PROSITE entry PS01137

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	TATD_1
Accession [info]	PS01137
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-DEC-2001 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00836

Name and characterization of the entry

Description [info]	TatD deoxyribonuclease family signature 1.
Pattern [info]	[LIVMFY](2)-D-[STA]-H-x-H-[LIVMFP]-[DN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	28 in 28 different sequences
Number of true positive hits	19 in 19 different sequences
Number of 'unknown' hits	0
Number of false positive hits	9 in 9 different sequences
Number of false negative sequences	32
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	67.86 %
Recall (true positives / (true positives + false negatives))	37.25 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	19 sequences DTD3_SYNY3 (P73335), TATD2_HUMAN (Q93075), TATD_MYCTU (O08343), Y009_MYCGE (P47255), Y009_MYCPN (P78005), Y017_UREPA (Q9PRC8), Y081_HAEIN (P44500), Y1664_HAEIN (P45305), Y325_BUCBP (Q89AG7), Y343_BUCAP (Q8K9J1), Y355_BUCAI (P57436), Y454_HAEIN (P44718), Y761_METJA (Q58171), YABD_BACSU (P37545), YCFH_ECO57 (P0AFQ9), YCFH_ECOL6 (P0AFQ8), YCFH_ECOLI (P0AFQ7), YJJV_ECOLI (P39408), YMES_GEOSE (P23918) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	32 sequences TATD1_ENCCU (Q8SW70), TATD1_ENTBH (B7XJI2), TATD1_VAIC1 (C4VAS3), TATD_CITK8 (A8ACY8), TATD_CITRI (D2TUZ4), TATD_CROS8 (A7MQN1), TATD_CROTZ (C9XTA5), TATD_DICD3 (E0SLH6), TATD_ECOLI (P27859), TATD_EDWTE (D0Z9R0), TATD_ENT38 (A4WFX9), TATD_ENTLS (E3G381), TATD_ERWAE (D4ICL5), TATD_ERWBE (D8MKW4), TATD_ERWT9 (B2VG45), TATD_ESCF3 (B7LTZ5), TATD_KLEP3 (B5XYH5), TATD_MUSP7 (C6C4V4), TATD_PANAM (D4GGR2), TATD_PANSA (E6WHK1), TATD_PANVC (E1SKR8), TATD_PECAS (Q6DAQ1), TATD_PECCP (C6DI71), TATD_PECPW (D0KC77), TATD_RAHSY (E8XYF5), TATD_SALTY (Q9L6M2), TATD_SERP5 (A8G8C4), TATD_SHIF8 (Q0SZ31), TATD_YERPY (B1JP69), Y1582_METJA (Q58977), YBF5_YEAST (P34220), YNF8_SCHPO (Q9UUF1) » more
UniProtKB/Swiss-Prot False positive sequences	9 sequences ADEC_LACDA (Q1G825), ALLB_STRAW (Q82LL4), ALLB_STRCO (Q9RKU5), ALN1_DICDI (Q54SV3), ALN2_DICDI (Q55C91), ALN_YEAST (P32375), ATZC_PSESD (O52063), NOD2_MOUSE (Q8K3Z0), RDRP_BMV(P03594) » more
PDB [Detailed view]	2 PDB 1YIX; 1ZZM