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Entry: PS00762

General information about the entry

Entry name [info] WHEP_TRS_1
Accession [info] PS00762
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED;
01-APR-2006 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00614

Name and characterization of the entry

Description [info] WHEP-TRS domain signature.
Pattern [info] 
[QYR]-[GH]-[DNEAR]-x-[LIV]-[KR]-x(2)-K-x(2)-[KRNG]-[AS]-x(4)-[LIV]-
[DENKA]-x(2)-[IV]-x(2)-L-x(3)-K.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 36 in 27 different sequences
Number of true positive hits 36 in 27 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 2
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 94.74 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 6
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 27 sequences 

GARS_CAEEL  (Q10039    ), GARS_HUMAN  (P41250    ), GARS_MOUSE  (Q9CZD3    ), 

GARS_PONAB  (Q5RBL1    ), HARS1_BOVIN (Q2KI84    ), HARS1_DANRE (E9QI36    ), 
HARS1_HUMAN (P12081    ), HARS1_MESAU (P07178    ), HARS1_MOUSE (Q61035    ), 
HARS1_PONAB (Q5R4R2    ), SYEP_CRIGR  (Q7SIA2    ), SYEP_DROME  (P28668    ), 
SYEP_HUMAN  (P07814    ), SYEP_MOUSE  (Q8CGC7    ), SYGM1_ARATH (O23627    ), 
SYG_BOMMO   (Q04451    ), SYH_SCHPO   (O43011    ), SYMC_BOVIN  (Q2T9L8    ), 
SYMC_HUMAN  (P56192    ), SYMC_MOUSE  (Q68FL6    ), SYMC_XENLA  (Q6PF21    ), 
SYWC_BOVIN  (P17248    ), SYWC_HUMAN  (P23381    ), SYWC_MOUSE  (P32921    ), 
SYWC_PONAB  (Q5R4J1    ), SYWC_RABIT  (P23612    ), SYWC_RAT    (Q6P7B0    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 2 sequences 

SYNC1_ARATH (Q9SW96    ), SYNC3_ARATH (Q9SSK1    )


				
	

	

		UniProtKB/Swiss-Prot
'Partial' sequences		
		
			1 sequence
			


			
GARS_RAT    (Q5I0G4    )


				
	

	

		PDB
[Detailed view]		
		
			26 PDB
			


			1FYJ; 1R6T; 1X59; 2AZX; 2DJV; 2LW7; 2PME; 2PMF; 2Q5H; 2Q5I; 2QUH; 2QUI; 
			
				2QUJ; 2QUK; 2ZT5; 2ZT6; 2ZT7; 2ZT8; 2ZXF; 4G85; 4KQE; 4PHC; 4X5O; 5E6M; 
				5UJJ; 6O76
			
			

			» more

				
	





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