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Entry: PS01154

General information about the entry

Entry name [info] RNA_POL_L_13KD
Accession [info] PS01154
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE;
10-APR-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC00889

Name and characterization of the entry

Description [info] RNA polymerases L / 13 to 16 Kd subunits signature.
Pattern [info]
[LIVMFA]-x(2)-[EYD]-x-[HYN]-[ST]-[LIVMFY]-x-[NSTR]-x-[LIV]-x(3)-[LIVA]-
x(4,5)-[VPG]-x(4)-[FY]-x(3)-[HPY]-[PEV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_03 which contains 559'634 sequence entries.


Total number of hits 69 in 69 different sequences
Number of true positive hits 69 in 69 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 4
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 94.52 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
69 sequences

NRPBB_ARATH (Q38859    ), RPAC2_BOVIN (Q1RMG8    ), RPAC2_CAEBR (Q61IX2    ), 
RPAC2_CAEEL (P34476    ), RPAC2_DANRE (Q6DRI4    ), RPAC2_DROME (Q9VIZ0    ), 
RPAC2_HUMAN (P0DPB6    ), RPAC2_MOUSE (P97304    ), RPAC2_SCHPO (Q09177    ), 
RPAC2_XENLA (Q5XK67    ), RPAC2_YEAST (P28000    ), RPB11_ANOGA (Q7PVQ9    ), 
RPB11_BOVIN (Q32P79    ), RPB11_CAEBR (Q60SM4    ), RPB11_CAEEL (Q9XVH6    ), 
RPB11_DROME (Q9VJE4    ), RPB11_HUMAN (P52435    ), RPB11_MOUSE (O08740    ), 
RPB11_PLABA (Q4YZZ7    ), RPB11_PLACH (Q4XS21    ), RPB11_PLAF7 (Q8IER7    ), 
RPB11_SCHPO (P87123    ), RPB11_YEAST (P38902    ), RPB1B_HUMAN (Q9GZM3    ), 
RPB1C_HUMAN (Q9H1A7    ), RPC19_DICDI (Q54ES6    ), RPOL_AERPE  (Q9YEZ1    ), 
RPOL_ARCFU  (O30032    ), RPOL_HALLT  (B9LTT8    ), RPOL_HALMA  (Q5V2C7    ), 
RPOL_HALS3  (B0R4B1    ), RPOL_HALSA  (Q9HR53    ), RPOL_HALWD  (Q18JI2    ), 
RPOL_KORCO  (B1L7Q7    ), RPOL_METAC  (Q8TSS4    ), RPOL_METBF  (Q46C10    ), 
RPOL_METBU  (Q12W27    ), RPOL_METJA  (Q57832    ), RPOL_METKA  (Q8TZ81    ), 
RPOL_METM5  (A4FZS6    ), RPOL_METM6  (A9A836    ), RPOL_METM7  (A6VIQ1    ), 
RPOL_METMA  (Q8PVT0    ), RPOL_METMP  (Q6M0K9    ), RPOL_METS5  (A4YHV0    ), 
RPOL_METTH  (O27372    ), RPOL_METVS  (A6URP9    ), RPOL_NANEQ  (Q74MN9    ), 
RPOL_NATPD  (Q3INY0    ), RPOL_PICTO  (Q6L204    ), RPOL_PYRAB  (Q9V2M4    ), 
RPOL_PYRAE  (Q8ZW46    ), RPOL_PYRFU  (Q8U4N1    ), RPOL_PYRHO  (P57671    ), 
RPOL_SACS2  (Q980K0    ), RPOL_SULAC  (P46217    ), RPOL_SULIA  (C3MZG6    ), 
RPOL_SULIK  (C4KIP6    ), RPOL_SULIL  (C3MRD1    ), RPOL_SULIM  (C3MXM0    ), 
RPOL_SULIN  (C3NFY8    ), RPOL_SULIY  (C3N7I8    ), RPOL_SULTO  (Q96YA7    ), 
RPOL_THEAC  (Q9HIC5    ), RPOL_THEGJ  (C5A5J3    ), RPOL_THEKO  (Q5JE88    ), 
RPOL_THEON  (B6YTH7    ), RPOL_THESM  (C6A1R5    ), RPOL_THEVO  (Q978F5    )
» more

UniProtKB/Swiss-Prot
False negative sequences
4 sequences

RPB11_DICDI (Q86JJ5    ), RPOL_METAR  (Q0W8P1    ), RPOL_METTP  (A0B533    ), 
YR470_MIMIV (Q5UQD9    )
» more

PDB
[Detailed view]
189 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1XPP; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PA8; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4QJV; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 5W5Y; 5W64; 5W65; 5W66; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6CNB; 6CNC; 6CND; 6CNF; 6EU0; 6EU1; 6EU2; 6EU3; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6H67; 6H68; 6I84
» more

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