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PROSITE entry PS00940


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General information about the entry

Entry name [info] GAMMA_THIONIN
Accession [info] PS00940
Entry type [info] PATTERN
Date [info] 01-JUN-1994 CREATED;
01-DEC-2004 DATA UPDATE;
13-SEP-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00725

Name and characterization of the entry

Description [info] Gamma-thionins family signature.
Pattern [info] 
[KRGAQS]-x-C-x(3)-[SVA]-x(2)-[FYWH]-x(1,2)-[GF]-x-C-x(5)-C-x(3)-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_04 which contains 570'157 sequence entries.


Total number of hits 80 in 80 different sequences
Number of true positive hits 80 in 80 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 91.95 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] disulfide at position 3
Site [info] disulfide at position 11
Site [info] disulfide at position 13
Site [info] disulfide at position 15
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 80 sequences 

AMPD1_STEME (C0HL82), AMPD2_STEME (C0HL83), CAL1_ORYSJ  (Q6K209), 

DEF01_ARATH (Q9ZUL7), DEF02_ARATH (Q39182), DEF03_ARATH (P82781), 
DEF04_ARATH (Q41914), DEF05_ARATH (Q9C947), DEF07_ARATH (P82784), 
DEF08_ARATH (P82782), DEF09_ARATH (P82785), DEF10_ARATH (Q9ZUL8), 
DEF11_TRIKH (P84965), DEF12_TRIMO (P84964), DEF13_ARATH (P30224), 
DEF14_ARATH (O80995), DEF15_ARATH (O80994), DEF16_ARATH (Q9FI23), 
DEF17_ARATH (Q9FI22), DEF19_ARATH (P82787), DEF1_ARAHY  (B3EWP3), 
DEF1_BRACM  (P30227), DEF1_BRANA  (P69240), DEF1_CAPAN  (Q43413), 
DEF1_ECHCG  (P86518), DEF1_HEUSA  (P0C8Y5), DEF1_HORVU  (P20230), 
DEF1_MAIZE  (P81008), DEF1_NICPA  (O24115), DEF1_NIGSA  (P86972), 
DEF1_PEA(P81929), DEF1_PINSY  (A4L7R7), DEF1_RAPSA  (P69241), 
DEF1_SINAL  (P30231), DEF1_SORBI  (P21923), DEF1_TRIKH  (P84963), 
DEF1_VICFA  (P81456), DEF1_VIGUN  (P83399), DEF1_WHEAT  (P20158), 
DEF21_SORBI (Q09198), DEF2A_SINAL (P30232), DEF2B_SINAL (Q10989), 
DEF2_ARAHY  (B3EWP4), DEF2_BRACM  (P30228), DEF2_CAPAN  (O65740), 
DEF2_ECHCG  (P86519), DEF2_MAIZE  (P81009), DEF2_NIGSA  (P86973), 
DEF2_PEA(P81930), DEF2_PINSY  (A4L7R8), DEF2_RAPSA  (P30230), 
DEF2_SORBI  (P21924), DEF2_TRIKH  (P84968), DEF2_VICFA  (P81457), 
DEF2_WHEAT  (P20159), DEF3_ARAHY  (C0HJZ1), DEF3_BRANA  (Q39313), 
DEF3_RAPSA  (O24332), DEF3_SORBI  (P21925), DEF3_TRIKH  (P84970), 
DEF4_RAPSA  (O24331), DEF4_TRIKH  (P84971), DEF5_TRIKH  (P84966), 
DEF61_TRIKH (P84969), DEF6_TRIKH  (P84967), DEFD2_SPIOL (P81571), 
DEFD7_SPIOL (P81573), DEF_LENCC   (B3F051), DEF_NELNU   (A3FPF2), 
DEF_NICAL   (Q8GTM0), DEF_NICSU   (C0HK49), DEF_PETIN   (Q40901), 
DEF_SOYBN   (Q07502), DEF_TOBAC   (P32026), DEF_VIGUN   (P18646), 
DF322_SOLTU (P20346), DFAX1_BETVU (P81493), DFAX2_BETVU (P82010), 
DFSD2_HELAN (P82659), SF18_HELAN  (P22357)
» more

UniProtKB/Swiss-Prot
False negative sequences		 7 sequences 

ALL1_ARTVU  (Q84ZX5), DEF06_ARATH (Q9FFP8), DEF18_ARATH (Q9FZ31), 

DEF2_VIGUN  (P84920), DEF_GYMCO   (B5LZ79), DF230_PEA   (Q01783), 
DF39_PEA(Q01784)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 3 sequences 

DEF2_BRANA  (P30226), DEF_PHACN   (P84785), DEF_VIGUS   (P84868)


				
	

	

		PDB
[Detailed view]		
		
			18 PDB
			


			1AYJ; 1GPS; 1GPT; 1JKZ; 1MR4; 2LJ7; 2N2Q; 2N2R; 4AAZ; 4AB0; 4CQK; 5KK4; 
			
				5NCE; 5VYP; 6B55; 6LCQ; 6NOM; 7LNS
			
			

			» more