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Entry: PS01066

General information about the entry

Entry name [info] UPP_SYNTHASE
Accession [info] PS01066
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE;
22-APR-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00817

Name and characterization of the entry

Description [info] Undecaprenyl pyrophosphate synthase family signature.
Pattern [info] 
[DEH]-[LIVMF]-[LIVMFC]-[LIVMF]-R-[STPV]-[SGAC]-[GEN]-x(1,2)-R-x-S-x-[FY]-
[LMFV]-[LIPMVT]-[YWL].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_02 which contains 562'253 sequence entries.


Total number of hits 214 in 214 different sequences
Number of true positive hits 214 in 214 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 4
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.17 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 214 sequences 

CRIT_STRCO  (Q9ACU1    ), DDPS1_ARATH (O80458    ), DDPS2_ARATH (Q56Y11    ), 

DDPS3_ARATH (Q8RX73    ), DDPS4_ARATH (Q8GY03    ), DDPS5_ARATH (Q570Q8    ), 
DDPS6_ARATH (Q8S2T1    ), DDPS7_ARATH (Q8LED0    ), DDPS8_ARATH (Q8LAR7    ), 
DHDDS_HUMAN (Q86SQ9    ), DHDDS_MOUSE (Q99KU1    ), DPDP_THEFY  (Q47RM6    ), 
DPDS_MYCBO  (P60478    ), DPDS_MYCLE  (P38119    ), DPDS_MYCS2  (A0R0S4    ), 
DPDS_MYCTO  (P9WFF6    ), DPDS_MYCTU  (P9WFF7    ), HRT2_HEVBR  (Q8W3U4    ), 
ISPT1_BRADU (Q89W41    ), ISPT1_CORDI (P60480    ), ISPT1_COREF (Q8FQR4    ), 
ISPT1_CORGL (P38118    ), ISPT1_NOSS1 (P58563    ), ISPT1_STRAW (Q82IC1    ), 
ISPT1_STRCO (Q9L2H4    ), ISPT1_TROW8 (Q83HR7    ), ISPT1_TROWT (Q83GJ0    ), 
ISPT2_BRADU (Q89KP7    ), ISPT2_CORDI (P60481    ), ISPT2_COREF (Q8FNG2    ), 
ISPT2_CORGL (Q8NNC1    ), ISPT2_NOSS1 (Q8YRL4    ), ISPT2_STRAW (Q82BS5    ), 
ISPT2_STRCO (Q9XA06    ), ISPT2_TROW8 (Q83HN8    ), ISPT2_TROWT (Q83GG2    ), 
ISPT_AGRFC  (Q8UFL9    ), ISPT_AQUAE  (O67291    ), ISPT_AQUPY  (Q8GLK9    ), 
ISPT_BACAN  (Q81WL2    ), ISPT_BACC1  (Q732P6    ), ISPT_BACCR  (Q819Y1    ), 
ISPT_BACHD  (Q9KA67    ), ISPT_BACHK  (Q6HEZ2    ), ISPT_BACSK  (Q5WFT2    ), 
ISPT_BACSU  (O31751    ), ISPT_BACTN  (Q8A1E0    ), ISPT_BIFLO  (Q8G7Y3    ), 
ISPT_BORBR  (Q7WJ90    ), ISPT_BORBU  (O51146    ), ISPT_BORPA  (Q7WA56    ), 
ISPT_BORPE  (Q7VYC6    ), ISPT_BRUAB  (Q57CY1    ), ISPT_BRUME  (Q8YHH3    ), 
ISPT_BRUSU  (Q8G0D9    ), ISPT_CALS4  (Q8RA26    ), ISPT_CAMJE  (Q9PP99    ), 
