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PROSITE entry PS01229


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General information about the entry

Entry name [info] COF_2
Accession [info] PS01229
Entry type [info] PATTERN
Date [info] 01-NOV-1997 CREATED;
01-NOV-1997 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00944

Name and characterization of the entry

Description [info] Hypothetical cof family signature 2.
Pattern [info]
[LIVMFC]-G-D-[GSANQ]-x-N-D-x(3)-[LIMFY]-x(2)-[AV]-x(2)-[GSCP]-x(2)-
[LMP]-x(2)-[GAS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_03 which contains 571'609 sequence entries.


Total number of hits 142 in 142 different sequences
Number of true positive hits 84 in 84 different sequences
Number of 'unknown' hits 1
Number of false positive hits 57 in 57 different sequences
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 59.57 %
Recall (true positives / (true positives + false negatives)) 92.31 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
84 sequences

COF_CITK8   (A8AK07), COF_CROS8   (A7MFJ6), COF_ECO24   (A7ZIK4), 
COF_ECO27   (B7UJR9), COF_ECO45   (B7MDA5), COF_ECO55   (B7L683), 
COF_ECO57   (Q8XE50), COF_ECO5E   (B5Z3V4), COF_ECO7I   (B7NJ48), 
COF_ECO81   (B7MQG2), COF_ECO8A   (B7M3T9), COF_ECOBW   (C4ZTK3), 
COF_ECODH   (B1XFN4), COF_ECOHS   (A7ZXA4), COF_ECOK1   (A1A8B5), 
COF_ECOL5   (Q0TKJ5), COF_ECOL6   (Q8FKA2), COF_ECOLC   (B1IZE7), 
COF_ECOLI   (P46891), COF_ECOLU   (B7N900), COF_ECOSE   (B6HZQ3), 
COF_ECOSM   (B1LJK3), COF_ECOUT   (Q1RF89), COF_ENT38   (A4W7B7), 
COF_ESCF3   (B7LMD3), COF_KLEP3   (B5Y0T3), COF_KLEP7   (A6T5I9), 
COF_SALA4   (B5EXJ7), COF_SALAR   (A9MM14), COF_SALCH   (Q57SA6), 
COF_SALDC   (B5FKW1), COF_SALEP   (B5QU47), COF_SALG2   (B5R6V8), 
COF_SALHS   (B4T9F2), COF_SALNS   (B4SWV0), COF_SALPA   (Q5PFM4), 
COF_SALPB   (A9MWC0), COF_SALPK   (B5BD74), COF_SALSV   (B4TMD5), 
COF_SALTI   (Q8Z8U7), COF_SALTY   (Q8ZRB6), COF_SERP5   (A8GAR8), 
COF_SHIB3   (B2U4Q1), COF_SHIBS   (Q325F5), COF_SHIDS   (Q32JB1), 
COF_SHIF8   (Q0T7D7), COF_SHIFL   (Q83M49), COF_SHISS   (Q3Z4V2), 
COF_YERE8   (A1JNL2), COF_YERP3   (A7FLB5), COF_YERPA   (Q1C4L7), 
COF_YERPB   (B2K6W6), COF_YERPE   (Q7CK25), COF_YERPG   (A9QZP3), 
COF_YERPN   (Q1CL56), COF_YERPP   (A4TPD3), COF_YERPS   (Q66DS5), 
COF_YERPY   (B1JHR2), NTDB_BACSU  (O07565), SUPH_ECOLI  (P75792), 
Y003_HAEIN  (P44447), Y125_MYCGE  (P47371), Y263_MYCGE  (P47505), 
Y264_MYCPN  (P75511), Y265_MYCGE  (P47507), Y381_MYCPN  (P75401), 
Y383_MYCPN  (P75399), Y533_STRP6  (Q5XD45), Y597_HAEIN  (P44771), 
Y732_MYCCT  (P53661), YBEY_ARATH  (Q8L5Z4), YBHA_ECOLI  (P21829), 
YBJI_ECOLI  (P75809), YCSE_BACSU  (P42962), YIDA_ECOL6  (P0A8Y6), 
YIDA_ECOLI  (P0A8Y5), YIDA_SHIFL  (P0A8Y7), YIGL_ECO57  (Q8X8L6), 
YIGL_ECOLI  (P27848), YKRA_BACSU  (Q45494), YPDA_GEOSE  (P21878), 
YUPP_METHO  (P43051), YWPJ_BACSU  (P94592), YXEH_BACSU  (P54947)
» more

