PROSITE entry PS01218

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General information about the entry

Entry name [info]	TATC
Accession [info]	PS01218
Entry type [info]	PATTERN
Date [info]	01-NOV-1997 CREATED; 01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00936

Name and characterization of the entry

Description [info]	TatC family signature.
Pattern [info]	Y-x(2)-[FL]-[LIVMAFNT]-[LIVMAFT]-x-[LVSI]-x(4)-[GASF]-x(2)-F-[EQ]- [LIVMFC]-P-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	35 in 35 different sequences
Number of true positive hits	35 in 35 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	15
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	70.00 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

35 sequences

TATCD_BACSU (P42252), TATCY_BACSU (O05523), TATC_AQUAE  (O67305),

TATC_ARATH  (Q9SJV5), TATC_AZOCH  (P54085), TATC_CAMJE  (Q9PHT8), 
TATC_CORK4  (C4LIK6), TATC_ECO57  (P69424), TATC_ECOL6  (Q8FBI6), 
TATC_ECOLI  (P69423), TATC_HAEIN  (P44560), TATC_HALH5  (Q9Z9P4), 
TATC_HALNC  (D0KWI6), TATC_HELPJ  (Q9ZM59), TATC_HELPY  (O25701), 
TATC_KORVE  (Q1IN69), TATC_LISIN  (Q92ES8), TATC_MAGMM  (A0L833), 
TATC_MAIZE  (C4IZX0), TATC_MYCBO  (P66896), TATC_MYCLE  (P54078), 
TATC_MYCTO  (P9WG96), TATC_MYCTU  (P9WG97), TATC_ORYSJ  (Q9AVE6), 
TATC_PEA(Q94G17), TATC_RICPR  (Q9ZCG6), TATC_SYNY3  (P54086), 
YCF43_CYACA (Q9TLS5), YCF43_GRATL (Q6B8S9), YCF43_GUITH (O78493), 
YCF43_NEOYE (Q1XDM3), YCF43_PORPU (P51264), YCF43_TRICV (P49538), 
YMF16_NEPOL (Q9TC94), YMF16_RECAM (O21266)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

15 sequences

TATCO_HALVD (D4GZD0), TATCT_HALVD (D4GZC9), TATC_AKKM8  (B2UN92),

TATC_BLASP  (D0J948), TATC_CARHZ  (Q3ADS0), TATC_CENSY  (A0RW14), 
TATC_DEHMV  (D2BJS8), TATC_DEIRA  (Q9RW63), TATC_DESAH  (C0QD59), 
TATC_FRACC  (Q2J9S4), TATC_METAR  (Q0W5V8), TATC_RHOCB  (D5AT98), 
TATC_ROTMD  (D2NT99), TATC_SYNC1  (Q3A8D5), TATC_XYLCX  (D1BTU8)

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PDB
[Detailed view]

3 PDB

4B4A; 4HTS; 4HTT