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Entry: PS01090

General information about the entry

Entry name [info] TATD_2
Accession [info] PS01090
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-NOV-1995 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00836

Name and characterization of the entry

Description [info] TatD deoxyribonuclease family signature 2.
Pattern [info] 
P-[LIVM]-x-[LIVM]-H-x-R-x-[TA]-x-[DE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 26 in 26 different sequences
Number of true positive hits 22 in 22 different sequences
Number of 'unknown' hits 0
Number of false positive hits 4 in 4 different sequences
Number of false negative sequences 37
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 84.62 %
Recall (true positives / (true positives + false negatives)) 37.29 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 22 sequences 

TATD2_HUMAN (Q93075    ), TATD_ECOLI  (P27859    ), TATD_ENT38  (A4WFX9    ), 

TATD_ENTLS  (E3G381    ), TATD_ERWAE  (D4ICL5    ), TATD_ERWBE  (D8MKW4    ), 
TATD_ERWT9  (B2VG45    ), TATD_ESCF3  (B7LTZ5    ), TATD_KLEP3  (B5XYH5    ), 
TATD_PANAM  (D4GGR2    ), TATD_PANSA  (E6WHK1    ), TATD_RAHSY  (E8XYF5    ), 
TATD_SALTY  (Q9L6M2    ), TATD_SHIF8  (Q0SZ31    ), TATD_YERPY  (B1JP69    ), 
Y017_UREPA  (Q9PRC8    ), Y081_HAEIN  (P44500    ), Y355_BUCAI  (P57436    ), 
Y454_HAEIN  (P44718    ), YABD_BACSU  (P37545    ), YBF5_YEAST  (P34220    ), 
YJJV_ECOLI  (P39408    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 37 sequences 

DTD3_SYNY3  (P73335    ), TAT3A_XENLA (Q05AV0    ), TATD1_BOVIN (Q148G4    ), 

TATD1_DANRE (Q6GML7    ), TATD1_ENCCU (Q8SW70    ), TATD1_ENTBH (B7XJI2    ), 
TATD1_HUMAN (Q6P1N9    ), TATD1_MOUSE (Q6P8M1    ), TATD1_NOSCE (C4VAS3    ), 
TATD3_BOVIN (A1A4M4    ), TATD3_DANRE (Q503T5    ), TATD3_HUMAN (Q17R31    ), 
TATD3_MOUSE (Q3U1C6    ), TATD_CITK8  (A8ACY8    ), TATD_CITRI  (D2TUZ4    ), 
TATD_CROS8  (A7MQN1    ), TATD_CROTZ  (C9XTA5    ), TATD_DICD3  (E0SLH6    ), 
TATD_DICP7  (C6C4V4    ), TATD_EDWTE  (D0Z9R0    ), TATD_MYCTU  (O08343    ), 
TATD_PANVC  (E1SKR8    ), TATD_PECAS  (Q6DAQ1    ), TATD_PECCP  (C6DI71    ), 
TATD_PECPW  (D0KC77    ), TATD_SERP5  (A8G8C4    ), Y009_MYCGE  (P47255    ), 
Y009_MYCPN  (P78005    ), Y1582_METJA (Q58977    ), Y1664_HAEIN (P45305    ), 
Y325_BUCBP  (Q89AG7    ), Y343_BUCAP  (Q8K9J1    ), Y761_METJA  (Q58171    ), 
YCFH_ECO57  (P0AFQ9    ), YCFH_ECOL6  (P0AFQ8    ), YCFH_ECOLI  (P0AFQ7    ), 
YNF8_SCHPO  (Q9UUF1    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

YMES_GEOSE  (P23918    )


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			4 sequences
			


			
CL074_HUMAN (Q32Q52    ), GLGE_CORGL  (Q8NR39    ), TOF1_EMENI  (Q5AXH3    ), 

			
TOF1_PHANO  (Q0UJF3    )


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			4 PDB
			


			1XWY; 1ZZM; 4P5U; 4PE8
				
	





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