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PROSITE entry PS01110


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General information about the entry

Entry name [info] RNA_POL_H_23KD
Accession [info] PS01110
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00854

Name and characterization of the entry

Description [info] RNA polymerases H / 23 Kd subunits signature.
Pattern [info]
H-[NQEIVMYD]-[LIVMYAS]-V-P-[EKT]-H-x(2)-[LIVM]-x(2)-[DESAG]-[ET].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.


Total number of hits 55 in 55 different sequences
Number of true positive hits 55 in 55 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 8
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 87.30 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
55 sequences

RPAB1_BOVIN (Q2T9T3), RPAB1_CAEBR (A8XGH1), RPAB1_CAEEL (Q9N5K2), 
RPAB1_CANGA (Q6FQA6), RPAB1_DEBHA (Q6BIJ0), RPAB1_DICDI (Q54EH2), 
RPAB1_EREGS (Q757H7), RPAB1_HUMAN (P19388), RPAB1_KLULA (Q6CJ62), 
RPAB1_KLUMA (Q9P4B9), RPAB1_MOUSE (Q80UW8), RPAB1_PONAB (Q5R587), 
RPAB1_RAT   (B0BNE2), RPAB1_SCHPO (Q09191), RPAB1_YARLI (Q6CA26), 
RPAB1_YEAST (P20434), RPB5A_ARATH (O81098), RPO5_AERPE  (Q9YAT3), 
RPO5_ARCFU  (O28394), RPO5_HALS3  (B0R8D7), RPO5_HALSA  (P0CX06), 
RPO5_HYPBU  (A2BN32), RPO5_METAC  (Q8TRB4), RPO5_METBF  (Q464Y4), 
RPO5_METJA  (Q58443), RPO5_METKA  (Q8TXI5), RPO5_METM5  (A4FWF9), 
RPO5_METM6  (A9A9V3), RPO5_METMA  (Q8PUQ8), RPO5_METMP  (P61519), 
RPO5_METS5  (A4YCQ7), RPO5_METTH  (O27122), RPO5_METTP  (A0B555), 
RPO5_METVS  (P41559), RPO5_PYRAB  (Q9V116), RPO5_PYRFU  (Q8U0M2), 
RPO5_PYRHO  (O74019), RPO5_SACS2  (Q980Q9), RPO5_SACSH  (B8YB60), 
RPO5_SULAC  (P11521), RPO5_SULIA  (C3MZM6), RPO5_SULIK  (C4KIV6), 
RPO5_SULIL  (C3MRK1), RPO5_SULIM  (C3MY97), RPO5_SULIN  (C3NFS5), 
RPO5_SULIY  (C3N7P8), RPO5_SULTO  (Q976A3), RPO5_THEAC  (Q03588), 
RPO5_THECE  (P31815), RPO5_THEGJ  (C5A210), RPO5_THEKO  (Q5JE31), 
RPO5_THEON  (B6YT14), RPO5_THEPD  (A1RWW7), RPO5_THESM  (C6A1F8), 
RPO5_THEVO  (Q979F2)
» more

UniProtKB/Swiss-Prot
False negative sequences
8 sequences

RPO5_META3  (A6UV53), RPO5_METBU  (Q12WS3), RPO5_METLZ  (A2SSM7), 
RPO5_METM7  (A6VGU6), RPO5_METST  (Q2NEK1), RPO5_NITMS  (A9A458), 
RPO5_PYRAE  (Q8ZYR0), RPO5_STAMF  (A3DMP2)
» more

PDB
[Detailed view]
320 PDB

1DZF; 1EIK; 1HMJ; 1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2WAQ; 2WB1; 2Y0S; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4AYB; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4V1M; 4V1N; 4V1O; 4V8S; 4X67; 4X6A; 4Y52; 4Y7N; 4YM7; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 5W5Y; 5W64; 5W65; 5W66; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6CNB; 6CNC; 6CND; 6CNF; 6DRD; 6EU0; 6EU1; 6EU2; 6EU3; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6H67; 6H68; 6HKO; 6HLQ; 6HLR; 6HLS; 6I84; 6KF3; 6KF4; 6KF9; 6O6C; 6O9L; 6RQH; 6RQL; 6RQT; 6RRD; 6RUI; 6RUO; 6RWE; 6TPS; 6TUT; 6UPX; 6UPY; 6UPZ; 6UQ0; 6UQ1; 6UQ2; 6UQ3; 6XRE; 7A6H; 7AE1; 7AE3; 7AEA; 7AOC; 7AOD; 7AOE; 7AST; 7D58; 7D59; 7DN3; 7DU2; 7EU0; 7EU1; 7FJI; 7FJJ; 7KED; 7KEE; 7KEF; 7LBM; 7MEI; 7MK9; 7MKA; 7ML0; 7ML1; 7ML2; 7ML4; 7NKX; 7NKY; 7O4I; 7O4J; 7O72; 7O73; 7O75; 7OB9; 7OBA; 7OBB; 7OK0; 7OQ4; 7OQY; 7RIM; 7RIP; 7RIQ; 7RIW; 7RIX; 7RIY; 7UI9; 7UIF; 7UIO; 7VBA; 7VBB; 7VBC; 7Z0H; 7Z1L; 7Z1M; 7Z1N; 7Z1O; 7Z2Z; 7Z30; 7Z31; 7ZS9; 7ZSA; 7ZSB; 8A40; 8A43; 8BWS; 8CEN; 8CEO; 8CRO; 8ITY; 8IUE; 8IUH; 8JCH; 8K5P; 8OKI; 8ORQ; 8P2I; 8RBO; 8TUG; 8TVP; 8TVQ; 8TVS; 8TVV; 8TVW; 8TVX; 8TVY; 8UKQ; 8UKR; 8UKS; 8UKT; 8UKU; 8XMB; 8XMC; 8XMD; 8XME; 9BCT; 9BCU; 9JA1
» more