PROSITE entry PS01094

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General information about the entry

Entry name [info]	UPF0076
Accession [info]	PS01094
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-JUL-1999 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00838

Name and characterization of the entry

Description [info]	Uncharacterized protein family UPF0076 signature.
Pattern [info]	[PA]-[ASTPV]-R-[SACVF]-x-[LIVMFY]-x(2)-[GSAKR]-x-[LMVA]-x(5,8)-[LIVM]- E-[MI].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	105 in 105 different sequences
Number of true positive hits	85 in 85 different sequences
Number of 'unknown' hits	0
Number of false positive hits	20 in 20 different sequences
Number of false negative sequences	27
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	80.95 %
Recall (true positives / (true positives + false negatives))	75.89 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	85 sequences ALDR_LACLA (O34133), DFRA_MYXXA (O52178), HMF1_YEAST (P40037), MMF1_SCHPO (O43003), MMF1_YEAST (P40185), RIDA_ARATH (Q94JQ4), RIDA_BACSU (P37552), RIDA_BOVIN (Q3T114), RIDA_CAPHI (P80601), RIDA_DERFA (A0A1J1DL12), RIDA_ECOL6 (P0AF94), RIDA_ECOLI (P0AF93), RIDA_HUMAN (P52758), RIDA_MOUSE (P52760), RIDA_PYRFU (Q8U308), RIDA_RAT(P52759), RIDA_SALTY (Q7CP78), RIDA_SHIFL (P0AF95), RUTC_CROS8 (A7ME54), RUTC_CROTZ (C9Y0S5), RUTC_ECO10 (C8U5H2), RUTC_ECO1A (C8UMM6), RUTC_ECO24 (A7ZKB5), RUTC_ECO26 (C8TNC0), RUTC_ECO27 (B7UNZ3), RUTC_ECO44 (D3H123), RUTC_ECO45 (B7MIF7), RUTC_ECO55 (B7LFC0), RUTC_ECO57 (Q8XAU5), RUTC_ECO7I (B7NLB6), RUTC_ECO81 (B7MTF3), RUTC_ECO8A (B7M8Z5), RUTC_ECOBD (C6EHJ7), RUTC_ECOBR (C6UFC1), RUTC_ECOBW (C4ZQD8), RUTC_ECOCB (D3QPK3), RUTC_ECOD1 (C9QZ66), RUTC_ECODH (B1X9D1), RUTC_ECOHS (A7ZYW5), RUTC_ECOK1 (A1A9R5), RUTC_ECOKI (D5CZH0), RUTC_ECOL5 (Q0TJ57), RUTC_ECOL6 (P0AFQ6), RUTC_ECOLC (B1IV87), RUTC_ECOLI (P0AFQ5), RUTC_ECOLU (B7N3G6), RUTC_ECOS5 (D2NGI7), RUTC_ECOSE (B6I986), RUTC_ECOSM (B1LIZ5), RUTC_ECOUT (Q1RDK7), RUTC_ENT38 (A4W923), RUTC_ENTCC (D5CE34), RUTC_KLEP3 (B5XXN2), RUTC_KLEP7 (A6T7A0), RUTC_KLEVT (D3RKL2), RUTC_PANAM (D4GEU6), RUTC_SHIDS (Q32HQ1), RUTC_SHIF2 (D2AC41), RUTC_SHIF8 (Q0T624), RUTC_SHIFL (Q83LK7), RUTC_YERE8 (A1JMX4), TDCF_ECOL6 (P0AGL3), TDCF_ECOLI (P0AGL2), TDCF_SHIFL (P0AGL4), UK114_DROME (Q9V3W0), Y1251_PYRAB (Q9UZA3), Y142_LEUMC (P97117), Y1466_PASMU (Q9L6B5), Y1627_HAEIN (P71394), Y3206_SACS2 (Q97U19), Y322_HAEDU (O30825), Y334_BUCBP (Q89AG0), Y364_AQUAE (O66689), Y4SK_SINFN (P55654), Y709_SYNY3 (P52761), Y719_HAEIN (P44839), Y811_SULTO (Q973T6), Y854_PYRHO (O58584), Y944_HELPJ (Q9ZKQ6), Y944_HELPY (O25598), YOAB_ECOL6 (P0AEB8), YOAB_ECOLI (P0AEB7), YOAB_SHIFL (P0AEB9), YSD2_CAEEL (Q10121), YVN1_AZOVI (P40431) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	27 sequences DPH6_SCHPO (Q9USQ7), DPH6_YEAST (Q12429), MMF2_SCHPO (Q9UR06), RUTC_ACIAD (Q6FFZ5), RUTC_AGRFC (Q7CWX2), RUTC_AGRRK (B9JLT7), RUTC_AZOC5 (A8IAD2), RUTC_CAUSK (B0SW61), RUTC_CAUST (D5VGV2), RUTC_CAUVC (Q9A4N4), RUTC_CAUVN (B8H1Q2), RUTC_HALO1 (D0LI57), RUTC_METC4 (B7KWT5), RUTC_METEA (C5B0U7), RUTC_METED (C7CM34), RUTC_METEP (A9W3H9), RUTC_METPB (B1ZB17), RUTC_METRJ (B1M5I6), RUTC_PSE14 (Q48MQ6), RUTC_PSEU2 (Q4ZXR9), RUTC_SERP5 (A8GCT4), RUTC_STUS1 (A4VQH6), RUTC_VARPS (C5CN81), UK114_CHICK (P83145), Y359_BUCAP (Q8K9H7), Y371_BUCAI (P57452), YJGH_ECOLI (P39332) » more
UniProtKB/Swiss-Prot False positive sequences	20 sequences ATPFD_MYCLB (B8ZR39), ATPFD_MYCLE (P53006), CCL_CHLAA (A9WGE2), CYF_PROM1 (A2C0R8), CYF_PROMT (Q46GW2), PB2_I30A0 (P26113), PB2_I61A1 (B3EUR6), PB2_I67A2 (A8C8X3), PB2_I77AC (P26114), POLS_ABPVR (Q9DSN8), SYE_BIFAA (A0ZZS4), SYE_BIFLD (B3DU87), SYE_BIFLO (Q8G709), SYE_CUTAK (Q6A6M1), SYE_FRASN (A8LCV4), SYE_STRAW (Q82JR3), SYE_STRGG (B1VZ06), SYE_THEYD (B5YIG1), TRPE2_HALMA (Q5V213), TRPE_HALVD (P33975) » more
PDB [Detailed view]	17 PDB 1J7H; 1JD1; 1NQ3; 1ONI; 1QAH; 1QD9; 1QU9; 1X25; 2DYY; 2UYJ; 2UYK; 2UYN; 2UYP; 3QUW; 3V4D; 5HP7; 5HP8 » more