Home  |  Contact
Entry: PS01207

General information about the entry

Entry name [info] GLYPICAN
Accession [info] PS01207
Entry type [info] PATTERN
Date [info] 01-NOV-1997 CREATED;
01-APR-2006 DATA UPDATE;
16-OCT-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC00927

Name and characterization of the entry

Description [info] Glypicans signature.
Pattern [info] 
C-x(2)-C-x-[GS]-[LIVM]-x(4)-P-C-x(2)-[FY]-C-x(2)-[LIVM]-x(2)-G-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_09 which contains 561'176 sequence entries.


Total number of hits 20 in 20 different sequences
Number of true positive hits 20 in 20 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 95.24 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 20 sequences 

GPC1_BOVIN  (G3X745    ), GPC1_CHICK  (P50593    ), GPC1_DANRE  (F1QCC6    ), 

GPC1_HUMAN  (P35052    ), GPC1_MOUSE  (Q9QZF2    ), GPC1_RAT    (P35053    ), 
GPC2_HUMAN  (Q8N158    ), GPC2_MOUSE  (Q8BKV1    ), GPC2_RAT    (P51653    ), 
GPC3_HUMAN  (P51654    ), GPC3_MOUSE  (Q8CFZ4    ), GPC3_PANTR  (A5A6P7    ), 
GPC3_RAT    (P13265    ), GPC4_HUMAN  (O75487    ), GPC4_MOUSE  (P51655    ), 
GPC5_HUMAN  (P78333    ), GPC5_MOUSE  (Q8CAL5    ), GPC6_HUMAN  (Q9Y625    ), 
GPC6_MOUSE  (Q9R087    ), GPC6_PONAB  (Q5RE54    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 1 sequence 

DALY_DROME  (Q24114    )


				
	

	

		PDB
[Detailed view]		
		
			4 PDB
			


			4ACR; 4AD7; 4BWE; 4YWT
				
	





View entry in original PROSITE format


View entry in raw text format (no links)


Direct ScanProsite submission