ISPT_CAMJR  (Q5HUX2    ), ISPT_CAUVC  (Q9A707    ), ISPT_CHLAB  (Q5L6U0    ), 
ISPT_CHLCV  (Q824H0    ), ISPT_CHLMU  (Q9PJU2    ), ISPT_CHLPN  (Q9Z7Y7    ), 
ISPT_CHLTE  (Q8KFQ5    ), ISPT_CHLTR  (O84456    ), ISPT_CHRVO  (Q7NVZ0    ), 
ISPT_CLOAB  (Q97I62    ), ISPT_CLOPE  (Q8XJQ9    ), ISPT_CLOTE  (Q895K8    ), 
ISPT_DEIRA  (Q9RRP1    ), ISPT_ENTFA  (Q831K9    ), ISPT_FUSNN  (Q8RE08    ), 
ISPT_GEOKA  (Q5L0J8    ), ISPT_GEOSL  (P60482    ), ISPT_GLOVI  (Q7NPE7    ), 
ISPT_HELHP  (Q7VH74    ), ISPT_HELMO  (Q8GDY3    ), ISPT_HELPJ  (Q9ZK05    ), 
ISPT_HELPY  (P55984    ), ISPT_LACAC  (Q5FJM7    ), ISPT_LACJO  (Q74IR9    ), 
ISPT_LACLA  (Q9CDT1    ), ISPT_LEPIC  (Q72U10    ), ISPT_LEPIN  (Q8F144    ), 
ISPT_LISIN  (Q92C39    ), ISPT_LISMF  (Q720A7    ), ISPT_LISMO  (Q8Y7G6    ), 
ISPT_MYCPF  (Q93AU4    ), ISPT_NEIG1  (Q5F5X2    ), ISPT_NEIMA  (Q9JX35    ), 
ISPT_NEIMB  (Q9K1G6    ), ISPT_NITEU  (Q82TZ9    ), ISPT_OCEIH  (Q8EQU9    ), 
ISPT_PORGI  (Q7MXJ4    ), ISPT_PROMA  (Q7VBI9    ), ISPT_PROMM  (Q7V6T7    ), 
ISPT_PROMP  (Q7V102    ), ISPT_RALSO  (Q8XZI7    ), ISPT_RHILO  (Q98MB9    ), 
ISPT_RHIME  (Q92Q51    ), ISPT_RHOBA  (Q7UF53    ), ISPT_RICBR  (Q1RII8    ), 
ISPT_RICCN  (Q92I30    ), ISPT_RICFE  (Q4ULR6    ), ISPT_RICPR  (Q9ZDA7    ), 
ISPT_RICS2  (Q7PBU9    ), ISPT_RICTY  (Q68WV4    ), ISPT_STAAC  (Q5HGH1    ), 
ISPT_STAAM  (P60476    ), ISPT_STAAN  (P60477    ), ISPT_STAAR  (Q6GHH5    ), 
ISPT_STAAS  (Q6G9V3    ), ISPT_STAAW  (Q8NWZ5    ), ISPT_STAEQ  (Q5HPT1    ), 
ISPT_STAES  (Q8CPG7    ), ISPT_STAHJ  (Q4L5W2    ), ISPT_STAS1  (Q49X45    ), 
ISPT_STRA3  (Q8E359    ), ISPT_STRA5  (Q8DXD5    ), ISPT_STRFR  (P20182    ), 
ISPT_STRMU  (Q8DSJ7    ), ISPT_STRP1  (Q99XY1    ), ISPT_STRP3  (P0DH32    ), 
ISPT_STRP6  (Q5X9U4    ), ISPT_STRP8  (Q8NZB2    ), ISPT_STRPN  (Q97SR4    ), 
ISPT_STRPQ  (P0DH33    ), ISPT_STRR6  (Q8DRB3    ), ISPT_STRT1  (Q5M1N6    ), 
ISPT_STRT2  (Q5M677    ), ISPT_SYNPX  (Q7U7P7    ), ISPT_SYNY3  (Q55482    ), 
ISPT_THEEB  (Q8DI29    ), ISPT_THEMA  (Q9X1B8    ), ISPT_THET2  (O87197    ), 
ISPT_THET8  (Q5SH15    ), ISPT_TREDE  (Q73K76    ), ISPT_TREPA  (O83612    ), 
ISPT_TRIV2  (Q9ZEJ7    ), ISPT_WOLSU  (Q7M7V7    ), ISPT_ZYMMO  (Q9X5F1    ), 
NDPS_SOLLC  (C1K5M2    ), RER2_YEAST  (P35196    ), SRT1_YEAST  (Q03175    ), 
UPPS_ACIAD  (Q6FCH1    ), UPPS_AERPE  (Q9YC66    ), UPPS_ALIF1  (Q5E3E3    ), 
