PROSITE entry PS00830
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General information about the entry
Entry name [info] | GREAB_2 |
Accession [info] | PS00830 |
Entry type [info] | PATTERN |
Date [info] |
01-OCT-1993 CREATED;
01-DEC-2001 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00651 |
Name and characterization of the entry
Description [info] | Prokaryotic transcription elongation factors signature 2. |
Pattern [info] |
S-x(2)-S-[PK]-[LIVMF]-[AG]-x-[SAGNE]-[LIVM]-[LIVY]-x(4)-[DNG]-[DE]. |
Numerical results [info]
Total number of hits | 275 in 275 different sequences |
Number of true positive hits | 274 in 274 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 1 |
Number of false negative sequences | 89 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 99.64 % |
Recall (true positives / (true positives + false negatives)) | 75.48 % |
Comments [info]
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
274 sequences
GFH1_THEAQ (Q8VQD7), GFH1_THET2 (Q72JT8), GFH1_THET8 (Q5SJG6), GREA2_LACPL (Q88WQ9), GREA_ACET2 (A3DJG6), GREA_ACIBS (B0VSL8), GREA_ACICJ (A5FWZ7), GREA_AGRFC (Q8UDE5), GREA_ALKEH (Q0A765), GREA_ALKOO (A8MLU4), GREA_ALLAM (B9JYZ7), GREA_AMOA5 (B3ESB4), GREA_ANASK (B4UCU9), GREA_BACAA (C3P968), GREA_BACAC (C3L5Y5), GREA_BACAN (Q81LK9), GREA_BACC1 (Q730F5), GREA_BACC7 (B7HQD7), GREA_BACCN (A7GT58), GREA_BACCQ (B9IYE4), GREA_BACCR (Q817Z6), GREA_BACCZ (Q634G5), GREA_BACHK (Q6HDE6), GREA_BACLD (Q65GT4), GREA_BACP2 (A8FFL6), GREA_BACSU (P80240), GREA_BACVZ (A7Z726), GREA_BARBK (A1UTG0), GREA_BARHE (Q6G2M7), GREA_BARQU (Q6FZ57), GREA_BART1 (A9IRC3), GREA_BAUCH (Q1LSK1), GREA_BLOPB (Q493U4), GREA_BORBU (O51157), GREA_BRUA1 (B2S6W5), GREA_BRUA2 (Q2YRN8), GREA_BRUA4 (A6WZH2), GREA_BRUAB (Q57C09), GREA_BRUC2 (A9M6H1), GREA_BRUMB (C0REE0), GREA_BRUME (P64271), GREA_BRUSI (B0CHU1), GREA_BRUSU (P64272), GREA_BUCA5 (B8D9G7), GREA_BUCAI (P57464), GREA_BUCAT (B8D7R9), GREA_CALS4 (Q8R7N0), GREA_CAMJ8 (A8FK75), GREA_CAMJD (A7H585), GREA_CAMJE (Q9PIK9), GREA_CAMJJ (A1VY10), GREA_CAMJR (Q5HWI0), GREA_CAMLR (B9KDP9), GREA_CHESB (Q11GG5), GREA_CHLL2 (B3EE12), GREA_CHLMU (Q9PLU1), GREA_CHLP8 (B3QPT8), GREA_CHLPB (B3EPH3), GREA_CHLPD (A1BHJ3), GREA_CHLPM (A4SFN0), GREA_CHLPN (Q9Z7G4), GREA_CHLT3 (B3QV56), GREA_CHLTE (Q8KCH5), GREA_CHLTR (O84641), GREA_CHRFK (A0M5U7), GREA_CLOAB (Q97EB6), GREA_CLOB1 (A7FZA6), GREA_CLOB6 (C3KVU0), GREA_CLOB8 (A6LPL4), GREA_CLOBA (B2UXU9), GREA_CLOBB (B2TI25), GREA_CLOBH (A5I7P5), GREA_CLOBJ (C1FNC6), GREA_CLOBK (B1IGJ3), GREA_CLOBL (A7GJB4), GREA_CLOBM (B1KTC2), GREA_CLOK1 (B9DY72), GREA_CLOK5 (A5N4L0), GREA_CLONN (A0PXN3), GREA_DESDA (B8IZM4), GREA_DESPS (Q6AL57), GREA_ECO57 (P0A6W7), GREA_ECOL6 (P0A6W6), GREA_ECOLI (P0A6W5), GREA_FLAJ1 (A5FJJ8), GREA_FLAPJ (A6H247), GREA_GEOKA (Q5KWV4), GREA_GEOTN (A4IR71), GREA_HAEDU (Q7VL00), GREA_HAEIN (P43881), GREA_HALH5 (Q9KDD7), GREA_HALHL (A1WXX6), GREA_HELAH (Q17WJ3), GREA_HELP2 (B6JM90), GREA_HELPG (B5Z7M6), GREA_HELPH (Q1CT06), GREA_HELPJ (P64276), GREA_HELPS (B2USW4), GREA_HELPY (P64275), GREA_HYDCU (Q31H97), GREA_HYPNA (Q0C4H1), GREA_LACP7 (A9KIP3), GREA_LEGPA (Q5X1R6), GREA_LEGPC (A5IAV2), GREA_LEGPH (Q5ZS95), GREA_LEGPL (Q5WTH5), GREA_LEUMM (Q03YY4), GREA_LIMF3 (B2GD90), GREA_LISIN (P64278), GREA_LISMC (C1KVE3), GREA_LISMF (Q71ZH4), GREA_LISMH (B8DE15), GREA_LISMO (P64277), GREA_LISW6 (A0AIU5), GREA_MACCJ (B9E6Y8), GREA_MAGMM (A0LC15), GREA_MARMM (Q0AMQ6), GREA_MARSD (C6BRV2), GREA_MESFL (Q6F215), GREA_MESH2 (Q5ZZL8), GREA_MESH7 (Q4A759), GREA_MESHJ (Q4A921), GREA_META1 (B3PM73), GREA_METCA (Q607B0), GREA_METNO (B8IBN8), GREA_METS4 (B0U8M0), GREA_MYCA9 (B1MKJ7), GREA_MYCBO (P64280), GREA_MYCBP (A1KHL8), GREA_MYCBT (C1AM72), GREA_MYCCT (Q2SSM5), GREA_MYCGE (P47524), GREA_MYCLB (B8ZT53), GREA_MYCLE (P46808), GREA_MYCPN (P78019), GREA_MYCPU (Q98Q16), GREA_MYCS2 (A0R2X1), GREA_MYCTA (A5U1C6), GREA_MYCTO (P9WMT8), GREA_MYCTU (P9WMT9), GREA_MYCVP (A1TE43), GREA_NAUPA (B9L822), GREA_NITOC (Q3J822), GREA_NITV2 (Q725M4), GREA_NITV4 (A1V9Q2), GREA_NITV9 (B8DJL8), GREA_NOVAD (Q2G656), GREA_OCEIH (Q8EPT6), GREA_OENOB (Q04EK0), GREA_ORITB (A5CE64), GREA_ORITI (B3CTQ6), GREA_PASMU (P57801), GREA_PELPB (B4SBF9), GREA_PELPD (A1AS07), GREA_PETMO (A9BFC0), GREA_PHEZH (B4RH54), GREA_PROA2 (B4S9B2), GREA_PSEAE (Q9HV46), GREA_PSESM (Q87WP5), GREA_PSYA2 (Q4FTJ2), GREA_PSYCK (Q1QCJ2), GREA_PSYIN (A1ST36), GREA_PSYWF (A5WDP3), GREA_RALN1 (Q8XZ82), GREA_RHIE6 (B3PUK3), GREA_RHIEC (Q2K600), GREA_RHIJ3 (Q1MDR7), GREA_RHILO (Q98I49), GREA_RHILV (O68546), GREA_RHILW (B5ZXG2), GREA_RHIME (P56894), GREA_RHIR8 (B9J753), GREA_RHIWR (A5V3E1), GREA_RHOE4 (C1A2Y4), GREA_RHORT (Q2RQB1), GREA_RICB8 (A8GUN3), GREA_RICBR (Q1RKI0), GREA_RICCK (A8F083), GREA_RICCN (Q92FZ5), GREA_RICFE (Q4UJS8), GREA_RICPR (P27640), GREA_RICTY (Q68VQ2), GREA_SACEN (A4F866), GREA_SALTI (P64282), GREA_SALTY (P64281), GREA_SHIFL (P0A6W8), GREA_SHOC1 (Q5WHM1), GREA_SINMW (A6U8X4), GREA_SOLM1 (C4XLU8), GREA_SPHAL (Q1GUG9), GREA_STAA1 (A7X319), GREA_STAA2 (A6U279), GREA_STAA3 (Q2FGB6), GREA_STAA8 (Q2FXW7), GREA_STAA9 (A5ITD5), GREA_STAAB (Q2YT68), GREA_STAAC (Q5HFF2), GREA_STAAE (A6QHF1), GREA_STAAM (P64283), GREA_STAAN (P99156), GREA_STAAR (Q6GG93), GREA_STAAS (Q6G8V9), GREA_STAAT (A8Z4E8), GREA_STAAW (P64284), GREA_STACT (B9DNJ3), GREA_STAEQ (Q5HNU0), GREA_STAES (Q8CSB3), GREA_STAS1 (Q49Y48), GREA_STRA1 (Q3JZS3), GREA_STRA3 (Q8E3U5), GREA_STRA5 (Q8DY80), GREA_STRCO (Q9ADK2), GREA_STRGC (A8AVM5), GREA_STRMU (Q8DSP7), GREA_STRP1 (P64285), GREA_STRP2 (Q04HS9), GREA_STRP3 (P0DB46), GREA_STRP4 (B5E681), GREA_STRP6 (Q5XDQ7), GREA_STRP7 (C1C8A8), GREA_STRP8 (P64287), GREA_STRPG (A2RGA4), GREA_STRPJ (B8ZLB8), GREA_STRPN (Q97PT2), GREA_STRPQ (P0DB47), GREA_STRR6 (Q8DP42), GREA_STRS2 (A4W3E8), GREA_STRSV (A3CPS3), GREA_STRSY (A4VX43), GREA_STRT1 (Q5M1J6), GREA_STRT2 (Q5M638), GREA_STRTD (Q03MH4), GREA_STRU0 (B9DTR1), GREA_STRZJ (C1CFA2), GREA_STRZP (C1CLL5), GREA_STRZT (C1CSD7), GREA_SYNAS (Q2LR03), GREA_SYNC1 (Q3A452), GREA_SYNFM (A0LK20), GREA_THEMA (Q9X232), GREA_THENN (B9K7Y7), GREA_THEP1 (A5ILE7), GREA_THEP3 (B0KCE3), GREA_THEPX (B0K5B9), GREA_THERP (B9L0L0), GREA_THESQ (B1LAX5), GREA_THEYD (B5YJG9), GREA_THISH (B8GNX7), GREA_TREPA (O83063), GREA_TREPS (B2S1W7), GREA_TRIL1 (B3E3H5), GREA_VIBCH (Q9KU89), GREA_VIBPA (Q87LZ2), GREA_VIBVU (Q8DBW9), GREA_YERPE (Q8ZBB3), GREA_YERPG (A9R594), GREA_ZYMMO (O50237), GREB_ECO57 (P64274), GREB_ECOL6 (P64273), GREB_ECOLI (P30128), GREB_HAEDU (Q7VM42), GREB_HAEIN (P43882), GREB_PASMU (P57802), GREB_PSEPK (Q88KH5), GREB_PSESM (Q883T5), GREB_SALTI (Q8Z217), GREB_SALTY (Q8ZLJ2), GREB_VIBCH (Q9KNL7), GREB_VIBPA (Q87TB8), GREB_VIBVU (Q8DDU7), GREB_VIBVY (Q7MPX6), GREB_XANAC (Q8PJ11), GREB_XANCP (Q8P7P8), GREB_YERPE (Q8ZJH2)» more
