PROSITE entry PS01066

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	UPP_SYNTHASE
Accession [info]	PS01066
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-DEC-2004 DATA UPDATE; 13-SEP-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00817

Name and characterization of the entry

Description [info]	Undecaprenyl pyrophosphate synthase family signature.
Pattern [info]	[DEH]-[LIVMF]-[LIVMFC]-[LIVMF]-R-[STPV]-[SGAC]-[GEN]-x(1,2)-R-x-S-x-[FY]- [LMFV]-[LIPMVT]-[YWL].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_04 which contains 570'157 sequence entries.

Total number of hits	220 in 220 different sequences
Number of true positive hits	220 in 220 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	4
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	98.21 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

220 sequences

CPT1_SOLLC  (C1K5M2), CPT2_SOLLC  (K7WQ45), CPT3_SOLLC  (K7WCI9),

CPT4_SOLLC  (K4D3U9), CPT5_SOLLC  (K7X479), CPT6_SOLLC  (K7W9N9), 
CPT7_SOLLC  (K4CA50), CRIT_STRCO  (Q9ACU1), DDPS1_ARATH (O80458), 
DDPS2_ARATH (Q56Y11), DDPS3_ARATH (Q8RX73), DDPS4_ARATH (Q8GY03), 
DDPS5_ARATH (Q570Q8), DDPS6_ARATH (Q8S2T1), DDPS7_ARATH (Q8LED0), 
DDPS8_ARATH (Q8LAR7), DHDDS_HUMAN (Q86SQ9), DHDDS_MOUSE (Q99KU1), 
DPDP_THEFY  (Q47RM6), DPDS_MYCBO  (P60478), DPDS_MYCLE  (P38119), 
DPDS_MYCS2  (A0R0S4), DPDS_MYCTO  (P9WFF6), DPDS_MYCTU  (P9WFF7), 
HRT2_HEVBR  (Q8W3U4), ISPT1_BRADU (Q89W41), ISPT1_CORDI (P60480), 
ISPT1_COREF (Q8FQR4), ISPT1_CORGL (P38118), ISPT1_NOSS1 (P58563), 
ISPT1_STRAW (Q82IC1), ISPT1_STRCO (Q9L2H4), ISPT1_TROW8 (Q83HR7), 
ISPT1_TROWT (Q83GJ0), ISPT2_BRADU (Q89KP7), ISPT2_CORDI (P60481), 
ISPT2_COREF (Q8FNG2), ISPT2_CORGL (Q8NNC1), ISPT2_NOSS1 (Q8YRL4), 
ISPT2_STRAW (Q82BS5), ISPT2_STRCO (Q9XA06), ISPT2_TROW8 (Q83HN8), 
ISPT2_TROWT (Q83GG2), ISPT_AGRFC  (Q8UFL9), ISPT_ALKCK  (Q5WFT2), 
ISPT_AQUAE  (O67291), ISPT_AQUPY  (Q8GLK9), ISPT_BACAN  (Q81WL2), 
ISPT_BACC1  (Q732P6), ISPT_BACCR  (Q819Y1), ISPT_BACHK  (Q6HEZ2), 
ISPT_BACSU  (O31751), ISPT_BACTN  (Q8A1E0), ISPT_BIFLO  (Q8G7Y3), 
ISPT_BORBR  (Q7WJ90), ISPT_BORBU  (O51146), ISPT_BORPA  (Q7WA56), 
