PROSITE logo

PROSITE entry PS00756


View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] SECY_2
Accession [info] PS00756
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED;
01-DEC-2001 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00612

Name and characterization of the entry

Description [info] Protein secY signature 2.
Pattern [info] 
[LIVMFYW](2)-x-[DE]-x-[LIVM]-[STDNQ]-x(2,3)-[GK]-[LIVMF]-[GST]-[NST]-G-
x-[GST]-[LIV]-[LIVFP].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 120 in 120 different sequences
Number of true positive hits 120 in 120 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 9
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 93.02 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 120 sequences 

S61A1_BOVIN (Q5EA68), S61A1_CANLF (P38377), S61A1_DANRE (Q90ZM2), 

S61A1_HUMAN (P61619), S61A1_MOUSE (P61620), S61A1_ONCMY (Q98SN9), 
S61A1_PONAB (Q5R5L5), S61A1_RAT   (P61621), S61A2_BOVIN (Q2KHX4), 
S61A2_DANRE (Q90YL4), S61A2_HUMAN (Q9H9S3), S61A2_MOUSE (Q9JLR1), 
S61A2_ONCMY (Q98SN8), S61A2_PONAB (Q5NVM7), SC61A_BORSA (Q8AY33), 
SC61A_BOVVA (Q8AY31), SC61A_CANAL (Q9P8E3), SC61A_CANGA (Q6FRY3), 
SC61A_DEBHA (Q6BN08), SC61A_DICDI (Q54XK2), SC61A_DISMA (Q7T277), 
SC61A_GADOC (Q8AY32), SC61A_HALRO (Q25147), SC61A_HARAN (Q7T278), 
SC61A_HEMAM (Q8AY34), SC61A_KLULA (Q6CPY9), SC61A_NEUCR (Q870W0), 
SC61A_NOTAN (Q8AY35), SC61A_PAGBO (Q8AY36), SC61A_SCHPO (P79088), 
SC61A_WICAO (Q96TW8), SC61A_YARLI (P78979), SC61A_YEAST (P32915), 
SCY1_ARATH  (Q38885), SECY1_LACKZ (F6CD01), SECY2_LACKZ (F6CFW7), 
SECY_ANTSP  (Q37143), SECY_AQUAE  (O66491), SECY_ARCFU  (O28377), 
SECY_BACLD  (Q05207), SECY_BACSU  (P16336), SECY_BORBU  (O51451), 
SECY_BUCAI  (P57571), SECY_BUCAK  (P49976), SECY_BUCAP  (Q8K969), 
SECY_BUCBP  (Q89A85), SECY_CHLMU  (Q9PJN1), SECY_CHLPN  (Q9Z7S5), 
SECY_CHLTR  (P28539), SECY_CORGL  (P38376), SECY_CYACA  (P46249), 
SECY_CYAM1  (Q85FU6), SECY_CYAPA  (P25014), SECY_DIALT  (P28540), 
SECY_ECO57  (P0AGA4), SECY_ECOL6  (P0AGA3), SECY_ECOLI  (P0AGA2), 
SECY_GUITH  (P28527), SECY_HAEIN  (P43804), SECY_HALH5  (P38375), 
SECY_HALMA  (P28542), SECY_HALSA  (Q9HPB1), SECY_HALVD  (Q977V3), 
SECY_HELPJ  (Q9ZJS9), SECY_HELPY  (O25879), SECY_LACLA  (P58118), 
SECY_LACLC  (P27148), SECY_MAIZE  (O63066), SECY_METJA  (Q60175), 
SECY_METTH  (O26134), SECY_METVA  (P28541), SECY_MICLU  (P33108), 
SECY_MYCBO  (P0A5Z3), SECY_MYCCT  (P10250), SECY_MYCGA  (O52351), 
SECY_MYCGE  (P47416), SECY_MYCLE  (O33006), SECY_MYCPN  (Q59548), 
SECY_MYCTO  (P9WGN2), SECY_MYCTU  (P9WGN3), SECY_NEOYE  (Q1XDJ1), 
SECY_ORYSJ  (Q6ZG25), SECY_PEA(Q9XQU4), SECY_PORPU  (P51297), 
SECY_PYRAB  (Q9V1V8), SECY_PYRFU  (Q8U019), SECY_PYRHO  (O59442), 
SECY_PYRSA  (P38397), SECY_RICBR  (Q1RHP1), SECY_RICCN  (Q92GY6), 
SECY_RICFE  (Q4UMQ9), SECY_RICPR  (Q9ZCS5), SECY_RICTY  (Q68W98), 
SECY_SACS2  (Q9UX84), SECY_SHIFL  (P0AGA5), SECY_SPIOL  (P93690), 
SECY_STAA8  (O08387), SECY_STAAC  (Q5HDX8), SECY_STAAM  (Q99S39), 
SECY_STAAN  (Q7A468), SECY_STAAR  (Q6GEK3), SECY_STAAS  (Q6G791), 
SECY_STAAW  (Q7A086), SECY_STACT  (Q05217), SECY_STAEQ  (Q5HM19), 
SECY_STAES  (Q8CNF3), SECY_STRCO  (P46785), SECY_STRGB  (Q59912), 
SECY_STRGR  (Q59916), SECY_STRLI  (P49977), SECY_STRSC  (P43416), 
SECY_SULAC  (P49978), SECY_SYNE7  (P0A4H0), SECY_SYNP6  (P0A4H1), 
SECY_SYNY3  (P77964), SECY_THEMA  (Q9X1I9), SECY_THET8  (Q5SHQ8), 
SECY_TRICV  (P49461), SECY_VAULI  (B7T1W7), SECY_VIBCH  (P78283)
» more

UniProtKB/Swiss-Prot
False negative sequences		 9 sequences 

SC61A_EREGS (Q752H7), SC61A_PYRSA (P38379), SECY_AERPE  (Q9YDD0), 

SECY_EMIHU  (Q4G351), SECY_HETA2  (B2XTD8), SECY_PSEAE  (Q9HWF5), 
SECY_STRGC  (A8AZK5), SECY_STRSV  (A3CK84), SSH1_YEAST  (P38353)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 2 sequences 

SECY_GEOSE  (P28620), SECY_PARDE  (P72179)


				
	

	

		PDB
[Detailed view]		
		
			65 PDB
			


			1RH5; 1RHZ; 2AKH; 2AKI; 2WWB; 2YXQ; 2YXR; 2ZJS; 2ZQP; 3BO0; 3BO1; 3DIN; 
			
				3DKN; 3DL8; 3J45; 3J46; 3JC2; 3MP7; 4CG5; 4CG6; 4CG7; 4V4N; 4V6M; 4V7I; 
				5A6U; 5ABB; 5AWW; 5CH4; 5GAE; 5MG3; 5NCO; 6FTG; 6FTI; 6FTJ; 6N3Q; 6ND1; 
				6R7L; 6R7Q; 6W6L; 6Z3T; 7AFT; 7KAH; 7KAI; 7KAJ; 7KAO; 7KAP; 7KAQ; 7KAR; 
				7KAS; 7KAT; 7KAU; 7KB5; 7TM3; 7TUT; 8B6L; 8BTK; 8DNV; 8DNW; 8DNX; 8DNY; 
				8DNZ; 8DO0; 8DO1; 8DO2; 8DO3
			
			

			» more