PROSITE entry PS01154

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	RNA_POL_L_13KD
Accession [info]	PS01154
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00889

Name and characterization of the entry

Description [info]	RNA polymerases L / 13 to 16 Kd subunits signature.
Pattern [info]	[LIVMFA]-x(2)-[EYD]-x-[HYN]-[ST]-[LIVMFY]-x-[NSTR]-x-[LIV]-x(3)-[LIVA]- x(4,5)-[VPG]-x(4)-[FY]-x(3)-[HPY]-[PEV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.

Total number of hits	70 in 70 different sequences
Number of true positive hits	70 in 70 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	4
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	94.59 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

70 sequences

NRPBB_ARATH (Q38859), RPAC2_BOVIN (Q1RMG8), RPAC2_CAEBR (Q61IX2),

RPAC2_CAEEL (P34476), RPAC2_DANRE (Q6DRI4), RPAC2_DROME (Q9VIZ0), 
RPAC2_HUMAN (P0DPB6), RPAC2_MOUSE (P97304), RPAC2_SCHPO (Q09177), 
RPAC2_XENLA (Q5XK67), RPAC2_YEAST (P28000), RPB11_ANOGA (Q7PVQ9), 
RPB11_BOVIN (Q32P79), RPB11_CAEBR (Q60SM4), RPB11_CAEEL (Q9XVH6), 
RPB11_DROME (Q9VJE4), RPB11_HUMAN (P52435), RPB11_MOUSE (O08740), 
RPB11_PLABA (Q4YZZ7), RPB11_PLACU (Q4XS21), RPB11_PLAF7 (Q8IER7), 
RPB11_SCHPO (P87123), RPB11_YEAST (P38902), RPB1B_HUMAN (Q9GZM3), 
RPB1C_HUMAN (Q9H1A7), RPC19_DICDI (Q54ES6), RPO11_AERPE (Q9YEZ1), 
RPO11_ARCFU (O30032), RPO11_HALLT (B9LTT8), RPO11_HALMA (Q5V2C7), 
RPO11_HALS3 (B0R4B1), RPO11_HALSA (Q9HR53), RPO11_HALWD (Q18JI2), 
RPO11_KORCO (B1L7Q7), RPO11_METAC (Q8TSS4), RPO11_METBF (Q46C10), 
RPO11_METBU (Q12W27), RPO11_METJA (Q57832), RPO11_METKA (Q8TZ81), 
RPO11_METM5 (A4FZS6), RPO11_METM6 (A9A836), RPO11_METM7 (A6VIQ1), 
RPO11_METMA (Q8PVT0), RPO11_METMP (Q6M0K9), RPO11_METS5 (A4YHV0), 
RPO11_METTH (O27372), RPO11_METVS (A6URP9), RPO11_NANEQ (Q74MN9), 
RPO11_NATPD (Q3INY0), RPO11_PICTO (Q6L204), RPO11_PYRAB (Q9V2M4), 
RPO11_PYRAE (Q8ZW46), RPO11_PYRFU (Q8U4N1), RPO11_PYRHO (P57671), 
RPO11_SACS2 (Q980K0), RPO11_SACSH (B8YB62), RPO11_SULAC (P46217), 
RPO11_SULIA (C3MZG6), RPO11_SULIK (C4KIP6), RPO11_SULIL (C3MRD1), 
RPO11_SULIM (C3MXM0), RPO11_SULIN (C3NFY8), RPO11_SULIY (C3N7I8), 
RPO11_SULTO (Q96YA7), RPO11_THEAC (Q9HIC5), RPO11_THEGJ (C5A5J3), 
RPO11_THEKO (Q5JE88), RPO11_THEON (B6YTH7), RPO11_THESM (C6A1R5), 
RPO11_THEVO (Q978F5)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

4 sequences

RPB11_DICDI (Q86JJ5), RPO11_METAR (Q0W8P1), RPO11_METTP (A0B533),

YR470_MIMIV (Q5UQD9)

» more

PDB
[Detailed view]

308 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1XPP; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PA8; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2WAQ; 2WB1; 2Y0S; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4AYB; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4QJV; 4V1M; 4V1N; 4V1O; 4V8S; 4X67; 4X6A; 4Y52; 4Y7N; 4YM7; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 5W5Y; 5W64; 5W65; 5W66; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6CNB; 6CNC; 6CND; 6CNF; 6DRD; 6EU0; 6EU1; 6EU2; 6EU3; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6H67; 6H68; 6HKO; 6HLQ; 6HLR; 6HLS; 6I84; 6KF3; 6KF4; 6KF9; 6O6C; 6O9L; 6RQH; 6RQL; 6RQT; 6RRD; 6RUI; 6RUO; 6RWE; 6TPS; 6TUT; 6UPX; 6UPY; 6UPZ; 6UQ0; 6UQ1; 6UQ2; 6UQ3; 6XRE; 7A6H; 7AE1; 7AE3; 7AEA; 7AOC; 7AOD; 7AOE; 7AST; 7D58; 7D59; 7DN3; 7DU2; 7EU0; 7EU1; 7FJI; 7FJJ; 7KED; 7KEE; 7KEF; 7LBM; 7MEI; 7MK9; 7MKA; 7ML0; 7ML1; 7ML2; 7ML4; 7NKX; 7NKY; 7O4I; 7O4J; 7O72; 7O73; 7O75; 7OB9; 7OBA; 7OBB; 7OK0; 7OQ4; 7OQY; 7RIM; 7RIP; 7RIQ; 7RIW; 7RIX; 7RIY; 7UI9; 7UIF; 7UIO; 7VBA; 7VBB; 7VBC; 7Z0H; 7Z1L; 7Z1M; 7Z1N; 7Z1O; 7Z2Z; 7Z30; 7Z31; 7ZS9; 7ZSA; 7ZSB; 8A43; 8BWS; 8CEN; 8CEO; 8HYJ; 8ITY; 8IUE; 8IUH; 8JCH; 8K5P; 8TUG; 8TVP; 8TVQ; 8TVS; 8TVV; 8TVW; 8TVX; 8TVY; 8UKQ; 8UKR; 8UKS; 8UKT; 8UKU
» more