PROSITE entry PS01049
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General information about the entry
| Entry name [info] | YJEF_C_1 |
| Accession [info] | PS01049 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-NOV-1997 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00806 |
Name and characterization of the entry
| Description [info] | YjeF C-terminal domain signature 1. |
| Pattern [info] |
[SAV]-[IVW]-[LVA]-[LIV]-G-[PNS]-G-L-[GP]-x-[DENQT]. |
Numerical results [info]
| Total number of hits | 24 in 24 different sequences |
| Number of true positive hits | 24 in 24 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 67 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 26.37 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
24 sequences
NNRD_BACSU (P94368), NNRD_CAEBR (A8X354), NNRD_CAEEL (P32740), NNRD_DANRE (F1Q575), NNRD_DROME (Q9VVW8), NNRD_DROPS (B5DHB2), NNRD_ENTFA (Q833Y3), NNRD_IXOSC (B7PBI5), NNRD_LACLA (Q9CIU7), NNRD_LACPL (F9UN92), NNRD_PHANO (Q0UVK8), NNRD_SCHPO (O94347), NNRD_STAA8 (Q2G2P8), NNRD_STRR6 (Q8DQD2), NNRD_STRTR (P96051), NNRD_USTMA (Q4P219), NNRD_YEAST (P36059), NNR_ECOLI (P31806), NNR_METJA (Q58981), NNR_MYCLE (P37391), NNR_MYCTO (P9WF10), NNR_MYCTU (P9WF11), NNR_SYNY3 (P74217), NNR_THEMA (Q9X024)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
67 sequences
NNRD1_PUCGT (E3LAQ9), NNRD2_PUCGT (E3L9T1), NNRD_AEDAE (Q17NP0), NNRD_AJECG (C0NFV9), NNRD_ANODA (E3XDZ8), NNRD_ARATH (Q94AF2), NNRD_ASPFU (Q4X1F8), NNRD_BATDJ (F4NZ38), NNRD_BORPE (Q7VU32), NNRD_BOVIN (E1BNQ4), NNRD_CANAL (Q59M69), NNRD_CANAW (C4YSU5), NNRD_CANLF (E2QUI9), NNRD_CENSY (A0RU82), NNRD_CIOIN (F6RCC2), NNRD_COPC7 (A8N8Z0), NNRD_CRYNJ (Q5K8L4), NNRD_DICDI (Q54FJ9), NNRD_EMENI (Q5B0D6), NNRD_ENTH1 (C4LZV8), NNRD_FLAPJ (A6GXW4), NNRD_FUSV7 (C7YKN8), NNRD_HALTV (D2RXF6), NNRD_HETP5 (D3BMU4), NNRD_HUMAN (Q8IW45), NNRD_LISMO (Q8Y6R2), NNRD_MACMU (F7E727), NNRD_MOUSE (Q9CZ42), NNRD_NATMM (D3SQW0), NNRD_NEIG1 (Q5F8G9), NNRD_NEIMB (Q9JRZ9), NNRD_NEMVE (A7RRZ8), NNRD_NEUCR (Q7SHU9), NNRD_NITMS (A9A498), NNRD_PEDHC (E0VSF4), NNRD_PHATC (B7FXE8), NNRD_PHYPA (A9RY03), NNRD_PONAB (Q5R824), NNRD_RAT(D4AAT7), NNRD_RHOBA (Q7UFW7), NNRD_SORBI (C5Y210), NNRD_VITVI (F6HDM2), NNRD_XANCP (Q8PBP3), NNR_AQUAE (O67377), NNR_ARCFU (O29407), NNR_CORGL (Q8NSS3), NNR_COXBU (Q83CM5), NNR_DICTD (B8E2P6), NNR_GLOVI (Q7NIE6), NNR_HELPJ (Q9ZJM4), NNR_HELPY (P56176), NNR_HYPBU (A2BLC0), NNR_KORCO (B1L3W1), NNR_LEIBR (A4H7T9), NNR_LEIIN (A4HW65), NNR_LEIMA (Q4QFL5), NNR_METHJ (Q2FT57), NNR_METKA (Q8TX67), NNR_METTH (O27324), NNR_MOOTA (Q2RGI2), NNR_PYRAE (Q8ZV04), NNR_SALRD (Q2S580), NNR_THEAS (D1BAA5), NNR_THEPD (A1S0R2), NNR_THEVB (Q8DGC3), NNR_THEYD (B5YIM0), NNR_VIBCH (Q9KMX5)» more |
| PDB [Detailed view] |
33 PDB
1KYH; 2AX3; 2R3B; 2R3E; 3RPH; 3RPZ; 3RQ2; 3RQ5; 3RQ6; 3RQ8; 3RQH; 3RQQ; 3RQX; 3RRB; 3RRE; 3RRF; 3RRJ; 3RS8; 3RS9; 3RSF; 3RSG; 3RSQ; 3RSS; 3RT7; 3RT9; 3RTA; 3RTB; 3RTC; 3RTD; 3RTE; 3RTG; 3RU2; 3RU3 » more |