PROSITE entry PS01154

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PURL: https://purl.expasy.org/prosite/signature/PS01154

Direct ScanProsite submission

General information about the entry

Entry name [info]	RNA_POL_L_13KD
Accession [info]	PS01154
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00889

Name and characterization of the entry

Description [info]	RNA polymerases L / 13 to 16 Kd subunits signature.
Pattern [info]	[LIVMFA]-x(2)-[EYD]-x-[HYN]-[ST]-[LIVMFY]-x-[NSTR]-x-[LIV]-x(3)-[LIVA]- x(4,5)-[VPG]-x(4)-[FY]-x(3)-[HPY]-[PEV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.

Total number of hits	70 in 70 different sequences
Number of true positive hits	70 in 70 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	4
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	94.59 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

70 sequences

NRPBB_ARATH (Q38859), RPAC2_BOVIN (Q1RMG8), RPAC2_CAEBR (Q61IX2),

RPAC2_CAEEL (P34476), RPAC2_DANRE (Q6DRI4), RPAC2_DROME (Q9VIZ0), 
RPAC2_HUMAN (P0DPB6), RPAC2_MOUSE (P97304), RPAC2_SCHPO (Q09177), 
RPAC2_XENLA (Q5XK67), RPAC2_YEAST (P28000), RPB11_ANOGA (Q7PVQ9), 
RPB11_BOVIN (Q32P79), RPB11_CAEBR (Q60SM4), RPB11_CAEEL (Q9XVH6), 
RPB11_DROME (Q9VJE4), RPB11_HUMAN (P52435), RPB11_MOUSE (O08740), 
RPB11_PLABA (Q4YZZ7), RPB11_PLACU (Q4XS21), RPB11_PLAF7 (Q8IER7), 
RPB11_SCHPO (P87123), RPB11_YEAST (P38902), RPB1B_HUMAN (Q9GZM3), 
RPB1C_HUMAN (Q9H1A7), RPC19_DICDI (Q54ES6), RPO11_AERPE (Q9YEZ1), 
RPO11_ARCFU (O30032), RPO11_HALLT (B9LTT8), RPO11_HALMA (Q5V2C7), 
RPO11_HALS3 (B0R4B1), RPO11_HALSA (Q9HR53), RPO11_HALWD (Q18JI2), 
RPO11_KORCO (B1L7Q7), RPO11_METAC (Q8TSS4), RPO11_METBF (Q46C10), 
RPO11_METBU (Q12W27), RPO11_METJA (Q57832), RPO11_METKA (Q8TZ81), 
RPO11_METM5 (A4FZS6), RPO11_METM6 (A9A836), RPO11_METM7 (A6VIQ1), 
RPO11_METMA (Q8PVT0), RPO11_METMP (Q6M0K9), RPO11_METS5 (A4YHV0), 
RPO11_METTH (O27372), RPO11_METVS (A6URP9), RPO11_NANEQ (Q74MN9), 
RPO11_NATPD (Q3INY0), RPO11_PICTO (Q6L204), RPO11_PYRAB (Q9V2M4), 
RPO11_PYRAE (Q8ZW46), RPO11_PYRFU (Q8U4N1), RPO11_PYRHO (P57671), 
RPO11_SACI1 (C3NFY8), RPO11_SACI2 (C3MRD1), RPO11_SACI3 (C3MZG6), 
RPO11_SACI4 (C3MXM0), RPO11_SACI6 (C4KIP6), RPO11_SACI7 (C3N7I8), 
RPO11_SACS2 (Q980K0), RPO11_SACSH (B8YB62), RPO11_SULAC (P46217), 
RPO11_SULTO (Q96YA7), RPO11_THEAC (Q9HIC5), RPO11_THEGJ (C5A5J3), 
RPO11_THEKO (Q5JE88), RPO11_THEON (B6YTH7), RPO11_THESM (C6A1R5), 
RPO11_THEVO (Q978F5)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

4 sequences

RPB11_DICDI (Q86JJ5), RPO11_METAR (Q0W8P1), RPO11_METTP (A0B533),

YR470_MIMIV (Q5UQD9)

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PDB
[Detailed view]