ISPT_BORPE  (Q7VYC6), ISPT_BRUAB  (Q57CY1), ISPT_BRUME  (Q8YHH3), 
ISPT_BRUSU  (Q8G0D9), ISPT_CALS4  (Q8RA26), ISPT_CAMJE  (Q9PP99), 
ISPT_CAMJR  (Q5HUX2), ISPT_CAUVC  (Q9A707), ISPT_CHLAB  (Q5L6U0), 
ISPT_CHLCV  (Q824H0), ISPT_CHLMU  (Q9PJU2), ISPT_CHLPN  (Q9Z7Y7), 
ISPT_CHLTE  (Q8KFQ5), ISPT_CHLTR  (O84456), ISPT_CHRVO  (Q7NVZ0), 
ISPT_CLOAB  (Q97I62), ISPT_CLOPE  (Q8XJQ9), ISPT_CLOTE  (Q895K8), 
ISPT_DEIRA  (Q9RRP1), ISPT_ENTFA  (Q831K9), ISPT_FUSNN  (Q8RE08), 
ISPT_GEOKA  (Q5L0J8), ISPT_GEOSL  (P60482), ISPT_GLOVI  (Q7NPE7), 
ISPT_HALH5  (Q9KA67), ISPT_HELHP  (Q7VH74), ISPT_HELMO  (Q8GDY3), 
ISPT_HELPJ  (Q9ZK05), ISPT_HELPY  (P55984), ISPT_LACAC  (Q5FJM7), 
ISPT_LACJO  (Q74IR9), ISPT_LACLA  (Q9CDT1), ISPT_LEPIC  (Q72U10), 
ISPT_LEPIN  (Q8F144), ISPT_LISIN  (Q92C39), ISPT_LISMF  (Q720A7), 
ISPT_LISMO  (Q8Y7G6), ISPT_MYCPF  (Q93AU4), ISPT_NEIG1  (Q5F5X2), 
ISPT_NEIMA  (Q9JX35), ISPT_NEIMB  (Q9K1G6), ISPT_NITEU  (Q82TZ9), 
ISPT_OCEIH  (Q8EQU9), ISPT_PARMW  (Q7U7P7), ISPT_PORGI  (Q7MXJ4), 
ISPT_PROMA  (Q7VBI9), ISPT_PROMM  (Q7V6T7), ISPT_PROMP  (Q7V102), 
ISPT_RALN1  (Q8XZI7), ISPT_RHILO  (Q98MB9), ISPT_RHIME  (Q92Q51), 
ISPT_RHOBA  (Q7UF53), ISPT_RICBR  (Q1RII8), ISPT_RICCN  (Q92I30), 
ISPT_RICFE  (Q4ULR6), ISPT_RICPR  (Q9ZDA7), ISPT_RICS2  (Q7PBU9), 
ISPT_RICTY  (Q68WV4), ISPT_STAAC  (Q5HGH1), ISPT_STAAM  (P60476), 
ISPT_STAAN  (P60477), ISPT_STAAR  (Q6GHH5), ISPT_STAAS  (Q6G9V3), 
ISPT_STAAW  (Q8NWZ5), ISPT_STAEQ  (Q5HPT1), ISPT_STAES  (Q8CPG7), 
ISPT_STAHJ  (Q4L5W2), ISPT_STAS1  (Q49X45), ISPT_STRA3  (Q8E359), 
ISPT_STRA5  (Q8DXD5), ISPT_STRFR  (P20182), ISPT_STRMU  (Q8DSJ7), 
ISPT_STRP1  (Q99XY1), ISPT_STRP3  (P0DH32), ISPT_STRP6  (Q5X9U4), 
ISPT_STRP8  (Q8NZB2), ISPT_STRPN  (Q97SR4), ISPT_STRPQ  (P0DH33), 
ISPT_STRR6  (Q8DRB3), ISPT_STRT1  (Q5M1N6), ISPT_STRT2  (Q5M677), 
ISPT_SYNY3  (Q55482), ISPT_THEMA  (Q9X1B8), ISPT_THET2  (O87197), 
ISPT_THET8  (Q5SH15), ISPT_THEVB  (Q8DI29), ISPT_TREDE  (Q73K76), 
ISPT_TREPA  (O83612), ISPT_TRIV2  (Q9ZEJ7), ISPT_WOLSU  (Q7M7V7), 
ISPT_ZYMMO  (Q9X5F1), RER2_YEAST  (P35196), SRT1_YEAST  (Q03175), 
UPPS_ACIAD  (Q6FCH1), UPPS_AERPE  (Q9YC66), UPPS_ALIF1  (Q5E3E3), 
