PROSITE entry PS00940
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General information about the entry
Entry name [info] | GAMMA_THIONIN |
Accession [info] | PS00940 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1994 CREATED;
01-DEC-2004 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00725 |
Name and characterization of the entry
Description [info] | Gamma-thionins family signature. |
Pattern [info] |
[KRGAQS]-x-C-x(3)-[SVA]-x(2)-[FYWH]-x(1,2)-[GF]-x-C-x(5)-C-x(3)-C. |
Numerical results [info]
Total number of hits | 80 in 80 different sequences |
Number of true positive hits | 80 in 80 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 7 |
Number of 'partial' sequences | 3 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 91.95 % |
Comments [info]
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 1 |
Site [info] | disulfide at position 3 |
Site [info] | disulfide at position 11 |
Site [info] | disulfide at position 13 |
Site [info] | disulfide at position 15 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
80 sequences
AMPD1_STEME (C0HL82), AMPD2_STEME (C0HL83), CAL1_ORYSJ (Q6K209), DEF01_ARATH (Q9ZUL7), DEF02_ARATH (Q39182), DEF03_ARATH (P82781), DEF04_ARATH (Q41914), DEF05_ARATH (Q9C947), DEF07_ARATH (P82784), DEF08_ARATH (P82782), DEF09_ARATH (P82785), DEF10_ARATH (Q9ZUL8), DEF11_TRIKH (P84965), DEF12_TRIMO (P84964), DEF13_ARATH (P30224), DEF14_ARATH (O80995), DEF15_ARATH (O80994), DEF16_ARATH (Q9FI23), DEF17_ARATH (Q9FI22), DEF19_ARATH (P82787), DEF1_ARAHY (B3EWP3), DEF1_BRACM (P30227), DEF1_BRANA (P69240), DEF1_CAPAN (Q43413), DEF1_ECHCG (P86518), DEF1_HEUSA (P0C8Y5), DEF1_HORVU (P20230), DEF1_MAIZE (P81008), DEF1_NICPA (O24115), DEF1_NIGSA (P86972), DEF1_PEA(P81929), DEF1_PINSY (A4L7R7), DEF1_RAPSA (P69241), DEF1_SINAL (P30231), DEF1_SORBI (P21923), DEF1_TRIKH (P84963), DEF1_VICFA (P81456), DEF1_VIGUN (P83399), DEF1_WHEAT (P20158), DEF21_SORBI (Q09198), DEF2A_SINAL (P30232), DEF2B_SINAL (Q10989), DEF2_ARAHY (B3EWP4), DEF2_BRACM (P30228), DEF2_CAPAN (O65740), DEF2_ECHCG (P86519), DEF2_MAIZE (P81009), DEF2_NIGSA (P86973), DEF2_PEA(P81930), DEF2_PINSY (A4L7R8), DEF2_RAPSA (P30230), DEF2_SORBI (P21924), DEF2_TRIKH (P84968), DEF2_VICFA (P81457), DEF2_WHEAT (P20159), DEF3_ARAHY (C0HJZ1), DEF3_BRANA (Q39313), DEF3_RAPSA (O24332), DEF3_SORBI (P21925), DEF3_TRIKH (P84970), DEF4_RAPSA (O24331), DEF4_TRIKH (P84971), DEF5_TRIKH (P84966), DEF61_TRIKH (P84969), DEF6_TRIKH (P84967), DEFD2_SPIOL (P81571), DEFD7_SPIOL (P81573), DEF_LENCC (B3F051), DEF_NELNU (A3FPF2), DEF_NICAL (Q8GTM0), DEF_NICSU (C0HK49), DEF_PETIN (Q40901), DEF_SOYBN (Q07502), DEF_TOBAC (P32026), DEF_VIGUN (P18646), DF322_SOLTU (P20346), DFAX1_BETVU (P81493), DFAX2_BETVU (P82010), DFSD2_HELAN (P82659), SF18_HELAN (P22357)» more
|
UniProtKB/Swiss-Prot False negative sequences |
7 sequences
ALL1_ARTVU (Q84ZX5), DEF06_ARATH (Q9FFP8), DEF18_ARATH (Q9FZ31), DEF2_VIGUN (P84920), DEF_GYMCO (B5LZ79), DF230_PEA (Q01783), DF39_PEA(Q01784)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
3 sequences
DEF2_BRANA (P30226), DEF_PHACN (P84785), DEF_VIGUS (P84868) |
PDB [Detailed view] |
18 PDB
1AYJ; 1GPS; 1GPT; 1JKZ; 1MR4; 2LJ7; 2N2Q; 2N2R; 4AAZ; 4AB0; 4CQK; 5KK4; 5NCE; 5VYP; 6B55; 6LCQ; 6NOM; 7LNS » more |