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

BPPI_STRP6  (Q5XAQ1), Y028_BUCAI  (P57140), Y029_BUCAP  (Q8KA73), 
Y030_BUCBP  (Q89B25), Y427_MYCPN  (P75360), YITU_BACSU  (P70947), 
YWTE_BACSU  (P96741)
» more

UniProtKB/Swiss-Prot
'Unknown' sequences
1 sequence

SPFA_ASPFU  (Q4WYP6)

		
UniProtKB/Swiss-Prot
False positive sequences
57 sequences

AT132_HUMAN (Q9NQ11), AT132_MOUSE (Q9CTG6), ATC4_SCHPO  (O14072), 
ATC9_SCHPO  (O74431), ATSY_SYNE7  (P37385), ATSY_SYNP6  (P07893), 
ATU2_SCHPO  (O59666), CADA_LISMN  (Q60048), CATP5_CAEEL (Q21286), 
COPA_ECO57  (Q8XD24), COPA_ECOLI  (Q59385), COPA_ENTHA  (P32113), 
COPA_SALTI  (Q8Z8S4), COPA_SALTY  (Q8ZR95), COPA_STAHJ  (Q4L970), 
COPA_VIBCH  (Q9KPZ7), COPA_YERPE  (Q8ZCA7), CTA5_SCHPO  (O14022), 
CTPB_MYCLE  (P46840), CTPC_MYCBO  (P0A503), CTPC_MYCLE  (Q9CCL1), 
CTPC_MYCMM  (B2HEM2), CTPC_MYCTO  (P9WPT4), CTPC_MYCTU  (P9WPT5), 
CTPD_MYCS2  (A0R3A7), CTPJ_MYCTO  (P9WPT6), CTPJ_MYCTU  (P9WPT7), 
FIXI_BRADU  (Q59207), FIXI_RHILV  (O33533), FIXI_RHIME  (P18398), 
HMA2_ARATH  (Q9SZW4), HMA2_ORYSJ  (A3BF39), HMA3B_ARATH (P0CW78), 
HMA3_ORYSJ  (Q8H384), HMA4_ARATH  (O64474), HMCT_HELFE  (Q9RQB4), 
HMCT_HELPJ  (Q9ZL53), HMCT_HELPY  (Q59465), KDPB_AGRFC  (Q8U9D9), 
KDPB_CAUVC  (Q9A7X7), KDPB_DEIRA  (Q9RZP0), KDPB_PSEAE  (P57698), 
KDPB_RHILO  (Q98GX6), KDPB_RHIME  (Q92XJ0), KDPB_THEAC  (P57700), 
KDPB_THEVO  (Q97BF6), KDPB_XANAC  (Q8PPC9), KDPB_XANCP  (Q8PCM1), 
PGP_AERPE   (Q9YE03), PGP_METKA   (Q8TYT9), SPF1_YEAST  (P39986), 
Y290_HAEIN  (P77868), YH2M_CAEEL  (Q27533), YPK9_YEAST  (Q12697), 
ZNTA_ECOLI  (P37617), ZNTA_SHISS  (Q3YW59), ZOSA_BACSU  (O31688)
» more

PDB
[Detailed view]
6 PDB

1NRW; 1RLM; 1RLO; 1RLT; 2HF2; 3GYG