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PROSITE documentation PDOC00588

Ribosomal protein L30e signatures





Description

A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of:

  • Mammalian L30 [1].
  • Leishmania major L30.
  • Yeast YL32 [2].
  • Bacillus subtilis hypothetical protein ybxF.
  • Thermococcus celer L30 [3].
  • A probable ribosomal protein (ORF 1) from Methanococcus vannielii [4].
  • A probable ribosomal protein (ORF 104) from Sulfolobus acidocaldarius [5].

These proteins have 82 to 114 amino-acid residues. As signature patterns, we selected two conserved regions; one located in the N-terminal region, the other in the C-terminal.

Last update:

April 2006 / Pattern revised.

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Technical section

PROSITE methods (with tools and information) covered by this documentation:

RIBOSOMAL_L30E_1, PS00709; Ribosomal protein L30e signature 1  (PATTERN)

RIBOSOMAL_L30E_2, PS00993; Ribosomal protein L30e signature 2  (PATTERN)


References

1AuthorsNakanishi O. Oyanagi M. Kuwano Y. Tanaka T. Nakayama T. Mitsui H. Nabeshima Y. Ogata K.
TitleMolecular cloning and nucleotide sequences of cDNAs specific for rat liver ribosomal proteins S17 and L30.
SourceGene 35:289-296(1985).
PubMed ID3840111

2AuthorsDabeva M.D. Warner J.R.
TitleThe yeast ribosomal protein L32 and its gene.
SourceJ. Biol. Chem. 262:16055-16059(1987).
PubMed ID3316213

3AuthorsKlenk H.-P. Schwass V. Zillig W.
TitleNucleotide sequence of the genes encoding the L30, S12 and S7 equivalent ribosomal proteins from the archaeum Thermococcus celer.
SourceNucleic Acids Res. 19:6047-6047(1991).
PubMed ID1840672

4AuthorsLechner K. Heller G. Boeck A.
TitleOrganization and nucleotide sequence of a transcriptional unit of Methanococcus vannielii comprising genes for protein synthesis elongation factors and ribosomal proteins.
SourceJ. Mol. Evol. 29:20-27(1989).
PubMed ID2475640

5AuthorsPuehler G. Lottspeich F. Zillig W.
SourceNucleic Acids Res. 17:4517-4534(1989).



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