PROSITE entry PS01110

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PURL: https://purl.expasy.org/prosite/signature/PS01110

Direct ScanProsite submission

General information about the entry

Entry name [info]	RNA_POL_H_23KD
Accession [info]	PS01110
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00854

Name and characterization of the entry

Description [info]	RNA polymerases H / 23 Kd subunits signature.
Pattern [info]	H-[NQEIVMYD]-[LIVMYAS]-V-P-[EKT]-H-x(2)-[LIVM]-x(2)-[DESAG]-[ET].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_04 which contains 573'661 sequence entries.

Total number of hits	55 in 55 different sequences
Number of true positive hits	55 in 55 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	8
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	87.30 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

55 sequences

RPAB1_BOVIN (Q2T9T3), RPAB1_CAEBR (A8XGH1), RPAB1_CAEEL (Q9N5K2),

RPAB1_CANGA (Q6FQA6), RPAB1_DEBHA (Q6BIJ0), RPAB1_DICDI (Q54EH2), 
RPAB1_EREGS (Q757H7), RPAB1_HUMAN (P19388), RPAB1_KLULA (Q6CJ62), 
RPAB1_KLUMA (Q9P4B9), RPAB1_MOUSE (Q80UW8), RPAB1_PONAB (Q5R587), 
RPAB1_RAT   (B0BNE2), RPAB1_SCHPO (Q09191), RPAB1_YARLI (Q6CA26), 
RPAB1_YEAST (P20434), RPB5A_ARATH (O81098), RPO5_AERPE  (Q9YAT3), 
RPO5_ARCFU  (O28394), RPO5_HALS3  (B0R8D7), RPO5_HALSA  (P0CX06), 
RPO5_HYPBU  (A2BN32), RPO5_METAC  (Q8TRB4), RPO5_METBF  (Q464Y4), 
RPO5_METJA  (Q58443), RPO5_METKA  (Q8TXI5), RPO5_METM5  (A4FWF9), 
RPO5_METM6  (A9A9V3), RPO5_METMA  (Q8PUQ8), RPO5_METMP  (P61519), 
RPO5_METS5  (A4YCQ7), RPO5_METTH  (O27122), RPO5_METTP  (A0B555), 
RPO5_METVS  (P41559), RPO5_PYRAB  (Q9V116), RPO5_PYRFU  (Q8U0M2), 
RPO5_PYRHO  (O74019), RPO5_SACI1  (C3NFS5), RPO5_SACI2  (C3MRK1), 
RPO5_SACI3  (C3MZM6), RPO5_SACI4  (C3MY97), RPO5_SACI6  (C4KIV6), 
RPO5_SACI7  (C3N7P8), RPO5_SACS2  (Q980Q9), RPO5_SACSH  (B8YB60), 
RPO5_SULAC  (P11521), RPO5_SULTO  (Q976A3), RPO5_THEAC  (Q03588), 
RPO5_THECE  (P31815), RPO5_THEGJ  (C5A210), RPO5_THEKO  (Q5JE31), 
RPO5_THEON  (B6YT14), RPO5_THEPD  (A1RWW7), RPO5_THESM  (C6A1F8), 
RPO5_THEVO  (Q979F2)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

8 sequences

RPO5_META3  (A6UV53), RPO5_METBU  (Q12WS3), RPO5_METLZ  (A2SSM7),

RPO5_METM7  (A6VGU6), RPO5_METST  (Q2NEK1), RPO5_NITMS  (A9A458), 
RPO5_PYRAE  (Q8ZYR0), RPO5_STAMF  (A3DMP2)

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PDB
[Detailed view]

