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PROSITE entry PS00709


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General information about the entry

Entry name [info] RIBOSOMAL_L30E_1
Accession [info] PS00709
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED;
01-APR-2006 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00588

Name and characterization of the entry

Description [info] Ribosomal protein L30e signature 1.
Pattern [info] 
[STA]-x(5)-G-x-[QKRN]-x(2)-[LIVMQ]-[KRQT]-x(2)-[KR]-x-[GS]-x(2)-[KQ]-x-
[LIVM](3).

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 48 in 48 different sequences
Number of true positive hits 47 in 47 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 17
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 97.92 %
Recall (true positives / (true positives + false negatives)) 73.44 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 47 sequences 

RL301_ARATH (Q9C8F7), RL302_ARATH (Q8VZ19), RL303_ARATH (Q9LSA3), 

RL30A_SCHPO (P52808), RL30B_SCHPO (Q9UTP0), RL30E_AERPE (Q9YAU3), 
RL30E_ARCFU (O28389), RL30E_METJA (P54061), RL30E_METKA (Q8TXJ0), 
RL30E_METM5 (A4FWF4), RL30E_METM6 (A9A9U8), RL30E_METM7 (A6VGV1), 
RL30E_METMP (Q6LXI6), RL30E_METTH (O27127), RL30E_METVS (P14025), 
RL30E_PYRAB (Q9V112), RL30E_PYRFU (Q8U0M6), RL30E_PYRHO (O74018), 
RL30E_SACS2 (Q980R3), RL30E_SULAC (P11522), RL30E_SULTO (P58376), 
RL30E_THECE (P29160), RL30E_THESM (C6A1G2), RL30_BOVIN  (Q3T0D5), 
RL30_BRABE  (P58374), RL30_CANAL  (A0A1D8PM75), RL30_CANGA  (Q6FXZ0), 
RL30_CHICK  (P67883), RL30_DICDI  (Q55BS9), RL30_EREGS  (Q752U5), 
RL30_HUMAN  (P62888), RL30_ICTPU  (P58372), RL30_KLULA  (P38664), 
RL30_LEIMA  (P39095), RL30_LUPLU  (O49884), RL30_MACFA  (Q76KA2), 
RL30_MAIZE  (O48558), RL30_MOUSE  (P62889), RL30_NEUCR  (Q7S7F1), 
RL30_OPHHA  (P67884), RL30_ORYSJ  (Q9SDG6), RL30_RAT(P62890), 
RL30_SPOFR  (P58375), RL30_TRYBB  (P49153), RL30_WHEAT  (Q5I7K9), 
RL30_YARLI  (Q6C4U7), RL30_YEAST  (P14120)
» more

UniProtKB/Swiss-Prot
False negative sequences		 17 sequences 

RL30E_CALMQ (A8MB78), RL30E_METAC (Q8TRB9), RL30E_METB6 (A7I9N4), 

RL30E_METHJ (Q2FPJ8), RL30E_METMA (Q8PUR3), RL30E_METPE (B8GDW0), 
RL30E_METS3 (A5ULN4), RL30E_METST (Q2NEK6), RL30E_METTP (A0B560), 
RL30E_PYRAE (Q8ZYQ6), RL30E_PYRCJ (A3MXZ2), RL30E_PYRIL (A1RSE6), 
RL30E_PYRNV (B1YC27), RL30E_THEGJ (C5A206), RL30E_THEKO (Q5JE35), 
RL30_EUPES  (Q9M5M6), RL30_TETTS  (P0DJ59)
» more

UniProtKB/Swiss-Prot
False positive sequences		 1 sequence 

RXL7_BACSU  (P46350)


				
	

	

		PDB
[Detailed view]		
		
			256 PDB
			


			1CK2; 1CN7; 1GO0; 1GO1; 1H7M; 1NMU; 1T0K; 1W3E; 1W40; 1W41; 1W42; 1YSH; 
			
