PROSITE entry PS00853

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General information about the entry

Entry name [info]	BETA_ELIM_LYASE
Accession [info]	PS00853
Entry type [info]	PATTERN
Date [info]	01-OCT-1993 CREATED; 01-DEC-2004 DATA UPDATE; 03-MAY-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00667

Name and characterization of the entry

Description [info]	Beta-eliminating lyases pyridoxal-phosphate attachment site.
Pattern [info]	[YV]-x-D-x(3)-M-S-[GA]-K-K-D-x-[LIVMF]-[LIVMAG]-x-[LIVM]-G-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_02 which contains 569'516 sequence entries.

Total number of hits	59 in 59 different sequences
Number of true positive hits	59 in 59 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	9
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	86.76 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Site [info]	pyridoxal_phosphate at position 9
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

59 sequences

BELY_TRIV3  (A2EYC4    ), TNAA1_SYMTH (P31014    ), TNAA2_SYMTH (P31015    ),

TNAA_AERPE  (Q9YCI2    ), TNAA_CALS4  (Q8R9K5    ), TNAA_CHRVO  (Q7NYV9    ), 
TNAA_CITK8  (A8AKE2    ), TNAA_CLOTE  (Q894M8    ), TNAA_ECO24  (A7ZTR3    ), 
TNAA_ECO27  (B7UMH5    ), TNAA_ECO45  (B7MGC9    ), TNAA_ECO55  (B7L853    ), 
TNAA_ECO57  (Q8XB34    ), TNAA_ECO5E  (B5YXB2    ), TNAA_ECO7I  (B7NR10    ), 
TNAA_ECO81  (B7N212    ), TNAA_ECO8A  (B7M560    ), TNAA_ECOBW  (C4ZYY6    ), 
TNAA_ECODH  (B1X9T7    ), TNAA_ECOHS  (A8A6H0    ), TNAA_ECOL5  (Q0TB00    ), 
TNAA_ECOL6  (Q8FBV2    ), TNAA_ECOLC  (B1IX30    ), TNAA_ECOLI  (P0A853    ), 
TNAA_ECOLU  (B7NF25    ), TNAA_ECOSE  (B6I3U1    ), TNAA_ECOSM  (B1LL35    ), 
TNAA_ESCF3  (B7LK50    ), TNAA_HAEI8  (Q4QML4    ), TNAA_HAEIF  (O07674    ), 
TNAA_HAES1  (Q0I3R5    ), TNAA_HALS3  (B0R7Q6    ), TNAA_HALSA  (Q9HMV2    ), 
TNAA_HISS2  (B0UTZ3    ), TNAA_KLEAE  (Q59342    ), TNAA_PASMU  (Q9CL27    ), 
TNAA_PHOLL  (Q7N8C9    ), TNAA_PROIN  (Q9ZNA8    ), TNAA_PROVU  (P28796    ), 
TNAA_RHOCA  (O30971    ), TNAA_SHIB3  (B2TUR7    ), TNAA_SHIF8  (Q0SYP7    ), 
TNAA_SHIFL  (P0A854    ), TNAA_VIBC3  (A5EYI0    ), TNAA_VIBCH  (Q9KN05    ), 
TNAA_VIBCM  (C3LUI5    ), TNAA_VIBPA  (Q87JQ6    ), TNAA_VIBVU  (Q8D5Q4    ), 
TNAA_VIBVY  (Q7MCR1    ), TNAA_YERE8  (A1JJH3    ), TPL_CITFR   (P31013    ), 
TPL_CITIN   (P31012    ), TPL_CLOTE   (Q897C2    ), TPL_ENTAG   (P31011    ), 
TPL_FUSNN   (Q8RHM6    ), TPL_NOSP7   (B2J908    ), TPL_PASMU   (Q9CMK9    ), 
TPL_SYMS1   (O08501    ), TPL_SYMTH   (Q08897    )

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

9 sequences

TNAA_AERHH  (A0KJP3    ), TNAA_AERS4  (A4SNA7    ), TNAA_DESVH  (Q729Z3    ),

TNAA_DESVV  (A1VC86    ), TNAA_HYPNA  (Q0C406    ), TNAA_SALRD  (Q2S1V4    ), 
TNAA_SHESH  (A8G097    ), TPL_INTC7   (E6SFG5    ), TPL_LACSW   (D9R201    )

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PDB
[Detailed view]

37 PDB

1AX4; 1C7G; 1TPL; 2C44; 2EZ1; 2EZ2; 2OQX; 2TPL; 2V0Y; 2V1P; 2VLF; 2VLH; 2YCN; 2YCP; 2YCT; 2YHK; 4UP2; 4W1Y; 4W4H; 5D8G; 5W19; 5W1B; 6DUR; 6DVX; 6DXV; 6DYT; 6DZ5; 6ECG; 6MLS; 6MME; 6MO3; 6MPD; 6MQQ; 6NV8; 7FJK; 7TCS; 7TDL
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