PROSITE entry PS01228
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General information about the entry
| Entry name [info] | COF_1 |
| Accession [info] | PS01228 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1997 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00944 |
Name and characterization of the entry
| Description [info] | Hypothetical cof family signature 1. |
| Pattern [info] |
[LIVFYAN]-[LIVMFA]-x(2)-D-[LIVMF]-[ND]-G-T-[LIV]-[LVY]-[STANLM]. |
Numerical results [info]
| Total number of hits | 97 in 97 different sequences |
| Number of true positive hits | 80 in 80 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 17 in 17 different sequences |
| Number of false negative sequences | 11 |
| Number of 'partial' sequences | 1 |
| Precision (true positives / (true positives + false positives)) | 82.47 % |
| Recall (true positives / (true positives + false negatives)) | 87.91 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
80 sequences
COF_CITK8 (A8AK07), COF_ECO24 (A7ZIK4), COF_ECO27 (B7UJR9), COF_ECO45 (B7MDA5), COF_ECO55 (B7L683), COF_ECO57 (Q8XE50), COF_ECO5E (B5Z3V4), COF_ECO7I (B7NJ48), COF_ECO81 (B7MQG2), COF_ECO8A (B7M3T9), COF_ECOBW (C4ZTK3), COF_ECODH (B1XFN4), COF_ECOHS (A7ZXA4), COF_ECOK1 (A1A8B5), COF_ECOL5 (Q0TKJ5), COF_ECOL6 (Q8FKA2), COF_ECOLI (P46891), COF_ECOLU (B7N900), COF_ECOSE (B6HZQ3), COF_ECOSM (B1LJK3), COF_ECOUT (Q1RF89), COF_ENT38 (A4W7B7), COF_ESCF3 (B7LMD3), COF_KLEP3 (B5Y0T3), COF_KLEP7 (A6T5I9), COF_SALA4 (B5EXJ7), COF_SALAR (A9MM14), COF_SALCH (Q57SA6), COF_SALDC (B5FKW1), COF_SALEP (B5QU47), COF_SALG2 (B5R6V8), COF_SALHS (B4T9F2), COF_SALNS (B4SWV0), COF_SALPA (Q5PFM4), COF_SALPB (A9MWC0), COF_SALPK (B5BD74), COF_SALSV (B4TMD5), COF_SALTI (Q8Z8U7), COF_SALTY (Q8ZRB6), COF_SERP5 (A8GAR8), COF_SHIB3 (B2U4Q1), COF_SHIBS (Q325F5), COF_SHIF8 (Q0T7D7), COF_SHIFL (Q83M49), COF_SHISS (Q3Z4V2), COF_YERE8 (A1JNL2), COF_YERP3 (A7FLB5), COF_YERPA (Q1C4L7), COF_YERPB (B2K6W6), COF_YERPE (Q7CK25), COF_YERPG (A9QZP3), COF_YERPN (Q1CL56), COF_YERPP (A4TPD3), COF_YERPS (Q66DS5), COF_YERPY (B1JHR2), GPMPP_PERMH (C0QRP9), Y003_HAEIN (P44447), Y028_BUCAI (P57140), Y029_BUCAP (Q8KA73), Y030_BUCBP (Q89B25), Y125_MYCGE (P47371), Y263_MYCGE (P47505), Y264_MYCPN (P75511), Y265_MYCGE (P47507), Y381_MYCPN (P75401), Y383_MYCPN (P75399), Y533_STRP6 (Q5XD45), Y597_HAEIN (P44771), Y732_MYCCT (P53661), YBEY_ARATH (Q8L5Z4), YBHA_ECOLI (P21829), YCSE_BACSU (P42962), YIDA_ECOL6 (P0A8Y6), YIDA_ECOLI (P0A8Y5), YIDA_SHIFL (P0A8Y7), YIGL_ECO57 (Q8X8L6), YIGL_ECOLI (P27848), YUPP_METHO (P43051), YWPJ_BACSU (P94592), YXEH_BACSU (P54947)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
11 sequences
BPPI_STRP6 (Q5XAQ1), COF_CROS8 (A7MFJ6), COF_ECOLC (B1IZE7), COF_SHIDS (Q32JB1), NTDB_BACSU (O07565), SUPH_ECOLI (P75792), Y427_MYCPN (P75360), YBJI_ECOLI (P75809), YITU_BACSU (P70947), YKRA_BACSU (Q45494), YWTE_BACSU (P96741)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
YPDA_GEOSE (P21878) |
| UniProtKB/Swiss-Prot False positive sequences |
17 sequences
GPH_HAEI8 (Q4QMY0), GPH_HAEIN (P44755), GPH_MANSM (Q65Q22), GPH_PASMU (Q9CKJ5), GPH_THIDA (Q3SGR5), LCAP_HUMAN (Q9UIQ6), LCAP_MOUSE (Q8C129), LCAP_RAT(P97629), MKS3_HUMAN (Q5HYA8), MPGP_SALCH (Q57N15), MPGP_SALPA (Q5PLI3), MPGP_SALTI (P65418), MPGP_SALTY (P65417), PNP_ALBFT (Q21YD1), PNP_METPP (A2SFM2), PNP_POLNA (A1VM56), PNP_POLSJ (Q127W8)» more |
| PDB [Detailed view] |
2 PDB
1NRW; 1RKQ |