PROSITE entry PS00853
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General information about the entry
Entry name [info] | BETA_ELIM_LYASE |
Accession [info] | PS00853 |
Entry type [info] | PATTERN |
Date [info] |
01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00667 |
Name and characterization of the entry
Description [info] | Beta-eliminating lyases pyridoxal-phosphate attachment site. |
Pattern [info] |
[YV]-x-D-x(3)-M-S-[GA]-K-K-D-x-[LIVMF]-[LIVMAG]-x-[LIVM]-G-G. |
Numerical results [info]
Total number of hits | 59 in 59 different sequences |
Number of true positive hits | 59 in 59 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 9 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 86.76 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Site [info] | pyridoxal_phosphate at position 9 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
59 sequences
BELY_TRIV3 (A2EYC4 ), TNAA1_SYMTH (P31014 ), TNAA2_SYMTH (P31015 ), TNAA_AERPE (Q9YCI2 ), TNAA_CALS4 (Q8R9K5 ), TNAA_CHRVO (Q7NYV9 ), TNAA_CITK8 (A8AKE2 ), TNAA_CLOTE (Q894M8 ), TNAA_ECO24 (A7ZTR3 ), TNAA_ECO27 (B7UMH5 ), TNAA_ECO45 (B7MGC9 ), TNAA_ECO55 (B7L853 ), TNAA_ECO57 (Q8XB34 ), TNAA_ECO5E (B5YXB2 ), TNAA_ECO7I (B7NR10 ), TNAA_ECO81 (B7N212 ), TNAA_ECO8A (B7M560 ), TNAA_ECOBW (C4ZYY6 ), TNAA_ECODH (B1X9T7 ), TNAA_ECOHS (A8A6H0 ), TNAA_ECOL5 (Q0TB00 ), TNAA_ECOL6 (Q8FBV2 ), TNAA_ECOLC (B1IX30 ), TNAA_ECOLI (P0A853 ), TNAA_ECOLU (B7NF25 ), TNAA_ECOSE (B6I3U1 ), TNAA_ECOSM (B1LL35 ), TNAA_ESCF3 (B7LK50 ), TNAA_HAEI8 (Q4QML4 ), TNAA_HAEIF (O07674 ), TNAA_HAES1 (Q0I3R5 ), TNAA_HALS3 (B0R7Q6 ), TNAA_HALSA (Q9HMV2 ), TNAA_HISS2 (B0UTZ3 ), TNAA_KLEAE (Q59342 ), TNAA_PASMU (Q9CL27 ), TNAA_PHOLL (Q7N8C9 ), TNAA_PROIN (Q9ZNA8 ), TNAA_PROVU (P28796 ), TNAA_RHOCA (O30971 ), TNAA_SHIB3 (B2TUR7 ), TNAA_SHIF8 (Q0SYP7 ), TNAA_SHIFL (P0A854 ), TNAA_VIBC3 (A5EYI0 ), TNAA_VIBCH (Q9KN05 ), TNAA_VIBCM (C3LUI5 ), TNAA_VIBPA (Q87JQ6 ), TNAA_VIBVU (Q8D5Q4 ), TNAA_VIBVY (Q7MCR1 ), TNAA_YERE8 (A1JJH3 ), TPL_CITFR (P31013 ), TPL_CITIN (P31012 ), TPL_CLOTE (Q897C2 ), TPL_ENTAG (P31011 ), TPL_FUSNN (Q8RHM6 ), TPL_NOSP7 (B2J908 ), TPL_PASMU (Q9CMK9 ), TPL_SYMS1 (O08501 ), TPL_SYMTH (Q08897 )» more
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UniProtKB/Swiss-Prot False negative sequences |
9 sequences
TNAA_AERHH (A0KJP3 ), TNAA_AERS4 (A4SNA7 ), TNAA_DESVH (Q729Z3 ), TNAA_DESVV (A1VC86 ), TNAA_HYPNA (Q0C406 ), TNAA_SALRD (Q2S1V4 ), TNAA_SHESH (A8G097 ), TPL_INTC7 (E6SFG5 ), TPL_LACSW (D9R201 )» more |
PDB [Detailed view] |
37 PDB
1AX4; 1C7G; 1TPL; 2C44; 2EZ1; 2EZ2; 2OQX; 2TPL; 2V0Y; 2V1P; 2VLF; 2VLH; 2YCN; 2YCP; 2YCT; 2YHK; 4UP2; 4W1Y; 4W4H; 5D8G; 5W19; 5W1B; 6DUR; 6DVX; 6DXV; 6DYT; 6DZ5; 6ECG; 6MLS; 6MME; 6MO3; 6MPD; 6MQQ; 6NV8; 7FJK; 7TCS; 7TDL » more |