PROSITE entry PS00990

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General information about the entry

Entry name [info]	CLAT_ADAPTOR_M_1
Accession [info]	PS00990
Entry type [info]	PATTERN
Date [info]	01-JUN-1994 CREATED; 01-NOV-1997 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00761

Name and characterization of the entry

Description [info]	Clathrin adaptor complexes medium chain signature 1.
Pattern [info]	[IVT]-[GSP]-W-R-x(2,3)-[GAD]-x(2)-[HY]-x(2)-N-x-[LIVMAFY](3)-D-[LIVM]- [LIVMT]-E.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	42 in 42 different sequences
Number of true positive hits	42 in 42 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	6
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	87.50 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

42 sequences

AP1M1_BOVIN (Q2KJ81), AP1M1_HUMAN (Q9BXS5), AP1M1_MOUSE (P35585),

AP1M1_RAT   (Q32Q06), AP1M1_SCHPO (Q9HFE5), AP1M1_YEAST (Q00776), 
AP1M2_ARATH (O22715), AP1M2_BOVIN (Q3SYW1), AP1M2_HUMAN (Q9Y6Q5), 
AP1M2_MOUSE (Q9WVP1), AP1M2_RAT   (D3ZRP6), AP1M_CAEEL  (P35602), 
AP1M_DICDI  (Q54HS9), AP1M_DIPOM  (P47795), AP2M1_BOVIN (Q3ZC13), 
AP2M1_CHICK (Q5ZMP6), AP2M1_HUMAN (Q96CW1), AP2M1_MACFA (Q4R706), 
AP2M1_MOUSE (P84091), AP2M1_PONAB (Q5NVF7), AP2M1_RAT   (P84092), 
AP2M1_XENLA (Q801Q8), AP2M1_XENTR (Q6P856), AP2MA_DANRE (Q6NWK2), 
AP2MB_DANRE (Q7ZW98), AP2M_ARATH  (O23140), AP2M_CAEEL  (P35603), 
AP2M_DICDI  (P54672), AP2M_SCHPO  (Q09718), AP3M1_BOVIN (Q24K11), 
AP3M1_CHICK (Q5ZMP7), AP3M1_HUMAN (Q9Y2T2), AP3M1_MOUSE (Q9JKC8), 
AP3M1_PONAB (Q5R478), AP3M1_RAT   (P53676), AP3M2_HUMAN (P53677), 
AP3M2_MOUSE (Q8R2R9), AP3M2_RAT   (P53678), AP3M_ARATH  (F4I562), 
AP3M_EREGS  (Q750L8), AP3M_YEAST  (P38153), APM2_YEAST  (P38700)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

6 sequences

AP3M_DICDI  (Q9GPF1), AP4M1_BOVIN (Q29RY8), AP4M1_HUMAN (O00189),

AP4M1_MOUSE (Q9JKC7), AP4M1_RAT   (Q2PWT8), AP4M_DICDI  (Q9GPF0)

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PDB
[Detailed view]

63 PDB

1BW8; 1BXX; 1HES; 1I31; 1W63; 2BP5; 2JKR; 2JKT; 2PR9; 2VGL; 2XA7; 3H85; 4HMY; 4IKN; 4P6Z; 4UQI; 5C7Z; 5FPI; 5WRK; 5WRL; 5WRM; 6CM9; 6CRI; 6D83; 6D84; 6DFF; 6OWO; 6OXL; 6QH5; 6QH6; 6QH7; 6YAE; 6YAF; 6YAH; 7OFP; 7OG1; 7OHO; 7OHZ; 7OI5; 7OIQ; 7P3X; 7P3Y; 7P3Z; 7R4H; 7RW8; 7RW9; 7RWA; 7RWB; 7RWC; 7UX3; 7Z5C; 8D4C; 8D4D; 8D4E; 8D4F; 8D4G; 8D9R; 8D9S; 8D9T; 8D9U; 8D9V; 8D9W; 8T1O
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