339 PDB

pdb_00001i3q; pdb_00001i50; pdb_00001i6h; pdb_00001k83; pdb_00001nik; pdb_00001nt9; pdb_00001pqv; pdb_00001r5u; pdb_00001r9s; pdb_00001r9t; pdb_00001sfo; pdb_00001twa; pdb_00001twc; pdb_00001twf; pdb_00001twg; pdb_00001twh; pdb_00001wcm; pdb_00001xpp; pdb_00001y1v; pdb_00001y1w; pdb_00001y1y; pdb_00001y77; pdb_00002b63; pdb_00002b8k; pdb_00002e2h; pdb_00002e2i; pdb_00002e2j; pdb_00002ja5; pdb_00002ja6; pdb_00002ja7; pdb_00002ja8; pdb_00002nvq; pdb_00002nvt; pdb_00002nvx; pdb_00002nvy; pdb_00002nvz; pdb_00002pa8; pdb_00002pmz; pdb_00002r7z; pdb_00002r92; pdb_00002r93; pdb_00002vum; pdb_00002waq; pdb_00002wb1; pdb_00002y0s; pdb_00002yu9; pdb_00003cqz; pdb_00003fki; pdb_00003gtg; pdb_00003gtj; pdb_00003gtk; pdb_00003gtl; pdb_00003gtm; pdb_00003gto; pdb_00003gtp; pdb_00003gtq; pdb_00003h0g; pdb_00003h3v; pdb_00003hkz; pdb_00003hou; pdb_00003hov; pdb_00003how; pdb_00003hox; pdb_00003hoy; pdb_00003hoz; pdb_00003i4m; pdb_00003i4n; pdb_00003j0k; pdb_00003j1n; pdb_00003k1f; pdb_00003k7a; pdb_00003m3y; pdb_00003m4o; pdb_00003po2; pdb_00003po3; pdb_00003qt1; pdb_00003rzd; pdb_00003rzo; pdb_00003s14; pdb_00003s15; pdb_00003s16; pdb_00003s17; pdb_00003s1m; pdb_00003s1n; pdb_00003s1q; pdb_00003s1r; pdb_00003s2d; pdb_00003s2h; pdb_00004a3b; pdb_00004a3c; pdb_00004a3d; pdb_00004a3e; pdb_00004a3f; pdb_00004a3g; pdb_00004a3i; pdb_00004a3j; pdb_00004a3k; pdb_00004a3l; pdb_00004a3m; pdb_00004a93; pdb_00004ayb; pdb_00004bbr; pdb_00004bbs; pdb_00004bxx; pdb_00004bxz; pdb_00004by1; pdb_00004by7; pdb_00004c2m; pdb_00004c3h; pdb_00004c3i; pdb_00004c3j; pdb_00004qiw; pdb_00004qjv; pdb_00004v1m; pdb_00004v1n; pdb_00004v1o; pdb_00004v8s; pdb_00004x67; pdb_00004x6a; pdb_00004y52; pdb_00004y7n; pdb_00004ym7; pdb_00005c3e; pdb_00005c44; pdb_00005c4a; pdb_00005c4j; pdb_00005c4x; pdb_00005fj8; pdb_00005fj9; pdb_00005fja; pdb_00005flm; pdb_00005fmf; pdb_00005fyw; pdb_00005fz5; pdb_00005g5l; pdb_00005ip7; pdb_00005ip9; pdb_00005iy6; pdb_00005iy7; pdb_00005iy8; pdb_00005iy9; pdb_00005iya; pdb_00005iyb; pdb_00005iyc; pdb_00005iyd; pdb_00005lmx; pdb_00005m3f; pdb_00005m3m; pdb_00005m5w; pdb_00005m5x; pdb_00005m5y; pdb_00005m64; pdb_00005n5y; pdb_00005n5z; pdb_00005n60; pdb_00005n61; pdb_00005oa1; pdb_00005oik; pdb_00005oqj; pdb_00005oqm; pdb_00005ot2; pdb_00005sva; pdb_00005u0s; pdb_00005u5q; pdb_00005vvr; pdb_00005vvs; pdb_00005w4u; pdb_00005w51; pdb_00005w5y; pdb_00005w64; pdb_00005w65; pdb_00005w66; pdb_00006blo; pdb_00006blp; pdb_00006bm2; pdb_00006bm4; pdb_00006bqf; pdb_00006cnb; pdb_00006cnc; pdb_00006cnd; pdb_00006cnf; pdb_00006drd; pdb_00006eu0; pdb_00006eu1; pdb_00006eu2; pdb_00006eu3; pdb_00006f40; pdb_00006f41; pdb_00006f42; pdb_00006f44; pdb_00006gyk; pdb_00006gyl; pdb_00006gym; pdb_00006h67; pdb_00006h68; pdb_00006hko; pdb_00006hlq; pdb_00006hlr; pdb_00006hls; pdb_00006i84; pdb_00006kf3; pdb_00006kf4; pdb_00006kf9; pdb_00006o6c; pdb_00006o9l; pdb_00006rqh; pdb_00006rql; pdb_00006rqt; pdb_00006rrd; pdb_00006rui; pdb_00006ruo; pdb_00006rwe; pdb_00006tps; pdb_00006tut; pdb_00006upx; pdb_00006upy; pdb_00006upz; pdb_00006uq0; pdb_00006uq1; pdb_00006uq2; pdb_00006uq3; pdb_00006xre; pdb_00007a6h; pdb_00007ae1; pdb_00007ae3; pdb_00007aea; pdb_00007aoc; pdb_00007aod; pdb_00007aoe; pdb_00007ast; pdb_00007d58; pdb_00007d59; pdb_00007dn3; pdb_00007du2; pdb_00007eu0; pdb_00007eu1; pdb_00007fji; pdb_00007fjj; pdb_00007ked; pdb_00007kee; pdb_00007kef; pdb_00007lbm; pdb_00007mei; pdb_00007mk9; pdb_00007mka; pdb_00007ml0; pdb_00007ml1; pdb_00007ml2; pdb_00007ml4; pdb_00007nkx; pdb_00007nky; pdb_00007o4i; pdb_00007o4j; pdb_00007o72; pdb_00007o73; pdb_00007o75; pdb_00007ob9; pdb_00007oba; pdb_00007obb; pdb_00007ok0; pdb_00007oq4; pdb_00007oqy; pdb_00007rim; pdb_00007rip; pdb_00007riq; pdb_00007riw; pdb_00007rix; pdb_00007riy; pdb_00007ui9; pdb_00007uif; pdb_00007uio; pdb_00007vba; pdb_00007vbb; pdb_00007vbc; pdb_00007z0h; pdb_00007z1l; pdb_00007z1m; pdb_00007z1n; pdb_00007z1o; pdb_00007z2z; pdb_00007z30; pdb_00007z31; pdb_00007zs9; pdb_00007zsa; pdb_00007zsb; pdb_00008a43; pdb_00008bws; pdb_00008cen; pdb_00008ceo; pdb_00008cro; pdb_00008hyj; pdb_00008ity; pdb_00008iue; pdb_00008iuh; pdb_00008jch; pdb_00008k5p; pdb_00008oki; pdb_00008orq; pdb_00008p2i; pdb_00008qsz; pdb_00008ram; pdb_00008rap; pdb_00008rbo; pdb_00008tug; pdb_00008tvp; pdb_00008tvq; pdb_00008tvs; pdb_00008tvv; pdb_00008tvw; pdb_00008tvx; pdb_00008tvy; pdb_00008ukq; pdb_00008ukr; pdb_00008uks; pdb_00008ukt; pdb_00008uku; pdb_00008umh; pdb_00008umi; pdb_00008uoq; pdb_00008uot; pdb_00008xmb; pdb_00008xmc; pdb_00008xmd; pdb_00008xme; pdb_00009bct; pdb_00009bcu; pdb_00009bvt; pdb_00009bw0; pdb_00009ehz; pdb_00009ei1; pdb_00009ei3; pdb_00009ei4; pdb_00009fso; pdb_00009fsp; pdb_00009fsq; pdb_00009fsr; pdb_00009fss; pdb_00009ja1; pdb_00009mu9
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