338 PDB

pdb_00001dzf; pdb_00001eik; pdb_00001hmj; pdb_00001i3q; pdb_00001i50; pdb_00001i6h; pdb_00001k83; pdb_00001nik; pdb_00001nt9; pdb_00001pqv; pdb_00001r5u; pdb_00001r9s; pdb_00001r9t; pdb_00001sfo; pdb_00001twa; pdb_00001twc; pdb_00001twf; pdb_00001twg; pdb_00001twh; pdb_00001wcm; pdb_00001y1v; pdb_00001y1w; pdb_00001y1y; pdb_00001y77; pdb_00002b63; pdb_00002b8k; pdb_00002e2h; pdb_00002e2i; pdb_00002e2j; pdb_00002ja5; pdb_00002ja6; pdb_00002ja7; pdb_00002ja8; pdb_00002nvq; pdb_00002nvt; pdb_00002nvx; pdb_00002nvy; pdb_00002nvz; pdb_00002pmz; pdb_00002r7z; pdb_00002r92; pdb_00002r93; pdb_00002vum; pdb_00002waq; pdb_00002wb1; pdb_00002y0s; pdb_00002yu9; pdb_00003cqz; pdb_00003fki; pdb_00003gtg; pdb_00003gtj; pdb_00003gtk; pdb_00003gtl; pdb_00003gtm; pdb_00003gto; pdb_00003gtp; pdb_00003gtq; pdb_00003h0g; pdb_00003h3v; pdb_00003hkz; pdb_00003hou; pdb_00003hov; pdb_00003how; pdb_00003hox; pdb_00003hoy; pdb_00003hoz; pdb_00003i4m; pdb_00003i4n; pdb_00003j0k; pdb_00003j1n; pdb_00003k1f; pdb_00003k7a; pdb_00003m3y; pdb_00003m4o; pdb_00003po2; pdb_00003po3; pdb_00003qt1; pdb_00003rzd; pdb_00003rzo; pdb_00003s14; pdb_00003s15; pdb_00003s16; pdb_00003s17; pdb_00003s1m; pdb_00003s1n; pdb_00003s1q; pdb_00003s1r; pdb_00003s2d; pdb_00003s2h; pdb_00004a3b; pdb_00004a3c; pdb_00004a3d; pdb_00004a3e; pdb_00004a3f; pdb_00004a3g; pdb_00004a3i; pdb_00004a3j; pdb_00004a3k; pdb_00004a3l; pdb_00004a3m; pdb_00004a93; pdb_00004ayb; pdb_00004bbr; pdb_00004bbs; pdb_00004bxx; pdb_00004bxz; pdb_00004by1; pdb_00004by7; pdb_00004c2m; pdb_00004c3h; pdb_00004c3i; pdb_00004c3j; pdb_00004qiw; pdb_00004v1m; pdb_00004v1n; pdb_00004v1o; pdb_00004v8s; pdb_00004x67; pdb_00004x6a; pdb_00004y52; pdb_00004y7n; pdb_00004ym7; pdb_00005c3e; pdb_00005c44; pdb_00005c4a; pdb_00005c4j; pdb_00005c4x; pdb_00005fj8; pdb_00005fj9; pdb_00005fja; pdb_00005flm; pdb_00005fmf; pdb_00005fyw; pdb_00005fz5; pdb_00005g5l; pdb_00005ip7; pdb_00005ip9; pdb_00005iy6; pdb_00005iy7; pdb_00005iy8; pdb_00005iy9; pdb_00005iya; pdb_00005iyb; pdb_00005iyc; pdb_00005iyd; pdb_00005lmx; pdb_00005m3f; pdb_00005m3m; pdb_00005m5w; pdb_00005m5x; pdb_00005m5y; pdb_00005m64; pdb_00005n5y; pdb_00005n5z; pdb_00005n60; pdb_00005n61; pdb_00005oa1; pdb_00005oik; pdb_00005oqj; pdb_00005oqm; pdb_00005ot2; pdb_00005sva; pdb_00005u0s; pdb_00005u5q; pdb_00005vvr; pdb_00005vvs; pdb_00005w4u; pdb_00005w51; pdb_00005w5y; pdb_00005w64; pdb_00005