 |
|
| Entry: PS01228 |
General information about the entry
| Entry name [info] | COF_1 |
| Accession [info] | PS01228 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1997 CREATED;
01-NOV-1997 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00944 |
Name and characterization of the entry
| Description [info] | Hypothetical cof family signature 1. |
| Pattern [info] |
[LIVFYAN]-[LIVMFA]-x(2)-D-[LIVMF]-[ND]-G-T-[LIV]-[LVY]-[STANLM]. |
Numerical results [info]
| Total number of hits | 96 in 96 different sequences |
| Number of true positive hits | 79 in 79 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 17 in 17 different sequences |
| Number of false negative sequences | 11 |
| Number of 'partial' sequences | 1 |
| Precision (true positives / (true positives + false positives)) | 82.29 % |
| Recall (true positives / (true positives + false negatives)) | 87.78 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
79 sequences
COF_CITK8 (A8AK07 ), COF_ECO24 (A7ZIK4 ), COF_ECO27 (B7UJR9 ), COF_ECO45 (B7MDA5 ), COF_ECO55 (B7L683 ), COF_ECO57 (Q8XE50 ), COF_ECO5E (B5Z3V4 ), COF_ECO7I (B7NJ48 ), COF_ECO81 (B7MQG2 ), COF_ECO8A (B7M3T9 ), COF_ECOBW (C4ZTK3 ), COF_ECODH (B1XFN4 ), COF_ECOHS (A7ZXA4 ), COF_ECOK1 (A1A8B5 ), COF_ECOL5 (Q0TKJ5 ), COF_ECOL6 (Q8FKA2 ), COF_ECOLI (P46891 ), COF_ECOLU (B7N900 ), COF_ECOSE (B6HZQ3 ), COF_ECOSM (B1LJK3 ), COF_ECOUT (Q1RF89 ), COF_ENT38 (A4W7B7 ), COF_ESCF3 (B7LMD3 ), COF_KLEP3 (B5Y0T3 ), COF_KLEP7 (A6T5I9 ), COF_SALA4 (B5EXJ7 ), COF_SALAR (A9MM14 ), COF_SALCH (Q57SA6 ), COF_SALDC (B5FKW1 ), COF_SALEP (B5QU47 ), COF_SALG2 (B5R6V8 ), COF_SALHS (B4T9F2 ), COF_SALNS (B4SWV0 ), COF_SALPA (Q5PFM4 ), COF_SALPB (A9MWC0 ), COF_SALPK (B5BD74 ), COF_SALSV (B4TMD5 ), COF_SALTI (Q8Z8U7 ), COF_SALTY (Q8ZRB6 ), COF_SERP5 (A8GAR8 ), COF_SHIB3 (B2U4Q1 ), COF_SHIBS (Q325F5 ), COF_SHIF8 (Q0T7D7 ), COF_SHIFL (Q83M49 ), COF_SHISS (Q3Z4V2 ), COF_YERE8 (A1JNL2 ), COF_YERP3 (A7FLB5 ), COF_YERPA (Q1C4L7 ), COF_YERPB (B2K6W6 ), COF_YERPE (Q7CK25 ), COF_YERPG (A9QZP3 ), COF_YERPN (Q1CL56 ), COF_YERPP (A4TPD3 ), COF_YERPS (Q66DS5 ), COF_YERPY (B1JHR2 ), GPMPP_PERMH (C0QRP9 ), Y003_HAEIN (P44447 ), Y028_BUCAI (P57140 ), Y029_BUCAP (Q8KA73 ), Y030_BUCBP (Q89B25 ), Y125_MYCGE (P47371 ), Y263_MYCGE (P47505 ), Y264_MYCPN (P75511 ), Y265_MYCGE (P47507 ), Y381_MYCPN (P75401 ), Y383_MYCPN (P75399 ), Y533_STRP6 (Q5XD45 ), Y597_HAEIN (P44771 ), Y732_MYCCT (P53661 ), YBHA_ECOLI (P21829 ), YCSE_BACSU (P42962 ), YIDA_ECOL6 (P0A8Y6 ), YIDA_ECOLI (P0A8Y5 ), YIDA_SHIFL (P0A8Y7 ), YIGL_ECO57 (Q8X8L6 ), YIGL_ECOLI (P27848 ), YUPP_MYCHO (P43051 ), YWPJ_BACSU (P94592 ), YXEH_BACSU (P54947 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
11 sequences
BPPI_STRP6 (Q5XAQ1 ), COF_CROS8 (A7MFJ6 ), COF_ECOLC (B1IZE7 ), COF_SHIDS (Q32JB1 ), NTDB_BACSU (O07565 ), SUPH_ECOLI (P75792 ), Y427_MYCPN (P75360 ), YBJI_ECOLI (P75809 ), YITU_BACSU (P70947 ), YKRA_BACSU (Q45494 ), YWTE_BACSU (P96741 )» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
YPDA_GEOSE (P21878 ) |
| UniProtKB/Swiss-Prot False positive sequences |
17 sequences
GPH_HAEI8 (Q4QMY0 ), GPH_HAEIN (P44755 ), GPH_MANSM (Q65Q22 ), GPH_PASMU (Q9CKJ5 ), GPH_THIDA (Q3SGR5 ), LCAP_HUMAN (Q9UIQ6 ), LCAP_MOUSE (Q8C129 ), LCAP_RAT (P97629 ), MKS3_HUMAN (Q5HYA8 ), MPGP_SALCH (Q57N15 ), MPGP_SALPA (Q5PLI3 ), MPGP_SALTI (P65418 ), MPGP_SALTY (P65417 ), PNP_METPP (A2SFM2 ), PNP_POLNA (A1VM56 ), PNP_POLSJ (Q127W8 ), PNP_RHOFT (Q21YD1 )» more |
| PDB [Detailed view] |
2 PDB
1NRW; 1RKQ |
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission