PROSITE entry PS01067
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General information about the entry
| Entry name [info] | SECE_SEC61G |
| Accession [info] | PS01067 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00818 |
Name and characterization of the entry
| Description [info] | Protein secE/sec61-gamma signature. |
| Pattern [info] |
[LIVMFY]-x-{D}-[DENQGA]-x-{E}-x(2)-[LIVMFTA]-x-[KRV]-x(2)-[KW]-P-x(3)-
[SEQ]-x(5)-{D}-{CG}-[LIVT]-[LIVGA]-[LIVFGAST].
|
Numerical results [info]
| Total number of hits | 81 in 81 different sequences |
| Number of true positive hits | 73 in 73 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 8 in 8 different sequences |
| Number of false negative sequences | 29 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 90.12 % |
| Recall (true positives / (true positives + false negatives)) | 71.57 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
73 sequences
EMO1_CAEEL (Q19967), S61G1_ARATH (P0DI74), S61G1_DROME (Q9V668), S61G1_GRYOR (Q7Z1B8), S61G2_ARATH (P0DI75), S61G2_DROME (Q9VWE9), SC61G_BOVIN (Q3T104), SC61G_BRABE (Q962X7), SC61G_CANLF (P60058), SC61G_CIOIN (Q8I7D9), SC61G_DICDI (Q54JV6), SC61G_GADMO (Q7SZU9), SC61G_HARAN (Q7T207), SC61G_HUMAN (P60059), SC61G_MOUSE (P60060), SC61G_NEUCR (Q9C2D4), SC61G_ORYSJ (P38385), SC61G_SCHPO (Q09827), SC61G_XENLA (Q66KU2), SC61G_YEAST (P35179), SECE_BACLI (P38381), SECE_BACSU (Q06799), SECE_BUCAP (Q8KA64), SECE_ECO57 (P0AG98), SECE_ECOL6 (P0AG97), SECE_ECOLI (P0AG96), SECE_HAEIN (P43805), SECE_HALH5 (Q9KGE8), SECE_METTH (O27713), SECE_MYCBO (P0A5Z1), SECE_MYCLE (Q9CBJ9), SECE_MYCTO (P9WGN6), SECE_MYCTU (P9WGN7), SECE_PSEAE (Q9HWC3), SECE_PYRAB (Q9V2S1), SECE_PYRHO (P58199), SECE_RICBE (Q8KTA9), SECE_RICBR (Q1RHC4), SECE_RICCN (Q92J92), SECE_RICFE (Q4UKC8), SECE_RICMO (Q8KTB5), SECE_RICPA (Q7WWR6), SECE_RICPR (P50054), SECE_RICRH (Q8KHU8), SECE_RICRI (Q8KTC0), SECE_RICS2 (Q7B6T4), SECE_RICTY (Q68XN4), SECE_SALTI (P0A2D4), SECE_SALTY (P0A2D3), SECE_STAA8 (P0A0I4), SECE_STAAC (Q5HIE0), SECE_STAAM (P0A0I1), SECE_STAAN (P0A0I2), SECE_STAAR (Q6GJD3), SECE_STAAS (Q6GBV2), SECE_STAAW (P0A0I3), SECE_STACT (P36253), SECE_STAEQ (Q5HRL7), SECE_STAES (Q8CQ86), SECE_STRCO (P0A4G8), SECE_STRGB (P52853), SECE_STRGR (P36690), SECE_STRLI (P0A4G9), SECE_STRVG (P36691), SECE_SULAC (P27340), SECE_SYNY3 (P38382), SECE_THEKO (Q5JH32), SECE_THEMA (P35874), SECE_THEON (B6YSX5), SECE_THET8 (P38383), SECE_TREPA (O83263), SECE_VIBAL (Q9ZNE7), SECE_VIBCH (Q9KV36)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
29 sequences
S61G3_ARATH (Q9SMP2), SC61G_ENCCU (Q8SRW9), SECE_ACIAM (Q46493), SECE_AERPE (P58198), SECE_AQUAE (D0VWU4), SECE_ARCFU (O29714), SECE_BORBU (O51356), SECE_BUCAI (P57152), SECE_BUCBP (Q89B14), SECE_HALLT (B9LV21), SECE_HALMA (Q5V456), SECE_HALMT (Q9V2S5), SECE_HALS3 (B0R382), SECE_HALSA (Q9HS72), SECE_HALWD (Q18KS3), SECE_METAC (Q8TI84), SECE_METBF (Q46EU5), SECE_METBU (Q12UQ2), SECE_METJA (Q57817), SECE_METKA (Q8TX54), SECE_METMA (Q8PY55), SECE_METMP (Q6LXB7), SECE_METS3 (A5UKV2), SECE_METS5 (A4YH85), SECE_METST (Q2NEV8), SECE_NATPD (Q3ITN6), SECE_PYRFU (Q8TZK2), SECE_SACS2 (P58191), SECE_SULTO (Q971I8)» more |
| UniProtKB/Swiss-Prot False positive sequences |
8 sequences
ALEX_HUMAN (P84996), DBP3_EREGS (Q755A5), FLUC2_BACLD (Q65LX3), GLNE_MANSM (Q65T25), LLPB_NOTEU (Q8SQ30), MMR1_YEAST (Q06324), PSP24_XENLA (P79945), RLMM_CHRSD (Q1QUU9)» more |
| PDB [Detailed view] |
58 PDB
2AKH; 2AKI; 2WW9; 2WWA; 2WWB; 2ZJS; 2ZQP; 3DIN; 3JC2; 4CG5; 4CG6; 4CG7; 4V6M; 5A6U; 5AWW; 5CH4; 5GAE; 5MG3; 5NCO; 6FTG; 6FTI; 6FTJ; 6N3Q; 6ND1; 6R7L; 6R7Q; 6W6L; 6Z3T; 7AFT; 7KAH; 7KAI; 7KAJ; 7KAO; 7KAP; 7KAQ; 7KAR; 7KAS; 7KAT; 7KAU; 7KB5; 7TM3; 7TUT; 8B6L; 8BTK; 8DNV; 8DNW; 8DNX; 8DNY; 8DNZ; 8DO0; 8DO1; 8DO2; 8DO3; 8OJ0; 8OJ8; 8RJB; 8RJC; 8RJD » more |