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PROSITE entry PS00875


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General information about the entry

Entry name [info] T2SP_D
Accession [info] PS00875
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE;
03-MAY-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00683

Name and characterization of the entry

Description [info] Bacterial type II secretion system protein D signature.
Pattern [info] 
[GRH]-[DEQKG]-[STVM]-[LIVMA](3)-[GA]-G-[LIVMFY]-x(11)-[LIVM]-P-
[LIVMFYWGS]-[LIVMF]-[GSAE]-x-[LIVMS]-P-[LIVMFYW]-[LIVMFYWS]-x(2,3)-[LV]-
[FK].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_02 which contains 569'516 sequence entries.


Total number of hits 33 in 33 different sequences
Number of true positive hits 33 in 33 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 97.06 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 33 sequences 

COME_HAEIN  (P31772    ), G4P_BPF1    (P03666    ), G4P_BPFD    (P03664    ), 

G4P_BPI22   (P15420    ), G4P_BPIF1   (O80300    ), G4P_BPIKE   (P03667    ), 
G4P_BPM13   (P03665    ), GSPD1_DICCH (P31700    ), GSPD2_DICD3 (Q01565    ), 
GSPD_AERHY  (P31780    ), GSPD_AERSA  (P45778    ), GSPD_ECOLI  (P45758    ), 
GSPD_KLEPN  (P15644    ), GSPD_PECCC  (P31701    ), GSPD_PSEAE  (P35818    ), 
GSPD_VIBCH  (P45779    ), GSPD_XANCP  (P29041    ), HOFQ_ECOLI  (P34749    ), 
PILQ_NEIG1  (Q5FAD2    ), PILQ_NEIGO  (P35819    ), PILQ_NEIMA  (Q9JVW4    ), 
PILQ_NEIMB  (Q70M91    ), PILQ_NEIMH  (Q9ZHF3    ), PILQ_PSEAE  (P34750    ), 
SCTC1_SALTY (P35672    ), SCTC2_SALT1 (D0ZWR9    ), SCTC_PSESY  (Q01723    ), 
SCTC_RALSO  (Q52498    ), SCTC_SHIFL  (Q04641    ), SCTC_SHISO  (Q55293    ), 
SCTC_XANEU  (P80151    ), SCTC_YEREN  (Q01244    ), SCTC_YERPE  (Q56974    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 1 sequence 

DR774_DEIRA (Q9RW95    )


				
	

	

		PDB
[Detailed view]		
		
			23 PDB
			


			4AV2; 5TCQ; 5TCR; 5WLN; 5WQ7; 5WQ8; 5WQ9; 6DV3; 6DV6; 6I1X; 6PEE; 6PEM; 
			
				6PEP; 6Q14; 6Q15; 6Q16; 6RWK; 6VE2; 6VE3; 6VE4; 7AH9; 7AHI; 7OFH
			
			

			» more