UPPS_ARCFU  (O29049    ), UPPS_BLOFL  (Q7VRE1    ), UPPS_BUCAI  (P57330    ), 
UPPS_BUCAP  (Q8K9S6    ), UPPS_BUCBP  (Q89AP0    ), UPPS_COXBU  (Q83BV5    ), 
UPPS_ECO57  (P60474    ), UPPS_ECOL6  (P60473    ), UPPS_ECOLI  (P60472    ), 
UPPS_FRATT  (Q5NHX6    ), UPPS_HAEDU  (Q7VM20    ), UPPS_HAEIN  (P44938    ), 
UPPS_HALMA  (Q5V1I1    ), UPPS_HALSA  (Q9HP68    ), UPPS_LACPL  (Q88VJ8    ), 
UPPS_LEGPA  (Q5X7N9    ), UPPS_LEGPH  (Q5ZY69    ), UPPS_LEGPL  (Q5WZ40    ), 
UPPS_METAC  (Q8TJQ7    ), UPPS_METJA  (Q58767    ), UPPS_METKA  (Q8TXA7    ), 
UPPS_METMA  (Q8PZ76    ), UPPS_METTH  (O26334    ), UPPS_MICLU  (O82827    ), 
UPPS_PASMU  (Q9CJL4    ), UPPS_PECAS  (Q6D8D8    ), UPPS_PHOLL  (Q7N8P2    ), 
UPPS_PHOPR  (Q6LN28    ), UPPS_PICTO  (Q6KZ89    ), UPPS_PSEAE  (Q9HXY2    ), 
UPPS_PSEPK  (Q88MH6    ), UPPS_PSESM  (Q886N9    ), UPPS_PYRAB  (Q9V157    ), 
UPPS_PYRAE  (Q8ZU54    ), UPPS_PYRFU  (Q8U0I8    ), UPPS_PYRHO  (O59258    ), 
UPPS_SACS2  (Q980W4    ), UPPS_SALPA  (Q5PD68    ), UPPS_SALTI  (Q8Z9A5    ), 
UPPS_SALTY  (Q8ZRP2    ), UPPS_SHEON  (Q8EGH1    ), UPPS_SHIFL  (P60475    ), 
UPPS_SULAC  (Q9HH76    ), UPPS_SULTO  (Q976K2    ), UPPS_THEAC  (Q9HKQ0    ), 
UPPS_THEKO  (Q5JGE1    ), UPPS_THEVO  (Q97B58    ), UPPS_VIBCH  (Q9KPV6    ), 
UPPS_VIBPA  (Q87ME1    ), UPPS_VIBVU  (Q8DBF7    ), UPPS_VIBVY  (Q7MIG4    ), 
UPPS_WIGBR  (Q8D2G7    ), UPPS_XANAC  (Q8PMK9    ), UPPS_XANCP  (Q8PAV7    ), 
UPPS_XANOR  (Q5H1E5    ), UPPS_XYLFA  (Q9PEH8    ), UPPS_XYLFT  (Q87EH7    ), 
UPPS_YERPE  (Q8ZH61    ), UPPS_YERPS  (Q667J4    ), YE54_SCHPO  (O14171    ), 
ZFPP_MYCBO  (Q7U0P8    ), ZFPP_MYCLE  (Q9CB36    ), ZFPP_MYCS2  (A0R2W4    ), 
ZFPP_MYCTO  (P9WFF4    ), ZFPP_MYCTU  (P9WFF5    ), ZFPP_THEFY  (Q47SS3    ), 
ZFPS_SOLHA  (B8XA40    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 4 sequences 

NGBR_DANRE  (Q6DHR8    ), NGBR_HUMAN  (Q96E22    ), NGBR_MOUSE  (Q99LJ8    ), 

RER2_ENCCU  (Q8SQJ8    )
» more

PDB
[Detailed view]		 52 PDB

1F75; 1JP3; 1UEH; 1V7U; 1X06; 1X07; 1X08; 1X09; 2D2R; 2DTN; 2E98; 2E99; 2E9A; 2E9C; 2E9D; 2VFW; 2VG0; 2VG1; 2VG2; 2VG3; 2VG4; 3QAS; 3SGT; 3SGV; 3SGX; 3SH0; 3TH8; 3UGS; 3WYJ; 4H2J; 4H2M; 4H2O; 4H38; 4H3A; 4H3C; 4H8E; 4ONC; 4Q9M; 4Q9O; 4U82; 5CQB; 5CQJ; 5HXN; 5HXO; 5HXP; 5HXQ; 5HXT; 5KH2; 5KH4; 5KH5; 5ZHE; 6IME
» more

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