018 ), RL30E_SACS2 (Q980R3 ), RL30E_SULAC (P11522 ), RL30E_SULTO (P58376 ), RL30E_THECE (P29160 ), RL30E_THESM (C6A1G2 ), RL30_ASHGO (Q752U5 ), RL30_BOVIN (Q3T0D5 ), RL30_BRABE (P58374 ), RL30_CANAL (A0A1D8PM75), RL30_CANGA (Q6FXZ0 ), RL30_CHICK (P67883 ), RL30_DICDI (Q55BS9 ), RL30_HUMAN (P62888 ), RL30_ICTPU (P58372 ), RL30_KLULA (P38664 ), RL30_LEIMA (P39095 ), RL30_LUPLU (O49884 ), RL30_MACFA (Q76KA2 ), RL30_MAIZE (O48558 ), RL30_MOUSE (P62889 ), RL30_NEUCR (Q7S7F1 ), RL30_OPHHA (P67884 ), RL30_ORYSJ (Q9SDG6 ), RL30_RAT (P62890 ), RL30_SPOFR (P58375 ), RL30_TRYBB (P49153 ), RL30_WHEAT (Q5I7K9 ), RL30_YARLI (Q6C4U7 ), RL30_YEAST (P14120 )» more
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UniProtKB/Swiss-Prot False negative sequences |
17 sequences
RL30E_CALMQ (A8MB78 ), RL30E_METAC (Q8TRB9 ), RL30E_METB6 (A7I9N4 ), RL30E_METHJ (Q2FPJ8 ), RL30E_METMA (Q8PUR3 ), RL30E_METPE (B8GDW0 ), RL30E_METS3 (A5ULN4 ), RL30E_METST (Q2NEK6 ), RL30E_METTP (A0B560 ), RL30E_PYRAE (Q8ZYQ6 ), RL30E_PYRCJ (A3MXZ2 ), RL30E_PYRIL (A1RSE6 ), RL30E_PYRNV (B1YC27 ), RL30E_THEGJ (C5A206 ), RL30E_THEKO (Q5JE35 ), RL30_EUPES (Q9M5M6 ), RL30_TETTS (P0DJ59 )» more |
UniProtKB/Swiss-Prot False positive sequences |
1 sequence
RXL7_BACSU (P46350 ) |
PDB [Detailed view] |
204 PDB
1CK2; 1CN7; 1GO0; 1GO1; 1H7M; 1NMU; 1T0K; 1W3E; 1W40; 1W41; 1W42; 1YSH; 2BO1; 3CPQ; 3J6X; 3J6Y; 3J77; 3J78; 3JCT; 3LFO; 3N4Y; 3N4Z; 3RA5; 3RA6; 3VI6; 4U3M; 4U3N; 4U3U; 4U4N; 4U4O; 4U4Q; 4U4R; 4U4U; 4U4Y; 4U4Z; 4U50; 4U51; 4U52; 4U53; 4U55; 4U56; 4U6F; 4UG0; 4V3P; 4V4N; 4V6I; 4V6U; 4V6X; 4V7E; 4V7F; 4V7R; 4V88; 4V8T; 4V8Y; 4V8Z; 4V91; 5AJ0; 5APN; 5APO; 5DAT; 5DC3; 5DGE; 5DGF; 5DGV; 5FCI; 5FCJ; 5GAK; 5H4P; 5I4L; 5IT7; 5JCS; 5JUO; 5JUP; 5JUS; 5JUT; 5JUU; 5LKS; 5LYB; 5M1J; 5MC6; 5MEI; 5NDG; 5NDV; 5NDW; 5OBM; 5ON6; 5T2C; 5T62; 5T6R; 5TBW; 5TGA; 5TGM; 6CB1; 6ELZ; 6EM5; 6FT6; 6GQ1; 6GQB; 6GQV; 6HD7; 6HHQ; 6I7O; 6IP5; 6IP6; 6IP8; 6LQM; 6LSR; 6LSS; 6LU8; 6M62; 6N8J; 6N8K; 6N8L; 6N8M; 6N8N; 6N8O; 6OIG; 6OLE; 6OLF; 6OLG; 6OLI; 6OLZ; 6OM0; 6OM7; 6Q8Y; 6QIK; 6QT0; 6QTZ; 6QZP; 6R84; 6R86; 6R87; 6RI5; 6RZZ; 6S05; 6S47; 6SNT; 6SV4; 6SWA; 6T4Q; 6T7I; 6T7T; 6T83; 6TB3; 6TNU; 6UZ7; 6W6L; 6WOO; 6XA1; 6XIQ; 6XIR; 6Y0G; 6Y2L; 6Y57; 6Y6X; 6YLG; 6YLH; 6YLX; 6YLY; 6Z6J; 6Z6K; 6Z6L; 6Z6M; 6Z6N; 6ZM7; 6ZME; 6ZMI; 6ZMO; 7B7D; 7BHP; 7BT6; 7BTB; 7CPU; 7CPV; 7F5S; 7LS1; 7LS2; 7MPI; 7MPJ; 7N8B; 7NAC; 7NAD; 7NRC; 7NRD; 7OF1; 7OH3; 7OHQ; 7OHR; 7OW7; 7PZY; 7Q08; 7Q0F; 7Q0P; 7Q0R; 7QGG; 7QVP; 7R72; 7R7A; 7R81; 7RR5; 7TOO; 7TOP; 7Z34; 7ZW0 » more |