PROSITE entry PS01137

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General information about the entry

Entry name [info]	TATD_1
Accession [info]	PS01137
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-DEC-2001 DATA UPDATE; 13-SEP-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00836

Name and characterization of the entry

Description [info]	TatD deoxyribonuclease family signature 1.
Pattern [info]	[LIVMFY](2)-D-[STA]-H-x-H-[LIVMFP]-[DN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_04 which contains 570'157 sequence entries.

Total number of hits	28 in 28 different sequences
Number of true positive hits	19 in 19 different sequences
Number of 'unknown' hits	0
Number of false positive hits	9 in 9 different sequences
Number of false negative sequences	32
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	67.86 %
Recall (true positives / (true positives + false negatives))	37.25 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	19 sequences DTD3_SYNY3 (P73335), TATD2_HUMAN (Q93075), TATD_MYCTU (O08343), Y009_MYCGE (P47255), Y009_MYCPN (P78005), Y017_UREPA (Q9PRC8), Y081_HAEIN (P44500), Y1664_HAEIN (P45305), Y325_BUCBP (Q89AG7), Y343_BUCAP (Q8K9J1), Y355_BUCAI (P57436), Y454_HAEIN (P44718), Y761_METJA (Q58171), YABD_BACSU (P37545), YCFH_ECO57 (P0AFQ9), YCFH_ECOL6 (P0AFQ8), YCFH_ECOLI (P0AFQ7), YJJV_ECOLI (P39408), YMES_GEOSE (P23918) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	32 sequences TATD1_ENCCU (Q8SW70), TATD1_ENTBH (B7XJI2), TATD1_NOSCE (C4VAS3), TATD_CITK8 (A8ACY8), TATD_CITRI (D2TUZ4), TATD_CROS8 (A7MQN1), TATD_CROTZ (C9XTA5), TATD_DICD3 (E0SLH6), TATD_ECOLI (P27859), TATD_EDWTE (D0Z9R0), TATD_ENT38 (A4WFX9), TATD_ENTLS (E3G381), TATD_ERWAE (D4ICL5), TATD_ERWBE (D8MKW4), TATD_ERWT9 (B2VG45), TATD_ESCF3 (B7LTZ5), TATD_KLEP3 (B5XYH5), TATD_MUSP7 (C6C4V4), TATD_PANAM (D4GGR2), TATD_PANSA (E6WHK1), TATD_PANVC (E1SKR8), TATD_PECAS (Q6DAQ1), TATD_PECCP (C6DI71), TATD_PECPW (D0KC77), TATD_RAHSY (E8XYF5), TATD_SALTY (Q9L6M2), TATD_SERP5 (A8G8C4), TATD_SHIF8 (Q0SZ31), TATD_YERPY (B1JP69), Y1582_METJA (Q58977), YBF5_YEAST (P34220), YNF8_SCHPO (Q9UUF1) » more
UniProtKB/Swiss-Prot False positive sequences	9 sequences ADEC_LACDA (Q1G825), ALLB_STRAW (Q82LL4), ALLB_STRCO (Q9RKU5), ALN1_DICDI (Q54SV3), ALN2_DICDI (Q55C91), ALN_YEAST (P32375), ATZC_PSESD (O52063), NOD2_MOUSE (Q8K3Z0), RDRP_BMV(P03594) » more
PDB [Detailed view]	2 PDB 1YIX; 1ZZM