PROSITE entry PS00982
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General information about the entry
| Entry name [info] | PHYTOENE_DH |
| Accession [info] | PS00982 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUN-1994 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00755 |
Name and characterization of the entry
| Description [info] | Bacterial-type phytoene dehydrogenase signature. |
| Pattern [info] |
[NG]-x-[FYWV]-[LIVMF]-x-G-[AGC]-[GS]-[TA]-[HQT]-P-G-[STAV]-G-[LIVM]- x(5)-[GS]. |
Numerical results [info]
| Total number of hits | 16 in 16 different sequences |
| Number of true positive hits | 16 in 16 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 11 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 59.26 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
16 sequences
CARB_GIBF5 (S0EPU6), CARB_GIBFU (Q8X0Z0), CRTD_CERS4 (Q01671), CRTD_RHOCB (P17059), CRTI_CERNC (P48537), CRTI_CERS4 (P54980), CRTI_MYXXA (Q02861), CRTI_NEUCR (P21334), CRTI_PANAN (P21685), CRTI_PARSN (P54978), CRTI_PHYB8 (P54982), CRTI_PSEVU (P22871), CRTI_RHOCB (P17054), CRTI_STRGR (P54981), CRTJ_MYXXA (P54979), CRTN_METSP (Q4VKV1)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
11 sequences
CRTN_STAA3 (Q2FDU6), CRTN_STAA8 (Q2FV60), CRTN_STAAB (Q2YWE8), CRTN_STAAC (Q5HCY9), CRTN_STAAE (O07855), CRTN_STAAM (Q99R76), CRTN_STAAN (Q7A3E2), CRTN_STAAR (Q6GDN7), CRTN_STAAS (Q6G6B3), CRTN_STAAW (Q8NUQ6), CRTN_STAHJ (Q4L975)» more |
| PDB [Detailed view] |
1 PDB
4DGK |