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PROSITE entry PS01213


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General information about the entry

Entry name [info] GLOBIN_FAM_2
Accession [info] PS01213
Entry type [info] PATTERN
Date [info] 01-NOV-1997 CREATED;
01-APR-2006 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00933

Name and characterization of the entry

Description [info] Protozoan/cyanobacterial globins signature.
Pattern [info] 
F-[LF]-x(4)-[GE]-G-[PAT]-x(2)-[YW]-x-[GSE]-[KRQAE]-x(1,5)-[LIVM]-x(3)-H.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 18 in 18 different sequences
Number of true positive hits 18 in 18 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 6
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 75.00 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] heme(?) at position 15
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 18 sequences 

TRHBN_MYCBO (P0A593), TRHBN_MYCPA (Q740T9), TRHBN_MYCSM (P0A594), 

TRHBN_MYCTO (P9WN24), TRHBN_MYCTU (P9WN25), TRHBN_NOSCO (Q00812), 
TRHBN_NOSSN (P52335), TRHBN_PARCA (P15160), TRHBN_SYNY3 (P73925), 
TRHBN_TETPY (P17724), TRHBN_TETTH (Q03459), TRHBO_BACSU (O31607), 
TRHBO_MYCBO (P0A596), TRHBO_MYCLE (Q9CC59), TRHBO_MYCTO (P9WN22), 
TRHBO_MYCTU (P9WN23), TRHN1_CHLMO (Q08753), TRHN2_CHLMO (P52334)
» more

UniProtKB/Swiss-Prot
False negative sequences		 6 sequences 

GLB31_LOTJA (P0DO64), GLB31_MEDTR (G7J2X4), GLB32_LOTJA (I3SAV1), 

GLB32_MEDTR (G7I4F4), GLB3_ARATH  (Q67XG0), TRHBP_CAMJE (Q0PB48)
» more

PDB
[Detailed view]		 28 PDB

1DLW; 1DLY; 1IDR; 1MWB; 1NGK; 1RTE; 1RTX; 1S56; 1S61; 1S69; 1S6A; 1UVX; 1UVY; 1UX8; 2GKM; 2GKN; 2GL3; 2GLN; 2HZ1; 2HZ2; 2HZ3; 2QRW; 3AQ5; 3AQ6; 3AQ7; 3AQ8; 3AQ9; 5AB8
» more