PROSITE entry PS01229
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General information about the entry
| Entry name [info] | COF_2 |
| Accession [info] | PS01229 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1997 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00944 |
Name and characterization of the entry
| Description [info] | Hypothetical cof family signature 2. |
| Pattern [info] |
[LIVMFC]-G-D-[GSANQ]-x-N-D-x(3)-[LIMFY]-x(2)-[AV]-x(2)-[GSCP]-x(2)- [LMP]-x(2)-[GAS]. |
Numerical results [info]
| Total number of hits | 142 in 142 different sequences |
| Number of true positive hits | 84 in 84 different sequences |
| Number of 'unknown' hits | 1 |
| Number of false positive hits | 57 in 57 different sequences |
| Number of false negative sequences | 7 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 59.57 % |
| Recall (true positives / (true positives + false negatives)) | 92.31 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
84 sequences
COF_CITK8 (A8AK07), COF_CROS8 (A7MFJ6), COF_ECO24 (A7ZIK4), COF_ECO27 (B7UJR9), COF_ECO45 (B7MDA5), COF_ECO55 (B7L683), COF_ECO57 (Q8XE50), COF_ECO5E (B5Z3V4), COF_ECO7I (B7NJ48), COF_ECO81 (B7MQG2), COF_ECO8A (B7M3T9), COF_ECOBW (C4ZTK3), COF_ECODH (B1XFN4), COF_ECOHS (A7ZXA4), COF_ECOK1 (A1A8B5), COF_ECOL5 (Q0TKJ5), COF_ECOL6 (Q8FKA2), COF_ECOLC (B1IZE7), COF_ECOLI (P46891), COF_ECOLU (B7N900), COF_ECOSE (B6HZQ3), COF_ECOSM (B1LJK3), COF_ECOUT (Q1RF89), COF_ENT38 (A4W7B7), COF_ESCF3 (B7LMD3), COF_KLEP3 (B5Y0T3), COF_KLEP7 (A6T5I9), COF_SALA4 (B5EXJ7), COF_SALAR (A9MM14), COF_SALCH (Q57SA6), COF_SALDC (B5FKW1), COF_SALEP (B5QU47), COF_SALG2 (B5R6V8), COF_SALHS (B4T9F2), COF_SALNS (B4SWV0), COF_SALPA (Q5PFM4), COF_SALPB (A9MWC0), COF_SALPK (B5BD74), COF_SALSV (B4TMD5), COF_SALTI (Q8Z8U7), COF_SALTY (Q8ZRB6), COF_SERP5 (A8GAR8), COF_SHIB3 (B2U4Q1), COF_SHIBS (Q325F5), COF_SHIDS (Q32JB1), COF_SHIF8 (Q0T7D7), COF_SHIFL (Q83M49), COF_SHISS (Q3Z4V2), COF_YERE8 (A1JNL2), COF_YERP3 (A7FLB5), COF_YERPA (Q1C4L7), COF_YERPB (B2K6W6), COF_YERPE (Q7CK25), COF_YERPG (A9QZP3), COF_YERPN (Q1CL56), COF_YERPP (A4TPD3), COF_YERPS (Q66DS5), COF_YERPY (B1JHR2), NTDB_BACSU (O07565), SUPH_ECOLI (P75792), Y003_HAEIN (P44447), Y125_MYCGE (P47371), Y263_MYCGE (P47505), Y264_MYCPN (P75511), Y265_MYCGE (P47507), Y381_MYCPN (P75401), Y383_MYCPN (P75399), Y533_STRP6 (Q5XD45), Y597_HAEIN (P44771), Y732_MYCCT (P53661), YBEY_ARATH (Q8L5Z4), YBHA_ECOLI (P21829), YBJI_ECOLI (P75809), YCSE_BACSU (P42962), YIDA_ECOL6 (P0A8Y6), YIDA_ECOLI (P0A8Y5), YIDA_SHIFL (P0A8Y7), YIGL_ECO57 (Q8X8L6), YIGL_ECOLI (P27848), YKRA_BACSU (Q45494), YPDA_GEOSE (P21878), YUPP_METHO (P43051), YWPJ_BACSU (P94592), YXEH_BACSU (P54947)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
7 sequences
BPPI_STRP6 (Q5XAQ1), Y028_BUCAI (P57140), Y029_BUCAP (Q8KA73), Y030_BUCBP (Q89B25), Y427_MYCPN (P75360), YITU_BACSU (P70947), YWTE_BACSU (P96741)» more |
| UniProtKB/Swiss-Prot 'Unknown' sequences |
1 sequence
SPFA_ASPFU (Q4WYP6) |
| UniProtKB/Swiss-Prot False positive sequences |
57 sequences
AT132_HUMAN (Q9NQ11), AT132_MOUSE (Q9CTG6), ATC4_SCHPO (O14072), ATC9_SCHPO (O74431), ATSY_SYNE7 (P37385), ATSY_SYNP6 (P07893), ATU2_SCHPO (O59666), CADA_LISMN (Q60048), CATP5_CAEEL (Q21286), COPA_ECO57 (Q8XD24), COPA_ECOLI (Q59385), COPA_ENTHA (P32113), COPA_SALTI (Q8Z8S4), COPA_SALTY (Q8ZR95), COPA_STAHJ (Q4L970), COPA_VIBCH (Q9KPZ7), COPA_YERPE (Q8ZCA7), CTA5_SCHPO (O14022), CTPB_MYCLE (P46840), CTPC_MYCBO (P0A503), CTPC_MYCLE (Q9CCL1), CTPC_MYCMM (B2HEM2), CTPC_MYCTO (P9WPT4), CTPC_MYCTU (P9WPT5), CTPD_MYCS2 (A0R3A7), CTPJ_MYCTO (P9WPT6), CTPJ_MYCTU (P9WPT7), FIXI_BRADU (Q59207), FIXI_RHILV (O33533), FIXI_RHIME (P18398), HMA2_ARATH (Q9SZW4), HMA2_ORYSJ (A3BF39), HMA3B_ARATH (P0CW78), HMA3_ORYSJ (Q8H384), HMA4_ARATH (O64474), HMCT_HELFE (Q9RQB4), HMCT_HELPJ (Q9ZL53), HMCT_HELPY (Q59465), KDPB_AGRFC (Q8U9D9), KDPB_CAUVC (Q9A7X7), KDPB_DEIRA (Q9RZP0), KDPB_PSEAE (P57698), KDPB_RHILO (Q98GX6), KDPB_RHIME (Q92XJ0), KDPB_THEAC (P57700), KDPB_THEVO (Q97BF6), KDPB_XANAC (Q8PPC9), KDPB_XANCP (Q8PCM1), PGP_AERPE (Q9YE03), PGP_METKA (Q8TYT9), SPF1_YEAST (P39986), Y290_HAEIN (P77868), YH2M_CAEEL (Q27533), YPK9_YEAST (Q12697), ZNTA_ECOLI (P37617), ZNTA_SHISS (Q3YW59), ZOSA_BACSU (O31688)» more |
| PDB [Detailed view] |
6 PDB
1NRW; 1RLM; 1RLO; 1RLT; 2HF2; 3GYG |