UPPS_ARCFU  (O29049), UPPS_BLOFL  (Q7VRE1), UPPS_BUCAI  (P57330), 
UPPS_BUCAP  (Q8K9S6), UPPS_BUCBP  (Q89AP0), UPPS_COXBU  (Q83BV5), 
UPPS_ECO57  (P60474), UPPS_ECOL6  (P60473), UPPS_ECOLI  (P60472), 
UPPS_FRATT  (Q5NHX6), UPPS_HAEDU  (Q7VM20), UPPS_HAEIN  (P44938), 
UPPS_HALMA  (Q5V1I1), UPPS_HALSA  (Q9HP68), UPPS_LACPL  (Q88VJ8), 
UPPS_LEGPA  (Q5X7N9), UPPS_LEGPH  (Q5ZY69), UPPS_LEGPL  (Q5WZ40), 
UPPS_METAC  (Q8TJQ7), UPPS_METJA  (Q58767), UPPS_METKA  (Q8TXA7), 
UPPS_METMA  (Q8PZ76), UPPS_METTH  (O26334), UPPS_MICLU  (O82827), 
UPPS_PASMU  (Q9CJL4), UPPS_PECAS  (Q6D8D8), UPPS_PHOLL  (Q7N8P2), 
UPPS_PHOPR  (Q6LN28), UPPS_PICTO  (Q6KZ89), UPPS_PSEAE  (Q9HXY2), 
UPPS_PSEPK  (Q88MH6), UPPS_PSESM  (Q886N9), UPPS_PYRAB  (Q9V157), 
UPPS_PYRAE  (Q8ZU54), UPPS_PYRFU  (Q8U0I8), UPPS_PYRHO  (O59258), 
UPPS_SACS2  (Q980W4), UPPS_SALPA  (Q5PD68), UPPS_SALTI  (Q8Z9A5), 
UPPS_SALTY  (Q8ZRP2), UPPS_SHEON  (Q8EGH1), UPPS_SHIFL  (P60475), 
UPPS_SULAC  (Q9HH76), UPPS_SULTO  (Q976K2), UPPS_THEAC  (Q9HKQ0), 
UPPS_THEKO  (Q5JGE1), UPPS_THEVO  (Q97B58), UPPS_VIBCH  (Q9KPV6), 
UPPS_VIBPA  (Q87ME1), UPPS_VIBVU  (Q8DBF7), UPPS_VIBVY  (Q7MIG4), 
UPPS_WIGBR  (Q8D2G7), UPPS_XANAC  (Q8PMK9), UPPS_XANCP  (Q8PAV7), 
UPPS_XANOR  (Q5H1E5), UPPS_XYLFA  (Q9PEH8), UPPS_XYLFT  (Q87EH7), 
UPPS_YERPE  (Q8ZH61), UPPS_YERPS  (Q667J4), YE54_SCHPO  (O14171), 
ZFPP_MYCBO  (Q7U0P8), ZFPP_MYCLE  (Q9CB36), ZFPP_MYCS2  (A0R2W4), 
ZFPP_MYCTO  (P9WFF4), ZFPP_MYCTU  (P9WFF5), ZFPP_THEFY  (Q47SS3), 
ZFPS_SOLHA  (B8XA40)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

4 sequences

NGBR_DANRE  (Q6DHR8), NGBR_HUMAN  (Q96E22), NGBR_MOUSE  (Q99LJ8),

RER2_ENCCU  (Q8SQJ8)

» more

PDB
[Detailed view]

66 PDB

1F75; 1JP3; 1UEH; 1V7U; 1X06; 1X07; 1X08; 1X09; 2D2R; 2DTN; 2E98; 2E99; 2E9A; 2E9C; 2E9D; 2VFW; 2VG0; 2VG1; 2VG2; 2VG3; 2VG4; 3QAS; 3SGT; 3SGV; 3SGX; 3SH0; 3TH8; 3UGS; 3WYJ; 4H2J; 4H2M; 4H2O; 4H38; 4H3A; 4H3C; 4H8E; 4ONC; 4Q9M; 4Q9O; 4U82; 5CQB; 5CQJ; 5HXN; 5HXO; 5HXP; 5HXQ; 5HXT; 5KH2; 5KH4; 5KH5; 5ZHE; 6IME; 6LOI; 6W2L; 6Z1N; 7CPM; 7CPN; 7JLI; 7JLJ; 7JLM; 7JLR; 7PAX; 7PAY; 7PB0; 7PB1; 7VPC
» more