PROSITE entry PS00875
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General information about the entry
Entry name [info] | T2SP_D |
Accession [info] | PS00875 |
Entry type [info] | PATTERN |
Date [info] |
01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00683 |
Name and characterization of the entry
Description [info] | Bacterial type II secretion system protein D signature. |
Pattern [info] |
[GRH]-[DEQKG]-[STVM]-[LIVMA](3)-[GA]-G-[LIVMFY]-x(11)-[LIVM]-P- [LIVMFYWGS]-[LIVMF]-[GSAE]-x-[LIVMS]-P-[LIVMFYW]-[LIVMFYWS]-x(2,3)-[LV]- [FK]. |
Numerical results [info]
Total number of hits | 33 in 33 different sequences |
Number of true positive hits | 33 in 33 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 1 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 97.06 % |
Comments [info]
Taxonomic range [info] | Bacteriophages, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
33 sequences
COME_HAEIN (P31772), G4P_BPF1(P03666), G4P_BPFD(P03664), G4P_BPI22 (P15420), G4P_BPIF1 (O80300), G4P_BPIKE (P03667), G4P_BPM13 (P03665), GSPD1_DICCH (P31700), GSPD2_DICD3 (Q01565), GSPD_AERHY (P31780), GSPD_AERSA (P45778), GSPD_ECOLI (P45758), GSPD_KLEPN (P15644), GSPD_PECCC (P31701), GSPD_PSEAE (P35818), GSPD_VIBCH (P45779), GSPD_XANCP (P29041), HOFQ_ECOLI (P34749), PILQ_NEIG1 (Q5FAD2), PILQ_NEIGO (P35819), PILQ_NEIMA (Q9JVW4), PILQ_NEIMB (Q70M91), PILQ_NEIMH (Q9ZHF3), PILQ_PSEAE (P34750), SCTC1_SALTY (P35672), SCTC2_SALT1 (D0ZWR9), SCTC_PSESY (Q01723), SCTC_RALN1 (Q52498), SCTC_SHIFL (Q04641), SCTC_SHISO (Q55293), SCTC_XANEU (P80151), SCTC_YEREN (Q01244), SCTC_YERPE (Q56974)» more
|
UniProtKB/Swiss-Prot False negative sequences |
1 sequence
DR774_DEIRA (Q9RW95) |
PDB [Detailed view] |
26 PDB
4AV2; 5TCQ; 5TCR; 5WLN; 5WQ7; 5WQ8; 5WQ9; 6DV3; 6DV6; 6I1X; 6PEE; 6PEM; 6PEP; 6Q14; 6Q15; 6Q16; 6RWK; 6VE2; 6VE3; 6VE4; 7AH9; 7AHI; 7OFH; 8AXK; 8AXL; 8AXN » more |