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| Entry: PS00888 |
General information about the entry
| Entry name [info] | CNMP_BINDING_1 |
| Accession [info] | PS00888 |
| Entry type [info] | PATTERN |
| Date [info] |
01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE; 17-JUN-2020 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00691 |
Name and characterization of the entry
| Description [info] | Cyclic nucleotide-binding domain signature 1. |
| Pattern [info] |
[LIVM]-[VIC]-x-{H}-G-[DENQTA]-x-[GAC]-{L}-x-[LIVMFY](4)-x(2)-G.
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Numerical results [info]
| Total number of hits | 165 in 118 different sequences |
| Number of true positive hits | 156 in 109 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 9 in 9 different sequences |
| Number of false negative sequences | 182 |
| Number of 'partial' sequences | 1 |
| Precision (true positives / (true positives + false positives)) | 94.55 % |
| Recall (true positives / (true positives + false negatives)) | 46.15 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 2 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
109 sequences
CNBD2_HUMAN (Q96M20 ), CNBD2_MACFA (Q95JR6 ), CNBD2_MOUSE (Q9D5U8 ), CNG1_CHICK (Q90805 ), CNG3_CHICK (Q90980 ), CNGA1_BOVIN (Q00194 ), CNGA1_CANLF (Q28279 ), CNGA1_HUMAN (P29973 ), CNGA1_MOUSE (P29974 ), CNGA1_RAT (Q62927 ), CNGA2_BOVIN (Q03041 ), CNGA2_HUMAN (Q16280 ), CNGA2_MOUSE (Q62398 ), CNGA2_RABIT (Q28718 ), CNGA2_RAT (Q00195 ), CNGA3_BOVIN (Q29441 ), CNGA3_HUMAN (Q16281 ), CNGA3_MOUSE (Q9JJZ8 ), CNGA4_HUMAN (Q8IV77 ), CNGA4_MOUSE (Q3UW12 ), CNGA4_RAT (Q64359 ), CNGA_DROME (Q24278 ), CNGB1_BOVIN (Q28181 ), CNGB1_HUMAN (Q14028 ), CNGB3_CANLF (Q8MJD7 ), CNGB3_HUMAN (Q9NQW8 ), CNGB3_MOUSE (Q9JJZ9 ), CNGK1_RHIEC (Q2K5E1 ), CNGK1_RHILO (Q98GN8 ), CNG_CAEEL (Q03611 ), CNG_ICTPU (P55934 ), CRP_ECO57 (P0ACK0 ), CRP_ECOL6 (P0ACJ9 ), CRP_ECOLI (P0ACJ8 ), CRP_HAEIN (P29281 ), CRP_KLEAE (P0A2T7 ), CRP_PASMU (O05689 ), CRP_SALTY (P0A2T6 ), CRP_SHIFL (P0ACK1 ), EGL4_CAEBR (A8X6H1 ), EGL4_CAEEL (O76360 ), GLSA2_BRADU (Q89KV2 ), HCN1_HUMAN (O60741 ), HCN1_MOUSE (O88704 ), HCN1_RABIT (Q9MZS1 ), HCN1_RAT (Q9JKB0 ), HCN2_HUMAN (Q9UL51 ), HCN2_MOUSE (O88703 ), HCN2_RAT (Q9JKA9 ), HCN4_HUMAN (Q9Y3Q4 ), HCN4_MOUSE (O70507 ), HCN4_RABIT (Q9TV66 ), HCN4_RAT (Q9JKA7 ), KAP0_BOVIN (P00514 ), KAP0_CHICK (Q5ZM91 ), KAP0_HUMAN (P10644 ), KAP0_MESAU (P86244 ), KAP0_MOUSE (Q9DBC7 ), KAP0_PIG (P07802 ), KAP0_PONAB (Q5REL1 ), KAP0_RAT (P09456 ), KAP1_HUMAN (P31321 ), KAP1_MOUSE (P12849 ), KAP1_RAT (P81377 ), KAP2_BOVIN (P00515 ), KAP2_HUMAN (P13861 ), KAP2_MOUSE (P12367 ), KAP2_RAT (P12368 ), KAP3_BOVIN (P31322 ), KAP3_HUMAN (P31323 ), KAP3_MOUSE (P31324 ), KAP3_RAT (P12369 ), KAPR1_DROME (P16905 ), KAPR2_DROME (P81900 ), KAPR_APLCA (P31319 ), KAPR_ASHGO (Q75AM2 ), KAPR_ASPFU (Q96UX3 ), KAPR_ASPNG (Q9C196 ), KAPR_BLAEM (P31320 ), KAPR_BLUGR (Q9HEP7 ), KAPR_CAEEL (P30625 ), KAPR_CANAL (Q9HEW1 ), KAPR_CANGA (Q6FQL6 ), KAPR_COLOR (Q9C1C2 ), KAPR_COLTR (O42794 ), KAPR_DEBHA (Q6BZG7 ), KAPR_DICDI (P05987 ), KAPR_EMENI (O59922 ), KAPR_HYPAT (Q86ZN7 ), KAPR_KLULA (Q6CPK7 ), KAPR_MAGO7 (O14448 ), KAPR_MUCCL (Q8TF77 ), KAPR_NEUCR (Q01386 ), KAPR_SCHPO (P36600 ), KAPR_STRPU (Q26619 ), KAPR_USTMA (P49605 ), KAPR_YARLI (Q6C2X0 ), KAPR_YEAST (P07278 ), KGP1_BOVIN (P00516 ), KGP1_DROME (Q03042 ), KGP1_HUMAN (Q13976 ), KGP1_MOUSE (P0C605 ), KGP24_DROME (Q03043 ), KGP25_DROME (P32023 ), KGP2_HUMAN (Q13237 ), KGP2_MOUSE (Q61410 ), KGP2_RAT (Q64595 ), NTE1_SCHPO (Q9USJ4 ), VFR_PSEAE (P55222 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
182 sequences
AKT1_ARATH (Q38998 ), AKT1_ORYSI (P0C550 ), AKT1_ORYSJ (Q0JKV1 ), AKT2_ARATH (Q38898 ), AKT2_ORYSJ (Q75HP9 ), AKT3_ORYSJ (Q8H569 ), AKT5_ARATH (Q9SCX5 ), AKT6_ARATH (Q8GXE6 ), ANR_PSEPH (O85222 ), ARCR_STAA1 (A7X715 ), ARCR_STAA2 (A6U515 ), ARCR_STAA3 (Q2FDM8 ), ARCR_STAA8 (Q2FUY1 ), ARCR_STAA9 (A5IW58 ), ARCR_STAAB (Q2YWH5 ), ARCR_STAAC (Q5HCR6 ), ARCR_STAAE (A6QKC0 ), ARCR_STAAM (Q99R06 ), ARCR_STAAN (Q7A381 ), ARCR_STAAR (Q6GDH1 ), ARCR_STAAS (Q6G643 ), ARCR_STAAT (A8Z5D0 ), ARCR_STAAW (Q8NUK9 ), ARCR_STAEQ (Q5HKU6 ), ARCR_STAES (Q8CML2 ), ARCR_STAHJ (Q4L9J7 ), CLP_XANAC (Q8PQ45 ), CLP_XANC5 (Q3BYB3 ), CLP_XANC8 (Q4UZF6 ), CLP_XANCB (B0RN01 ), CLP_XANCP (P22260 ), CLP_XANOM (Q2NYD9 ), CLP_XANOP (B2SL05 ), CLP_XANOR (Q5GV61 ), CMR_MYCTO (P9WMH4 ), CMR_MYCTU (P9WMH5 ), CN15A_MEDTR (G7IBJ4 ), CN15B_MEDTR (G7JND3 ), CN15C_MEDTR (A0A072VMJ3), CNBD1_HUMAN (Q8NA66 ), CNG10_ARATH (Q9LNJ0 ), CNG11_ARATH (Q9SKD6 ), CNG12_ARATH (Q8GWD2 ), CNG13_ARATH (Q9LD40 ), CNG14_ARATH (Q9SJA4 ), CNG15_ARATH (Q9SL29 ), CNG16_ARATH (Q9SU64 ), CNG17_ARATH (Q8L7Z0 ), CNG18_ARATH (Q9LEQ3 ), CNG19_ARATH (Q9LDR2 ), CNG20_ARATH (Q9LD37 ), CNGC1_ARATH (O65717 ), CNGC2_ARATH (O65718 ), CNGC3_ARATH (Q9SKD7 ), CNGC4_ARATH (Q94AS9 ), CNGC5_ARATH (Q8RWS9 ), CNGC6_ARATH (O82226 ), CNGC7_ARATH (Q9S9N5 ), CNGC8_ARATH (Q9FXH6 ), CNGC9_ARATH (Q9M0A4 ), CRPL_CORGL (Q79VI7 ), CRPL_MYCTO (P9WMH2 ), CRPL_MYCTU (P9WMH3 ), GBPC_DICDI (Q8MVR1 ), GBPD_DICDI (Q54S40 ), GORK_ARATH (Q94A76 ), HCN3_HUMAN (Q9P1Z3 ), HCN3_MOUSE (O88705 ), HCN3_RAT (Q9JKA8 ), KAT1_ARATH (Q39128 ), KAT1_ORYSJ (Q6K3T2 ), KAT2_ARATH (Q38849 ), KAT2_ORYSJ (Q5QNI1 ), KAT3_ARATH (P92960 ), KAT3_ORYSJ (Q5JM04 ), KAT4_ORYSJ (Q652U9 ), KAT5_ORYSJ (Q7XT08 ), KAT6_ORYSJ (A2ZX97 ), KCNAE_DROME (Q02280 ), KCNH1_BOVIN (O18965 ), KCNH1_HUMAN (O95259 ), KCNH1_MOUSE (Q60603 ), KCNH1_RAT (Q63472 ), KCNH2_CANLF (Q9TSZ3 ), KCNH2_HUMAN (Q12809 ), KCNH2_MOUSE (O35219 ), KCNH2_RABIT (Q8WNY2 ), KCNH2_RAT (O08962 ), KCNH3_HUMAN (Q9ULD8 ), KCNH3_MOUSE (Q9WVJ0 ), KCNH3_RAT (O89047 ), KCNH4_HUMAN (Q9UQ05 ), KCNH4_RAT (Q9R1T9 ), KCNH5_HUMAN (Q8NCM2 ), KCNH5_MOUSE (Q920E3 ), KCNH5_RAT (Q9EPI9 ), KCNH6_CHICK (Q9PT84 ), KCNH6_HUMAN (Q9H252 ), KCNH6_RAT (O54853 ), KCNH7_HUMAN (Q9NS40 ), KCNH7_MOUSE (Q9ER47 ), KCNH7_RAT (O54852 ), KCNH8_HUMAN (Q96L42 ), KCNH8_MOUSE (P59111 ), KCNH8_RAT (Q9QWS8 ), KGP1_RABIT (O77676 ), KOR1_ORYSJ (Q653P0 ), KOR2_ORYSJ (Q7XUW4 ), LDRP_THET2 (Q746J8 ), LDRP_THET8 (Q53W63 ), NTE1_ASHGO (Q756Z0 ), NTE1_ASPCL (A1C9L6 ), NTE1_ASPFU (Q4WA15 ), NTE1_ASPNC (A2R350 ), NTE1_ASPOR (Q2UDH2 ), NTE1_ASPTN (Q0CNC7 ), NTE1_CANAL (Q5A368 ), NTE1_CANGA (Q6FKJ1 ), NTE1_CHAGB (Q2H0D3 ), NTE1_COCIM (Q1DLC7 ), NTE1_CRYNB (P0CP37 ), NTE1_CRYNJ (P0CP36 ), NTE1_DEBHA (Q6BQK9 ), NTE1_EMENI (Q5BAE9 ), NTE1_KLULA (Q6CWC2 ), NTE1_LODEL (A5E708 ), NTE1_MAGO7 (A4QVZ8 ), NTE1_NEOFI (A1D9Y2 ), NTE1_NEUCR (Q7S8J1 ), NTE1_PHANO (Q0UJ42 ), NTE1_PICGU (A5DHA3 ), NTE1_PICST (A3LYZ4 ), NTE1_USTMA (Q4PF83 ), NTE1_YARLI (Q6CF18 ), NTE1_YEAST (Q04958 ), P2C19_ARATH (Q9SL76 ), PAT_MYCS2 (A0R3F9 ), PAT_MYCTU (O05581 ), PDE5_DICDI (Q8MLZ3 ), PDE6_DICDI (Q8MM62 ), PLPL6_CAEEL (Q21534 ), PLPL6_HUMAN (Q8IY17 ), PLPL6_MOUSE (Q3TRM4 ), PLPL6_PONAB (Q5RDS0 ), PLPL7_CAEEL (Q02331 ), PLPL7_HUMAN (Q6ZV29 ), PLPL7_MOUSE (A2AJ88 ), PLPL7_RAT (Q5BK26 ), RPGF1_CAEEL (P34578 ), RPGF2_BOVIN (F1MSG6 ), RPGF2_CANLF (F1PBJ0 ), RPGF2_HUMAN (Q9Y4G8 ), RPGF2_MOUSE (Q8CHG7 ), RPGF2_RAT (F1M386 ), RPGF3_HUMAN (O95398 ), RPGF3_MOUSE (Q8VCC8 ), RPGF3_RAT (Q9Z1C8 ), RPGF4_HUMAN (Q8WZA2 ), RPGF4_MOUSE (Q9EQZ6 ), RPGF_CAEEL (G5EDB9 ), SDRP_THET8 (Q5SIL0 ), SKOR_ARATH (Q9M8S6 ), SL9C1_HUMAN (Q4G0N8 ), SL9C1_MOUSE (Q6UJY2 ), SL9C2_HUMAN (Q5TAH2 ), SWS_DROAN (B3MRI9 ), SWS_DROER (B3NY03 ), SWS_DROGR (B4JLX2 ), SWS_DROME (Q9U969 ), SWS_DROMO (B4L535 ), SWS_DROPE (B4H3U8 ), SWS_DROPS (B5DKS8 ), SWS_DROSE (B4IL64 ), SWS_DROVI (B4M709 ), SWS_DROWI (B4N1W9 ), SWS_DROYA (B4Q0P3 ), Y073_MYCTO (P9WQK4 ), Y073_MYCTU (P9WQK5 ), Y2565_MYCTO (P9WIY6 ), Y2565_MYCTU (P9WIY7 ), Y2594_MYCBO (P0A643 ), Y4233_RHOPA (Q02006 )» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
KAP2_PIG (P05207 ) |
| UniProtKB/Swiss-Prot False positive sequences |
9 sequences
ALG11_HUMAN (Q2TAA5 ), ALG11_PONAB (Q5R7Z6 ), CARA_SULTO (Q970U8 ), CBIMQ_METLZ (A2SSD6 ), DAPB_MAGO7 (A4QYQ5 ), SFSA_GEOMG (Q39WK9 ), SFSA_GEOSL (P61664 ), SFSA_TRIEI (Q111B4 ), SYT15_HUMAN (Q9BQS2 )» more |
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