				2BO1; 3CPQ; 3J6X; 3J6Y; 3J77; 3J78; 3JCT; 3LFO; 3N4Y; 3N4Z; 3RA5; 3RA6; 
				3VI6; 4U3M; 4U3N; 4U3U; 4U4N; 4U4O; 4U4Q; 4U4R; 4U4U; 4U4Y; 4U4Z; 4U50; 
				4U51; 4U52; 4U53; 4U55; 4U56; 4U6F; 4UG0; 4V3P; 4V4N; 4V6I; 4V6U; 4V6X; 
				4V7E; 4V7F; 4V7R; 4V88; 4V8T; 4V8Y; 4V8Z; 4V91; 5AJ0; 5APN; 5APO; 5DAT; 
				5DC3; 5DGE; 5DGF; 5DGV; 5FCI; 5FCJ; 5GAK; 5H4P; 5I4L; 5IT7; 5JCS; 5JUO; 
				5JUP; 5JUS; 5JUT; 5JUU; 5LKS; 5LYB; 5M1J; 5MC6; 5MEI; 5NDG; 5NDV; 5NDW; 
				5OBM; 5ON6; 5T2C; 5T62; 5T6R; 5TBW; 5TGA; 5TGM; 6CB1; 6ELZ; 6EM5; 6FT6; 
				6GQ1; 6GQB; 6GQV; 6HD7; 6HHQ; 6I7O; 6IP5; 6IP6; 6IP8; 6LQM; 6LSR; 6LSS; 
				6LU8; 6M62; 6N8J; 6N8K; 6N8L; 6N8M; 6N8N; 6N8O; 6OIG; 6OLE; 6OLF; 6OLG; 
				6OLI; 6OLZ; 6OM0; 6OM7; 6Q8Y; 6QIK; 6QT0; 6QTZ; 6QZP; 6R84; 6R86; 6R87; 
				6RI5; 6RZZ; 6S05; 6S47; 6SNT; 6SV4; 6SWA; 6T4Q; 6T7I; 6T7T; 6T83; 6TB3; 
				6TNU; 6UZ7; 6W6L; 6WOO; 6XA1; 6XIQ; 6XIR; 6Y0G; 6Y2L; 6Y57; 6Y6X; 6YLG; 
				6YLH; 6YLX; 6YLY; 6Z6J; 6Z6K; 6Z6L; 6Z6M; 6Z6N; 6ZM7; 6ZME; 6ZMI; 6ZMO; 
				7B7D; 7BHP; 7BT6; 7BTB; 7CPU; 7CPV; 7F5S; 7LS1; 7LS2; 7MPI; 7MPJ; 7N8B; 
				7NAC; 7NAD; 7NRC; 7NRD; 7OF1; 7OH3; 7OHQ; 7OHR; 7OW7; 7PZY; 7Q08; 7Q0F; 
				7Q0P; 7Q0R; 7QGG; 7QVP; 7R72; 7R7A; 7R81; 7RR5; 7TOO; 7TOP; 7U0H; 7UG6; 
				7UOO; 7UQB; 7UQZ; 7V08; 7XNX; 7XNY; 7Z34; 7ZPQ; 7ZRS; 7ZS5; 7ZUW; 7ZUX; 
				7ZW0; 8A3D; 8AAF; 8AGT; 8AGU; 8AGV; 8AGW; 8AGX; 8AGZ; 8BIP; 8BJQ; 8BQD; 
				8BQX; 8ESQ; 8ESR; 8ETC; 8ETG; 8EUG; 8EUI; 8FKY; 8FKZ; 8FL2; 8FL3; 8FL4; 
				8FL6; 8FL7; 8FL9; 8FLA; 8FLB; 8FLC; 8FLD; 8FLE; 8FLF; 8G5Y; 8G5Z; 8G60; 
				8G61; 8G6J; 8GLP; 8HFR
			
			

			» more