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UniProtKB/Swiss-Prot False negative sequences |
89 sequences
GREA1_LACPL (Q88ZS9), GREA_ACHLI (A9NGN4), GREA_ALIB4 (A8ESG0), GREA_AZOC5 (A8HR94), GREA_BEII9 (B2IHJ7), GREA_BRADU (Q89DR1), GREA_BRASB (A5ER96), GREA_BUCAP (Q8K9G6), GREA_BUCBP (P59489), GREA_BUCCC (Q057J4), GREA_CAMHC (A7I2X0), GREA_CAUSK (B0SZ84), GREA_CAUVC (Q9A4I3), GREA_CAUVN (B8H1V7), GREA_CERS1 (A3PGS3), GREA_CERS4 (Q3J5L0), GREA_CERS5 (A4WVE8), GREA_CERSK (B9KLF5), GREA_CHLAA (A9WK05), GREA_CHLAD (B8G358), GREA_CHLCH (Q3ATA7), GREA_CHLSY (B9LBX1), GREA_CLOD6 (Q181F4), GREA_CLOP1 (Q0TMI6), GREA_CLOPE (Q8XHL7), GREA_CLOPS (Q0SQ85), GREA_DEHM1 (Q3Z8E7), GREA_FINM2 (B0S216), GREA_FRAP2 (B0TYL2), GREA_FRAT1 (Q14GS9), GREA_FRATF (A7NDI1), GREA_FRATH (Q2A2C7), GREA_FRATM (B2SDF5), GREA_FRATN (A0Q5P2), GREA_FRATO (Q0BKZ4), GREA_FRATT (Q5NFC6), GREA_FRATW (A4IZ52), GREA_HAMD5 (C4K7K9), GREA_HELHP (Q7VJT9), GREA_JANSC (Q28V47), GREA_LACLA (Q9CHT2), GREA_LACLM (A2RIW3), GREA_LACLS (Q030Z7), GREA_LEUCK (B1MX52), GREA_MYCAP (A5IYH4), GREA_MYCGA (Q7NBS1), GREA_MYCMS (Q6MTU9), GREA_NEIMA (Q9JTT4), GREA_NEIMB (Q9JYU3), GREA_NEOSM (Q2GD99), GREA_NITHX (Q1QJF3), GREA_NITSB (A6Q4L2), GREA_NITWN (Q3SPT8), GREA_PARDP (A1AZ46), GREA_PELUB (Q4FPG2), GREA_POLNA (A1VN58), GREA_PSEPK (Q88DU7), GREA_RHOBA (Q7UVA0), GREA_RHOP5 (Q07JJ7), GREA_RHOPA (Q6N2H8), GREA_RHOPB (Q20ZR6), GREA_RHOPT (B3QJZ1), GREA_ROSCS (A7NFC5), GREA_ROSS1 (A5UPG5), GREA_RUEPO (Q5LXA4), GREA_RUTMC (A1AXD2), GREA_STAHJ (Q4L6V7), GREA_STRAW (Q82I57), GREA_STRPI (B1ICT9), GREA_SULNB (A6Q9U9), GREA_SYNWW (Q0B0N4), GREA_THEAB (B7ID86), GREA_THEM4 (A6LMS3), GREA_UREP2 (B1AIU2), GREA_UREPA (Q9PQI7), GREA_UREU1 (B5ZBB2), GREA_VEREI (A1WH11), GREA_VESOH (A5CVW9), GREA_WIGBR (Q8D2W9), GREA_WOLSU (Q7M9N2), GREA_XANAC (Q8PLD9), GREA_XANCP (Q9L4D3), GREA_XYLF2 (B2I844), GREA_XYLFA (Q9PEC0), GREA_XYLFM (B0U568), GREA_XYLFT (Q87EB7), GREB_NEIMA (Q9JVD0), GREB_NEIMB (Q9K0C5), GREB_PSEAE (Q9HZY5)» more |
UniProtKB/Swiss-Prot False positive sequences |
1 sequence
PCDH1_HUMAN (Q08174) |
PDB [Detailed view] |
10 PDB
1GRJ; 2ETN; 2EUL; 2F23; 2P4V; 3AOH; 3AOI; 4WQT; 6RI7; 6RIN |