 |
|
| Entry: PS01110 |
General information about the entry
| Entry name [info] | RNA_POL_H_23KD |
| Accession [info] | PS01110 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE; 07-APR-2021 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00854 |
Name and characterization of the entry
| Description [info] | RNA polymerases H / 23 Kd subunits signature. |
| Pattern [info] |
H-[NQEIVMYD]-[LIVMYAS]-V-P-[EKT]-H-x(2)-[LIVM]-x(2)-[DESAG]-[ET]. |
Numerical results [info]
| Total number of hits | 54 in 54 different sequences |
| Number of true positive hits | 54 in 54 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 8 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 87.10 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
54 sequences
RPAB1_ASHGO (Q757H7 ), RPAB1_BOVIN (Q2T9T3 ), RPAB1_CAEBR (A8XGH1 ), RPAB1_CAEEL (Q9N5K2 ), RPAB1_CANGA (Q6FQA6 ), RPAB1_DEBHA (Q6BIJ0 ), RPAB1_DICDI (Q54EH2 ), RPAB1_HUMAN (P19388 ), RPAB1_KLULA (Q6CJ62 ), RPAB1_KLUMA (Q9P4B9 ), RPAB1_MOUSE (Q80UW8 ), RPAB1_PONAB (Q5R587 ), RPAB1_RAT (B0BNE2 ), RPAB1_SCHPO (Q09191 ), RPAB1_YARLI (Q6CA26 ), RPAB1_YEAST (P20434 ), RPB5A_ARATH (O81098 ), RPOH_AERPE (Q9YAT3 ), RPOH_ARCFU (O28394 ), RPOH_HALS3 (B0R8D7 ), RPOH_HALSA (P0CX06 ), RPOH_HYPBU (A2BN32 ), RPOH_METAC (Q8TRB4 ), RPOH_METBF (Q464Y4 ), RPOH_METJA (Q58443 ), RPOH_METKA (Q8TXI5 ), RPOH_METM5 (A4FWF9 ), RPOH_METM6 (A9A9V3 ), RPOH_METMA (Q8PUQ8 ), RPOH_METMP (P61519 ), RPOH_METS5 (A4YCQ7 ), RPOH_METTH (O27122 ), RPOH_METTP (A0B555 ), RPOH_METVS (P41559 ), RPOH_PYRAB (Q9V116 ), RPOH_PYRFU (Q8U0M2 ), RPOH_PYRHO (O74019 ), RPOH_SACS2 (Q980Q9 ), RPOH_SULAC (P11521 ), RPOH_SULIA (C3MZM6 ), RPOH_SULIK (C4KIV6 ), RPOH_SULIL (C3MRK1 ), RPOH_SULIM (C3MY97 ), RPOH_SULIN (C3NFS5 ), RPOH_SULIY (C3N7P8 ), RPOH_SULTO (Q976A3 ), RPOH_THEAC (Q03588 ), RPOH_THECE (P31815 ), RPOH_THEGJ (C5A210 ), RPOH_THEKO (Q5JE31 ), RPOH_THEON (B6YT14 ), RPOH_THEPD (A1RWW7 ), RPOH_THESM (C6A1F8 ), RPOH_THEVO (Q979F2 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
8 sequences
RPOH_META3 (A6UV53 ), RPOH_METBU (Q12WS3 ), RPOH_METLZ (A2SSM7 ), RPOH_METM7 (A6VGU6 ), RPOH_METST (Q2NEK1 ), RPOH_NITMS (A9A458 ), RPOH_PYRAE (Q8ZYR0 ), RPOH_STAMF (A3DMP2 )» more |
| PDB [Detailed view] |
217 PDB
1DZF; 1EIK; 1HMJ; 1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 4YM7; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 5W5Y; 5W64; 5W65; 5W66; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6CNB; 6CNC; 6CND; 6CNF; 6DRD; 6EU0; 6EU1; 6EU2; 6EU3; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6H67; 6H68; 6HKO; 6HLQ; 6HLR; 6HLS; 6I84; 6KF3; 6KF4; 6KF9; 6O6C; 6O9L; 6RQH; 6RQL; 6RQT; 6RRD; 6RUI; 6RUO; 6RWE; 6TPS; 6TUT; 6UPX; 6UPY; 6UPZ; 6UQ0; 6UQ1; 6UQ2; 6UQ3; 7AST » more |
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission