PROSITE entry PS01129
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General information about the entry
Entry name [info] | PSI_RLU |
Accession [info] | PS01129 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1995 CREATED;
01-APR-2006 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00869 |
Name and characterization of the entry
Description [info] | Rlu family of pseudouridine synthase signature. |
Pattern [info] |
[LIVCA]-[NHYTQ]-R-[LI]-[DG]-x(2)-[TV]-[STAC]-G-[LIVAGC]-[LIVMF](2)- [LIVMFGCA]-[SGTACV]. |
Numerical results [info]
Total number of hits | 125 in 125 different sequences |
Number of true positive hits | 125 in 125 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 13 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 90.58 % |
Comments [info]
Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 2 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
125 sequences
PUS1_ARATH (Q7XA65), PUS1_ORYSJ (Q2QNM3), PUS2_ARATH (Q3ECD0), PUS2_ORYSJ (Q5Z8P2), PUS3_ARATH (Q5XET6), PUS5_ARATH (Q5M721), PUS5_ASHGO (Q750S3), PUS5_CANAL (Q5A0Y2), PUS5_DEBHA (Q6BNX8), PUS5_ORYSJ (Q0DST9), PUS5_YEAST (Q06244), PUS6_YEAST (P53294), PUS7_ARATH (Q9LU60), PUS7_ORYSJ (Q0E0Y3), PUS9_YEAST (Q12069), RIB2_YEAST (Q12362), RLUA_ECO57 (Q8XA10), RLUA_ECOL6 (Q8FL93), RLUA_ECOLI (P0AA37), RLUA_HAEDU (P59831), RLUA_HAEIN (P44782), RLUA_PASMU (Q9CK02), RLUA_SALTI (Q8Z9J5), RLUA_SALTY (Q8ZRV9), RLUA_SHIFL (P0AA38), RLUA_VIBCH (Q9KP71), RLUA_VIBPA (Q87LD3), RLUA_VIBVU (Q8DCG0), RLUA_YERPE (Q8ZIK1), RLUC_BUCAI (P57430), RLUC_BUCAP (Q8K9J8), RLUC_BUCBP (Q89AH2), RLUC_ECO57 (Q8X8J3), RLUC_ECOL6 (Q8FIP7), RLUC_ECOLI (P0AA39), RLUC_HAEDU (P59835), RLUC_HAEIN (P44433), RLUC_PASMU (Q9CM51), RLUC_PSEAE (Q9HZM9), RLUC_RICBR (Q1RJX7), RLUC_RICCN (Q92IS6), RLUC_RICFE (Q4UKQ3), RLUC_RICPR (Q9ZDR7), RLUC_RICTY (Q68XB2), RLUC_SALTI (Q8Z7J7), RLUC_SALTY (Q8ZQ16), RLUC_SHIFL (P0AA40), RLUC_VIBCH (Q9KQH0), RLUC_VIBPA (Q87N15), RLUC_VIBVU (Q8D8G1), RLUC_YERPE (Q8ZFU1), RLUD_BLOFL (P59838), RLUD_BORBU (P70870), RLUD_BUCAI (P57481), RLUD_BUCAP (Q8K9E9), RLUD_BUCBP (Q89AD9), RLUD_ECO57 (Q8X9F0), RLUD_ECOL6 (P65834), RLUD_ECOLI (P33643), RLUD_HAEDU (Q9L7A7), RLUD_HAEIN (P44445), RLUD_NEIMA (Q9JVB6), RLUD_NEIMB (Q9K0B0), RLUD_NITEU (Q82WZ5), RLUD_PASMU (Q9CKA6), RLUD_PSEAE (P33640), RLUD_RALN1 (Q8XYX8), RLUD_SALTI (P65837), RLUD_SALTY (P65836), RLUD_SHIFL (P65835), RLUD_VIBCH (Q9KU20), RLUD_VIBPA (Q87S65), RLUD_VIBVU (Q8DEV0), RLUD_XANAC (Q8PHN2), RLUD_XANCP (Q8P682), RLUD_XYLFA (Q9PET9), RLUD_XYLFT (Q87AR7), RLUD_YERPE (Q8ZBV7), RLUD_ZYMMO (P50513), RUSD2_HUMAN (Q8IZ73), RUSD2_MOUSE (Q149F1), RUSD4_BOVIN (Q5E9Z1), RUSD4_HUMAN (Q96CM3), RUSD4_MOUSE (Q9CWX4), RUSD4_RAT (Q4QQT0), RUSD4_XENTR (Q28C59), TRUC_ECO57 (Q8X6T6), TRUC_ECOL6 (Q8FEF9), TRUC_ECOLI (P0AA41), TRUC_HAEDU (P59840), TRUC_HAEIN (P44197), TRUC_PASMU (Q9CNF3), TRUC_PECCC (Q47417), TRUC_SALTI (Q8Z439), TRUC_SALTY (Q8ZMD5), TRUC_SHIFL (P0AA42), TRUC_VIBCH (Q9KTL4), TRUC_VIBPA (Q87MD4), TRUC_VIBVU (Q8DBG5), TRUC_YERPE (Q8ZH72), Y042_HAEIN (P43930), Y1540_MYCTO (P9WHQ2), Y1540_MYCTU (P9WHQ3), Y1567_MYCBO (P0A5T3), Y1592_SYNY3 (P72970), Y1629_SYNY3 (P74346), Y1758_AQUAE (O67638), Y209_MYCGE (P47451), Y292_MYCPN (P75485), Y347_HELPJ (Q9ZMA1), Y347_HELPY (O25114), Y370_MYCGE (P47610), Y505_ZYMMO (O66114), Y548_MYCPN (P75230), Y723_CHLP8 (O50310), Y745_HELPJ (Q9ZL98), Y745_HELPY (O25441), Y901_CHLAA (Q45826), Y956_HELPJ (Q9ZKP5), Y956_HELPY (O25610), YA32_SCHPO (Q09709), YHCT_BACSU (P54604), YJBO_BACSU (O31613), YK27_CAEEL (O16686), YLYB_BACSU (Q45480)» more
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UniProtKB/Swiss-Prot False negative sequences |
13 sequences
PUS3_ORYSJ (Q0J4D4), PUS4_ARATH (Q9LT72), PUS4_ORYSJ (Q69K07), PUS6_ARATH (Q9SVS0), RUSD1_BOVIN (Q17QT4), RUSD1_DANRE (Q08C69), RUSD1_HUMAN (Q9UJJ7), RUSD1_MOUSE (Q8VCZ8), RUSD3_BOVIN (Q2TBK7), RUSD3_HUMAN (Q6P087), RUSD3_MOUSE (Q14AI6), RUSD4_DANRE (Q6DBR0), Y714_MYCCT (P45614)» more |
PDB [Detailed view] |
9 PDB
1PRZ; 1QYU; 1V9F; 1V9K; 1XPI; 2I82; 2IST; 5UBA; 7BL5 |