w65; pdb_00005w66; pdb_00006blo; pdb_00006blp; pdb_00006bm2; pdb_00006bm4; pdb_00006bqf; pdb_00006cnb; pdb_00006cnc; pdb_00006cnd; pdb_00006cnf; pdb_00006drd; pdb_00006eu0; pdb_00006eu1; pdb_00006eu2; pdb_00006eu3; pdb_00006f40; pdb_00006f41; pdb_00006f42; pdb_00006f44; pdb_00006gyk; pdb_00006gyl; pdb_00006gym; pdb_00006h67; pdb_00006h68; pdb_00006hko; pdb_00006hlq; pdb_00006hlr; pdb_00006hls; pdb_00006i84; pdb_00006kf3; pdb_00006kf4; pdb_00006kf9; pdb_00006o6c; pdb_00006o9l; pdb_00006rqh; pdb_00006rql; pdb_00006rqt; pdb_00006rrd; pdb_00006rui; pdb_00006ruo; pdb_00006rwe; pdb_00006tps; pdb_00006tut; pdb_00006upx; pdb_00006upy; pdb_00006upz; pdb_00006uq0; pdb_00006uq1; pdb_00006uq2; pdb_00006uq3; pdb_00006xre; pdb_00007a6h; pdb_00007ae1; pdb_00007ae3; pdb_00007aea; pdb_00007aoc; pdb_00007aod; pdb_00007aoe; pdb_00007ast; pdb_00007d58; pdb_00007d59; pdb_00007dn3; pdb_00007du2; pdb_00007eu0; pdb_00007eu1; pdb_00007fji; pdb_00007fjj; pdb_00007ked; pdb_00007kee; pdb_00007kef; pdb_00007lbm; pdb_00007mei; pdb_00007mk9; pdb_00007mka; pdb_00007ml0; pdb_00007ml1; pdb_00007ml2; pdb_00007ml4; pdb_00007nkx; pdb_00007nky; pdb_00007o4i; pdb_00007o4j; pdb_00007o72; pdb_00007o73; pdb_00007o75; pdb_00007ob9; pdb_00007oba; pdb_00007obb; pdb_00007ok0; pdb_00007oq4; pdb_00007oqy; pdb_00007rim; pdb_00007rip; pdb_00007riq; pdb_00007riw; pdb_00007rix; pdb_00007riy; pdb_00007ui9; pdb_00007uif; pdb_00007uio; pdb_00007vba; pdb_00007vbb; pdb_00007vbc; pdb_00007z0h; pdb_00007z1l; pdb_00007z1m; pdb_00007z1n; pdb_00007z1o; pdb_00007z2z; pdb_00007z30; pdb_00007z31; pdb_00007zs9; pdb_00007zsa; pdb_00007zsb; pdb_00008a40; pdb_00008a43; pdb_00008bws; pdb_00008cen; pdb_00008ceo; pdb_00008cro; pdb_00008ity; pdb_00008iue; pdb_00008iuh; pdb_00008jch; pdb_00008k5p; pdb_00008oki; pdb_00008orq; pdb_00008p2i; pdb_00008qsz; pdb_00008ram; pdb_00008rap; pdb_00008rbo; pdb_00008tug; pdb_00008tvp; pdb_00008tvq; pdb_00008tvs; pdb_00008tvv; pdb_00008tvw; pdb_00008tvx; pdb_00008tvy; pdb_00008ukq; pdb_00008ukr; pdb_00008uks; pdb_00008ukt; pdb_00008uku; pdb_00008umh; pdb_00008umi; pdb_00008uoq; pdb_00008uot; pdb_00008xmb; pdb_00008xmc; pdb_00008xmd; pdb_00008xme; pdb_00009bct; pdb_00009bcu; pdb_00009bvt; pdb_00009bw0; pdb_00009ehz; pdb_00009ei1; pdb_00009ei3; pdb_00009ei4; pdb_00009fso; pdb_00009fsp; pdb_00009fsq; pdb_00009fsr; pdb_00009fss; pdb_00009ja1
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