PROSITE entry PS00914
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General information about the entry
Entry name [info] | SYNTAXIN |
Accession [info] | PS00914 |
Entry type [info] | PATTERN |
Date [info] |
01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00709 |
Name and characterization of the entry
Description [info] | Syntaxin / epimorphin family signature. |
Pattern [info] |
[RQLKA]-x(3)-[LIVMAW]-x(2)-[LIVM]-[ESHLKAGQV]-x(2)-[LIVMT]-x-[DEVMNRAST]- [LIVMT]-x(2)-[LIVMQ]-[FSAQGVM]-x(2)-[LIVMF]-x(3)-[LIVT]-x(2)-Q- [GADEQVST]-x(2)-[LIVMA]-[DNQTEI]-x-[LIVMF]-[DESVHAG]-x(2,3)-[LIVM]. |
Numerical results [info]
Total number of hits | 103 in 103 different sequences |
Number of true positive hits | 103 in 103 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 14 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 88.03 % |
Comments [info]
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
103 sequences
PEP12_YEAST (P32854), PSY1_SCHPO (Q9USH7), SED5_YEAST (Q01590), SSO1_YEAST (P32867), SSO2_CANAL (Q59YF0), SSO2_YEAST (P39926), STX10_HUMAN (O60499), STX11_HUMAN (O75558), STX11_MOUSE (Q9D3G5), STX12_HUMAN (Q86Y82), STX12_MOUSE (Q9ER00), STX12_PONAB (Q5RBW6), STX12_RAT (G3V7P1), STX16_HUMAN (O14662), STX16_MOUSE (Q8BVI5), STX17_BOVIN (Q5E9Y2), STX17_HUMAN (P56962), STX17_MOUSE (Q9D0I4), STX17_RAT (Q9Z158), STX18_DANRE (Q4VBI7), STX18_HUMAN (Q9P2W9), STX18_MOUSE (Q8VDS8), STX18_PONAB (Q5REB4), STX18_RAT (Q68FW4), STX19_BOVIN (Q0VCI2), STX19_HUMAN (Q8N4C7), STX19_MOUSE (Q8R1Q0), STX19_PONAB (Q5RAL4), STX1A_ANOGA (Q5TX47), STX1A_BOVIN (P32850), STX1A_CAEBR (A8WVD0), STX1A_CAEEL (O16000), STX1A_DROME (Q24547), STX1A_HUMAN (Q16623), STX1A_MOUSE (O35526), STX1A_PONAB (Q5R4L2), STX1A_RAT (P32851), STX1B_BOVIN (P61267), STX1B_HUMAN (P61266), STX1B_MOUSE (P61264), STX1B_RAT (P61265), STX1B_SHEEP (P61268), STX2_CAEEL (Q20574), STX2_HUMAN (P32856), STX2_MOUSE (Q00262), STX2_RAT(P50279), STX3_CAEEL (Q20024), STX3_HUMAN (Q13277), STX3_MOUSE (Q64704), STX3_RAT(Q08849), STX4_BOVIN (Q3SWZ3), STX4_CAEEL (P91409), STX4_HUMAN (Q12846), STX4_MOUSE (P70452), STX4_RAT(Q08850), STX5_BOVIN (Q08DB5), STX5_CAEEL (Q20797), STX5_DROME (Q24509), STX5_HUMAN (Q13190), STX5_MOUSE (Q8K1E0), STX5_RAT(Q08851), STX6_CAEEL (P83528), STX6_CHICK (Q5ZL19), STX6_HUMAN (O43752), STX6_MOUSE (Q9JKK1), STX6_PONAB (Q5R6Q2), STX6_RAT(Q63635), STX7A_DICDI (Q54JY7), STX7_BOVIN (Q3ZBT5), STX7_HUMAN (O15400), STX7_MOUSE (O70439), STX7_PONAB (Q5R602), STX7_RAT(O70257), STX_APLCA (Q16932), SY111_ARATH (Q42374), SY111_ORYSJ (Q84R43), SY112_ARATH (Q9ZPV9), SY121_ARATH (Q9ZSD4), SY121_ORYSJ (Q6F3B4), SY122_ARATH (Q9SVC2), SY123_ARATH (Q9ZQZ8), SY124_ARATH (O64791), SY125_ARATH (Q9SXB0), SY131_ARATH (Q9SRV7), SY132_ARATH (Q8VZU2), SY132_ORYSJ (Q7XIE2), SYP21_ARATH (Q39233), SYP22_ARATH (P93654), SYP23_ARATH (O04378), SYP31_ARATH (Q9FFK1), SYP32_ARATH (Q9LK09), SYP41_ARATH (O65359), SYP42_ARATH (Q9SWH4), SYP43_ARATH (Q9SUJ1), SYP51_ARATH (Q9SA23), SYP52_ARATH (Q94KK7), SYP61_ARATH (Q946Y7), SYP71_ARATH (Q9SF29), SYP72_ARATH (Q94KK6), SYP73_ARATH (Q94KK5), TLG1_YEAST (Q03322), TLG2_YEAST (Q08144), VAM3_YEAST (Q12241)» more
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UniProtKB/Swiss-Prot False negative sequences |
14 sequences
FSV1_SCHPO (O14222), PEP12_SCHPO (O94651), SED5_SCHPO (O13644), STX8A_DICDI (Q553P5), STX8_BOVIN (Q3T075), STX8_HUMAN (Q9UNK0), STX8_MOUSE (O88983), STX8_RAT(Q9Z2Q7), SYP24_ARATH (Q9C615), SYP81_ARATH (P59277), TLG1_SCHPO (Q9HGN3), TLG2_SCHPO (Q9P6P1), UFE1_SCHPO (O94531), UFE1_YEAST (P41834)» more |
PDB [Detailed view] |
38 PDB
1GL2; 1HVV; 1JTH; 1KIL; 1N7S; 1SFC; 1URQ; 2M8R; 2N1T; 2NPS; 3B5N; 3C98; 3HD7; 3IPD; 3J96; 3J97; 3J98; 3J99; 3RK2; 3RK3; 3RL0; 4JEH; 4JEU; 5CCG; 5CCH; 5CCI; 5KJ7; 5KJ8; 5W5C; 5W5D; 6IP1; 6MDM; 6MDN; 6MTI; 6WVW; 7BV6; 7Q83; 7XSJ » more |