PROSITE entry PS01110
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | RNA_POL_H_23KD |
| Accession [info] | PS01110 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00854 |
Name and characterization of the entry
| Description [info] | RNA polymerases H / 23 Kd subunits signature. |
| Pattern [info] |
H-[NQEIVMYD]-[LIVMYAS]-V-P-[EKT]-H-x(2)-[LIVM]-x(2)-[DESAG]-[ET]. |
Numerical results [info]
| Total number of hits | 55 in 55 different sequences |
| Number of true positive hits | 55 in 55 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 8 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 87.30 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
55 sequences
RPAB1_BOVIN (Q2T9T3), RPAB1_CAEBR (A8XGH1), RPAB1_CAEEL (Q9N5K2), RPAB1_CANGA (Q6FQA6), RPAB1_DEBHA (Q6BIJ0), RPAB1_DICDI (Q54EH2), RPAB1_EREGS (Q757H7), RPAB1_HUMAN (P19388), RPAB1_KLULA (Q6CJ62), RPAB1_KLUMA (Q9P4B9), RPAB1_MOUSE (Q80UW8), RPAB1_PONAB (Q5R587), RPAB1_RAT (B0BNE2), RPAB1_SCHPO (Q09191), RPAB1_YARLI (Q6CA26), RPAB1_YEAST (P20434), RPB5A_ARATH (O81098), RPO5_AERPE (Q9YAT3), RPO5_ARCFU (O28394), RPO5_HALS3 (B0R8D7), RPO5_HALSA (P0CX06), RPO5_HYPBU (A2BN32), RPO5_METAC (Q8TRB4), RPO5_METBF (Q464Y4), RPO5_METJA (Q58443), RPO5_METKA (Q8TXI5), RPO5_METM5 (A4FWF9), RPO5_METM6 (A9A9V3), RPO5_METMA (Q8PUQ8), RPO5_METMP (P61519), RPO5_METS5 (A4YCQ7), RPO5_METTH (O27122), RPO5_METTP (A0B555), RPO5_METVS (P41559), RPO5_PYRAB (Q9V116), RPO5_PYRFU (Q8U0M2), RPO5_PYRHO (O74019), RPO5_SACS2 (Q980Q9), RPO5_SACSH (B8YB60), RPO5_SULAC (P11521), RPO5_SULIA (C3MZM6), RPO5_SULIK (C4KIV6), RPO5_SULIL (C3MRK1), RPO5_SULIM (C3MY97), RPO5_SULIN (C3NFS5), RPO5_SULIY (C3N7P8), RPO5_SULTO (Q976A3), RPO5_THEAC (Q03588), RPO5_THECE (P31815), RPO5_THEGJ (C5A210), RPO5_THEKO (Q5JE31), RPO5_THEON (B6YT14), RPO5_THEPD (A1RWW7), RPO5_THESM (C6A1F8), RPO5_THEVO (Q979F2)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
8 sequences
RPO5_META3 (A6UV53), RPO5_METBU (Q12WS3), RPO5_METLZ (A2SSM7), RPO5_METM7 (A6VGU6), RPO5_METST (Q2NEK1), RPO5_NITMS (A9A458), RPO5_PYRAE (Q8ZYR0), RPO5_STAMF (A3DMP2)» more |
| PDB [Detailed view] |
292 PDB
1DZF; 1EIK; 1HMJ; 1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2WAQ; 2WB1; 2Y0S; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4AYB; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4V1M; 4V1N; 4V1O; 4V8S; 4X67; 4X6A; 4Y52; 4Y7N; 4YM7; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 5W5Y; 5W64; 5W65; 5W66; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6CNB; 6CNC; 6CND; 6CNF; 6DRD; 6EU0; 6EU1; 6EU2; 6EU3; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6H67; 6H68; 6HKO; 6HLQ; 6HLR; 6HLS; 6I84; 6KF3; 6KF4; 6KF9; 6O6C; 6O9L; 6RQH; 6RQL; 6RQT; 6RRD; 6RUI; 6RUO; 6RWE; 6TPS; 6TUT; 6UPX; 6UPY; 6UPZ; 6UQ0; 6UQ1; 6UQ2; 6UQ3; 6XRE; 7A6H; 7AE1; 7AE3; 7AEA; 7AOC; 7AOD; 7AOE; 7AST; 7D58; 7D59; 7DN3; 7DU2; 7EU0; 7EU1; 7FJI; 7FJJ; 7KED; 7KEE; 7KEF; 7LBM; 7MEI; 7MK9; 7MKA; 7ML0; 7ML1; 7ML2; 7ML4; 7NKX; 7NKY; 7O4I; 7O4J; 7O72; 7O73; 7O75; 7OB9; 7OBA; 7OBB; 7OK0; 7OQ4; 7OQY; 7RIM; 7RIP; 7RIQ; 7RIW; 7RIX; 7RIY; 7UI9; 7UIF; 7UIO; 7VBA; 7VBB; 7VBC; 7Z0H; 7Z1L; 7Z1M; 7Z1N; 7Z1O; 7Z2Z; 7Z30; 7Z31; 7ZS9; 7ZSA; 7ZSB; 8A43; 8BWS; 8CEN; 8CEO; 8ITY; 8IUE; 8IUH » more |