PROSITE entry PS01050

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General information about the entry

Entry name [info]	YJEF_C_2
Accession [info]	PS01050
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-NOV-1997 DATA UPDATE; 13-SEP-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00806

Name and characterization of the entry

Description [info]	YjeF C-terminal domain signature 2.
Pattern [info]	[GA]-G-x-G-D-[TV]-[LT]-[STA]-G-x-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_04 which contains 570'157 sequence entries.

Total number of hits	51 in 51 different sequences
Number of true positive hits	51 in 51 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	40
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	56.04 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

51 sequences

NNRD_AJECG  (C0NFV9), NNRD_ASPFU  (Q4X1F8), NNRD_BACSU  (P94368),

NNRD_BATDJ  (F4NZ38), NNRD_BORPE  (Q7VU32), NNRD_CAEBR  (A8X354), 
NNRD_CAEEL  (P32740), NNRD_CANAL  (Q59M69), NNRD_CANAW  (C4YSU5), 
NNRD_COPC7  (A8N8Z0), NNRD_EMENI  (Q5B0D6), NNRD_ENTFA  (Q833Y3), 
NNRD_ENTH1  (C4LZV8), NNRD_FLAPJ  (A6GXW4), NNRD_FUSV7  (C7YKN8), 
NNRD_HETP5  (D3BMU4), NNRD_LACLA  (Q9CIU7), NNRD_LACPL  (F9UN92), 
NNRD_LISMO  (Q8Y6R2), NNRD_NEUCR  (Q7SHU9), NNRD_NITMS  (A9A498), 
NNRD_PHANO  (Q0UVK8), NNRD_PHATC  (B7FXE8), NNRD_RHOBA  (Q7UFW7), 
NNRD_STAA8  (Q2G2P8), NNRD_STRR6  (Q8DQD2), NNRD_STRTR  (P96051), 
NNRD_USTMA  (Q4P219), NNRD_YEAST  (P36059), NNR_AQUAE   (O67377), 
NNR_DICTD   (B8E2P6), NNR_ECOLI   (P31806), NNR_GLOVI   (Q7NIE6), 
NNR_HELPJ   (Q9ZJM4), NNR_HELPY   (P56176), NNR_KORCO   (B1L3W1), 
NNR_LEIBR   (A4H7T9), NNR_LEIIN   (A4HW65), NNR_LEIMA   (Q4QFL5), 
NNR_METJA   (Q58981), NNR_METKA   (Q8TX67), NNR_MOOTA   (Q2RGI2), 
NNR_MYCLE   (P37391), NNR_MYCTO   (P9WF10), NNR_MYCTU   (P9WF11), 
NNR_PYRAE   (Q8ZV04), NNR_SYNY3   (P74217), NNR_THEMA   (Q9X024), 
NNR_THEVB   (Q8DGC3), NNR_THEYD   (B5YIM0), NNR_VIBCH   (Q9KMX5)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

40 sequences

NNRD1_PUCGT (E3LAQ9), NNRD2_PUCGT (E3L9T1), NNRD_AEDAE  (Q17NP0),

NNRD_ANODA  (E3XDZ8), NNRD_ARATH  (Q94AF2), NNRD_BOVIN  (E1BNQ4), 
NNRD_CANLF  (E2QUI9), NNRD_CENSY  (A0RU82), NNRD_CIOIN  (F6RCC2), 
NNRD_CRYNJ  (Q5K8L4), NNRD_DANRE  (F1Q575), NNRD_DICDI  (Q54FJ9), 
NNRD_DROME  (Q9VVW8), NNRD_DROPS  (B5DHB2), NNRD_HALTV  (D2RXF6), 
NNRD_HUMAN  (Q8IW45), NNRD_IXOSC  (B7PBI5), NNRD_MACMU  (F7E727), 
NNRD_MOUSE  (Q9CZ42), NNRD_NATMM  (D3SQW0), NNRD_NEIG1  (Q5F8G9), 
NNRD_NEIMB  (Q9JRZ9), NNRD_NEMVE  (A7RRZ8), NNRD_PEDHC  (E0VSF4), 
NNRD_PHYPA  (A9RY03), NNRD_PONAB  (Q5R824), NNRD_RAT(D4AAT7), 
NNRD_SCHPO  (O94347), NNRD_SORBI  (C5Y210), NNRD_VITVI  (F6HDM2), 
NNRD_XANCP  (Q8PBP3), NNR_ARCFU   (O29407), NNR_CORGL   (Q8NSS3), 
NNR_COXBU   (Q83CM5), NNR_HYPBU   (A2BLC0), NNR_METHJ   (Q2FT57), 
NNR_METTH   (O27324), NNR_SALRD   (Q2S580), NNR_THEAS   (D1BAA5), 
NNR_THEPD   (A1S0R2)

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PDB
[Detailed view]

34 PDB

1KYH; 2AX3; 2R3B; 2R3E; 3K5W; 3RPH; 3RPZ; 3RQ2; 3RQ5; 3RQ6; 3RQ8; 3RQH; 3RQQ; 3RQX; 3RRB; 3RRE; 3RRF; 3RRJ; 3RS8; 3RS9; 3RSF; 3RSG; 3RSQ; 3RSS; 3RT7; 3RT9; 3RTA; 3RTB; 3RTC; 3RTD; 3RTE; 3RTG; 3RU2; 3RU3
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