PROSITE entry PS01154

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General information about the entry

Entry name [info]	RNA_POL_L_13KD
Accession [info]	PS01154
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00889

Name and characterization of the entry

Description [info]	RNA polymerases L / 13 to 16 Kd subunits signature.
Pattern [info]	[LIVMFA]-x(2)-[EYD]-x-[HYN]-[ST]-[LIVMFY]-x-[NSTR]-x-[LIV]-x(3)-[LIVA]- x(4,5)-[VPG]-x(4)-[FY]-x(3)-[HPY]-[PEV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.

Total number of hits	70 in 70 different sequences
Number of true positive hits	70 in 70 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	4
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	94.59 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

70 sequences

NRPBB_ARATH (Q38859), RPAC2_BOVIN (Q1RMG8), RPAC2_CAEBR (Q61IX2),

RPAC2_CAEEL (P34476), RPAC2_DANRE (Q6DRI4), RPAC2_DROME (Q9VIZ0), 
RPAC2_HUMAN (P0DPB6), RPAC2_MOUSE (P97304), RPAC2_SCHPO (Q09177), 
RPAC2_XENLA (Q5XK67), RPAC2_YEAST (P28000), RPB11_ANOGA (Q7PVQ9), 
RPB11_BOVIN (Q32P79), RPB11_CAEBR (Q60SM4), RPB11_CAEEL (Q9XVH6), 
RPB11_DROME (Q9VJE4), RPB11_HUMAN (P52435), RPB11_MOUSE (O08740), 
RPB11_PLABA (Q4YZZ7), RPB11_PLACU (Q4XS21), RPB11_PLAF7 (Q8IER7), 
RPB11_SCHPO (P87123), RPB11_YEAST (P38902), RPB1B_HUMAN (Q9GZM3), 
RPB1C_HUMAN (Q9H1A7), RPC19_DICDI (Q54ES6), RPO11_AERPE (Q9YEZ1), 
RPO11_ARCFU (O30032), RPO11_HALLT (B9LTT8), RPO11_HALMA (Q5V2C7), 
RPO11_HALS3 (B0R4B1), RPO11_HALSA (Q9HR53), RPO11_HALWD (Q18JI2), 
RPO11_KORCO (B1L7Q7), RPO11_METAC (Q8TSS4), RPO11_METBF (Q46C10), 
RPO11_METBU (Q12W27), RPO11_METJA (Q57832), RPO11_METKA (Q8TZ81), 
RPO11_METM5 (A4FZS6), RPO11_METM6 (A9A836), RPO11_METM7 (A6VIQ1), 
RPO11_METMA (Q8PVT0), RPO11_METMP (Q6M0K9), RPO11_METS5 (A4YHV0), 
RPO11_METTH (O27372), RPO11_METVS (A6URP9), RPO11_NANEQ (Q74MN9), 
RPO11_NATPD (Q3INY0), RPO11_PICTO (Q6L204), RPO11_PYRAB (Q9V2M4), 
RPO11_PYRAE (Q8ZW46), RPO11_PYRFU (Q8U4N1), RPO11_PYRHO (P57671), 
RPO11_SACS2 (Q980K0), RPO11_SACSH (B8YB62), RPO11_SULAC (P46217), 
RPO11_SULIA (C3MZG6), RPO11_SULIK (C4KIP6), RPO11_SULIL (C3MRD1), 
RPO11_SULIM (C3MXM0), RPO11_SULIN (C3NFY8), RPO11_SULIY (C3N7I8), 
RPO11_SULTO (Q96YA7), RPO11_THEAC (Q9HIC5), RPO11_THEGJ (C5A5J3), 
RPO11_THEKO (Q5JE88), RPO11_THEON (B6YTH7), RPO11_THESM (C6A1R5), 
RPO11_THEVO (Q978F5)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

4 sequences

RPB11_DICDI (Q86JJ5), RPO11_METAR (Q0W8P1), RPO11_METTP (A0B533),

YR470_MIMIV (Q5UQD9)

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PDB
[Detailed view]

320 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1XPP; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PA8; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2WAQ; 2WB1; 2Y0S; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4AYB; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4QJV; 4V1M; 4V1N; 4V1O; 4V8S; 4X67; 4X6A; 4Y52; 4Y7N; 4YM7; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 5W5Y; 5W64; 5W65; 5W66; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6CNB; 6CNC; 6CND; 6CNF; 6DRD; 6EU0; 6EU1; 6EU2; 6EU3; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6H67; 6H68; 6HKO; 6HLQ; 6HLR; 6HLS; 6I84; 6KF3; 6KF4; 6KF9; 6O6C; 6O9L; 6RQH; 6RQL; 6RQT; 6RRD; 6RUI; 6RUO; 6RWE; 6TPS; 6TUT; 6UPX; 6UPY; 6UPZ; 6UQ0; 6UQ1; 6UQ2; 6UQ3; 6XRE; 7A6H; 7AE1; 7AE3; 7AEA; 7AOC; 7AOD; 7AOE; 7AST; 7D58; 7D59; 7DN3; 7DU2; 7EU0; 7EU1; 7FJI; 7FJJ; 7KED; 7KEE; 7KEF; 7LBM; 7MEI; 7MK9; 7MKA; 7ML0; 7ML1; 7ML2; 7ML4; 7NKX; 7NKY; 7O4I; 7O4J; 7O72; 7O73; 7O75; 7OB9; 7OBA; 7OBB; 7OK0; 7OQ4; 7OQY; 7RIM; 7RIP; 7RIQ; 7RIW; 7RIX; 7RIY; 7UI9; 7UIF; 7UIO; 7VBA; 7VBB; 7VBC; 7Z0H; 7Z1L; 7Z1M; 7Z1N; 7Z1O; 7Z2Z; 7Z30; 7Z31; 7ZS9; 7ZSA; 7ZSB; 8A43; 8BWS; 8CEN; 8CEO; 8CRO; 8HYJ; 8ITY; 8IUE; 8IUH; 8JCH; 8K5P; 8OKI; 8ORQ; 8P2I; 8RBO; 8TUG; 8TVP; 8TVQ; 8TVS; 8TVV; 8TVW; 8TVX; 8TVY; 8UKQ; 8UKR; 8UKS; 8UKT; 8UKU; 8XMB; 8XMC; 8XMD; 8XME; 9BCT; 9BCU; 9JA1
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