PROSITE entry PS01213

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PURL: https://purl.expasy.org/prosite/signature/PS01213

Direct ScanProsite submission

General information about the entry

Entry name [info]	GLOBIN_FAM_2
Accession [info]	PS01213
Entry type [info]	PATTERN
Date [info]	01-NOV-1997 CREATED; 01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00933

Name and characterization of the entry

Description [info]	Protozoan/cyanobacterial globins signature.
Pattern [info]	F-[LF]-x(4)-[GE]-G-[PAT]-x(2)-[YW]-x-[GSE]-[KRQAE]-x(1,5)-[LIVM]-x(3)-H.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.

Total number of hits	18 in 18 different sequences
Number of true positive hits	18 in 18 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	6
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	75.00 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Site [info]	heme(?) at position 15
Version [info]	2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

18 sequences

TRHBN_MYCBO (P0A593), TRHBN_MYCPA (Q740T9), TRHBN_MYCSM (P0A594),

TRHBN_MYCTO (P9WN24), TRHBN_MYCTU (P9WN25), TRHBN_NOSCO (Q00812), 
TRHBN_NOSSN (P52335), TRHBN_PARCA (P15160), TRHBN_SYNY3 (P73925), 
TRHBN_TETPY (P17724), TRHBN_TETTH (Q03459), TRHBO_BACSU (O31607), 
TRHBO_MYCBO (P0A596), TRHBO_MYCLE (Q9CC59), TRHBO_MYCTO (P9WN22), 
TRHBO_MYCTU (P9WN23), TRHN1_CHLMO (Q08753), TRHN2_CHLMO (P52334)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

6 sequences

GLB31_LOTJA (P0DO64), GLB31_MEDTR (G7J2X4), GLB32_LOTJA (I3SAV1),

GLB32_MEDTR (G7I4F4), GLB3_ARATH  (Q67XG0), TRHBP_CAMJE (Q0PB48)

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PDB
[Detailed view]

28 PDB

pdb_00001dlw; pdb_00001dly; pdb_00001idr; pdb_00001mwb; pdb_00001ngk; pdb_00001rte; pdb_00001rtx; pdb_00001s56; pdb_00001s61; pdb_00001s69; pdb_00001s6a; pdb_00001uvx; pdb_00001uvy; pdb_00001ux8; pdb_00002gkm; pdb_00002gkn; pdb_00002gl3; pdb_00002gln; pdb_00002hz1; pdb_00002hz2; pdb_00002hz3; pdb_00002qrw; pdb_00003aq5; pdb_00003aq6; pdb_00003aq7; pdb_00003aq8; pdb_00003aq9; pdb_00005ab8
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