PROSITE entry PS01116

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General information about the entry

Entry name [info]	XANTH_URACIL_PERMASE
Accession [info]	PS01116
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-DEC-2004 DATA UPDATE; 13-SEP-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00860

Name and characterization of the entry

Description [info]	Xanthine/uracil permeases family signature.
Pattern [info]	[LIVM]-P-x-[PASIF]-V-[LIVMG]-[GF]-[GA]-x(4)-[LIVM]-[FY]-[GSA]-x-[LIVM]- x(3)-[GA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_04 which contains 570'157 sequence entries.

Total number of hits	29 in 29 different sequences
Number of true positive hits	29 in 29 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	26
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	52.73 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

29 sequences

NUCLP_PAELB (A0A2A5JY22), PBUX_BACSU  (P42086), PUCJ_BACSU  (O32139),

PUCK_BACSU  (O32140), PYRP_BACCL  (P41006), PYRP_BACSU  (P39766), 
RUTG_ECOLI  (P75892), S23A2_HUMAN (Q9UGH3), S23A2_MOUSE (Q9EPR4), 
S23A2_RAT   (Q9WTW8), S23A2_XENTR (B0JZG0), UACT_ECOLI  (Q46821), 
UAPA_EMENI  (Q07307), UAPC_EMENI  (P48777), URAA_ECO57  (P0AGM8), 
URAA_ECOLI  (P0AGM7), URAA_HAEIN  (P45117), URAA_PASMU  (Q9CPL9), 
URAP_PAELB  (A0A2A5K1W4), XANP_ECO57  (P0AGN1), XANP_ECOL6  (P0AGN0), 
XANP_ECOLI  (P0AGM9), XANP_SHIFL  (P0AGN2), XANQ_ECO57  (P67446), 
XANQ_ECOL6  (P67445), XANQ_ECOLI  (P67444), Y397_CLOPE  (P50487), 
YI31_SCHPO  (Q9HE12), YWDJ_BACSU  (P39618)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

26 sequences

ADEP_ECOLI  (P31466), ADEQ_ECOLI  (P31440), AZG1_PAELB  (A0A2A5K5H4),

AZG2_PAELB  (A0A2A5K485), GHXP_ECO57  (P0AF53), GHXP_ECOLI  (P0AF52), 
GHXQ_ECOLI  (Q46817), LPE1_MAIZE  (Q41760), NAT10_ARATH (O04472), 
NAT11_ARATH (Q6SZ87), NAT12_ARATH (Q3E7D0), NAT1_ARATH  (Q9SHZ3), 
NAT2_ARATH  (Q94C70), NAT3_ARATH  (Q8GZD4), NAT4_ARATH  (P93039), 
NAT5_ARATH  (Q8RWE9), NAT6_ARATH  (Q27GI3), NAT7_ARATH  (Q0WPE9), 
NAT8_ARATH  (Q8VZQ5), NBAT9_ARATH (Q3E956), PBUG_BACSU  (O34987), 
PBUO_BACSU  (O34978), Y125_HAEIN  (P44530), Y326_METJA  (Q57772), 
YBBY_ECOLI  (P77328), YOOH_SCHPO  (O94300)

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PDB
[Detailed view]

3 PDB

3QE7; 5I6C; 5XLS