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Entry: PS01249

General information about the entry

Entry name [info] HYPA
Accession [info] PS01249
Entry type [info] PATTERN
Date [info] 01-NOV-1997 CREATED;
01-APR-2006 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00962

Name and characterization of the entry

Description [info] Hydrogenases expression/synthesis hypA family signature.
Pattern [info] 
[GS]-x(4)-[LIVMT]-x(4)-[LIVMF]-x(2)-[CSAM]-[LMFY]-x(6)-[STC]-x(4,5)-
[PAC]-x-[LIVMF]-x-[LIVMF]-x(8)-C-x(1,2)-[CH].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 105 in 105 different sequences
Number of true positive hits 105 in 105 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 38
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 73.43 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 105 sequences 

HYBF_ECO57  (Q8XBW1    ), HYBF_ECOL6  (Q8FDM1    ), HYBF_ECOLI  (P0A703    ), 

HYBF_KLEPN  (Q9F0D4    ), HYBF_MORMO  (Q9ZHR1    ), HYBF_PROVU  (P20926    ), 
HYBF_SALTI  (P64422    ), HYBF_SALTY  (P64421    ), HYBF_SHIB3  (B2U195    ), 
HYBF_SHIFL  (P0A704    ), HYPA1_DESVH (Q729M2    ), HYPA1_SYNY3 (P74263    ), 
HYPA2_BRADU (Q45256    ), HYPA2_DESVH (Q729Q7    ), HYPA2_SYNY3 (P73269    ), 
HYPA_ACTSZ  (A6VPH7    ), HYPA_AERHH  (A0KL76    ), HYPA_AERS4  (A4SLV6    ), 
HYPA_AQUAE  (O67133    ), HYPA_ARCFU  (O28904    ), HYPA_AZOCH  (Q43948    ), 
HYPA_AZOSB  (A1KC59    ), HYPA_AZOVI  (P31879    ), HYPA_BEII9  (B2IJ38    ), 
HYPA_BRASO  (A4YNU5    ), HYPA_CAMJE  (Q9PHP0    ), HYPA_CHLAA  (A9WK98    ), 
HYPA_CHLAD  (B8G3M6    ), HYPA_CHLL2  (B3EEL6    ), HYPA_CHLP8  (B3QQ33    ), 
HYPA_CHLPB  (B3EL96    ), HYPA_CHLSY  (B9LLZ7    ), HYPA_CHLTE  (Q8KBI8    ), 
HYPA_CUPNH  (P31901    ), HYPA_DECAR  (Q478M5    ), HYPA_DEHM1  (Q3Z6L1    ), 
HYPA_DEHMB  (A5FPQ5    ), HYPA_DEHMC  (Q3ZYW6    ), HYPA_DEIRA  (Q9RYJ6    ), 
HYPA_DESAL  (B8FH08    ), HYPA_DESMR  (C4XS28    ), HYPA_DESOH  (A8ZZG8    ), 
HYPA_ECO57  (P0A701    ), HYPA_ECOL6  (Q8FEL9    ), HYPA_ECOLI  (P0A700    ), 
HYPA_GEODF  (B9M4A8    ), HYPA_GEOMG  (Q39QV5    ), HYPA_GEOSL  (Q74G73    ), 
HYPA_GEOSM  (C6E310    ), HYPA_GEOUR  (A5GFC7    ), HYPA_HELPJ  (P0A0U5    ), 
HYPA_HELPY  (P0A0U4    ), HYPA_IGNH4  (A8AAQ5    ), HYPA_KLEP3  (B5XV79    ), 
HYPA_KLEP7  (A6TCZ3    ), HYPA_LAWIP  (Q1MRS4    ), HYPA_LEGPA  (Q5X252    ), 
HYPA_LEGPC  (A5IEY2    ), HYPA_LEGPH  (Q5ZSP1    ), HYPA_LEGPL  (Q5WTX7    ), 
HYPA_METAC  (Q8TRN7    ), HYPA_METBF  (Q46BF1    ), HYPA_METI4  (B3DWG1    ), 
HYPA_METJA  (Q57667    ), HYPA_METKA  (Q8TV53    ), HYPA_METMA  (Q8PUL7    ), 
HYPA_METS3  (A5UJD5    ), HYPA_METST  (Q2NEZ5    ), HYPA_METTH  (O26876    ), 
HYPA_NITSB  (A6Q3N0    ), HYPA_NOSP7  (Q9EYH3    ), HYPA_NOSS1  (O30461    ), 
HYPA_PARDP  (A1B6P4    ), HYPA_PECAS  (Q6D7U0    ), HYPA_PELLD  (Q3B2W3    ), 
HYPA_PELPB  (B4SCQ5    ), HYPA_POLNA  (A1VNP5    ), HYPA_PROA2  (B4S9J3    ), 
HYPA_PSYIN  (A1SU80    ), HYPA_PYRAB  (Q9V148    ), HYPA_PYRFU  (Q8U357    ), 
HYPA_PYRHO  (O59267    ), HYPA_RHILV  (P28154    ), HYPA_RHOCA  (P26409    ), 
HYPA_RHOFT  (Q21R10    ), HYPA_RHOP5  (Q07S91    ), HYPA_RHOS1  (A3PLP3    ), 
HYPA_RHOS4  (Q3J0K8    ), HYPA_RHOSH  (Q9REM0    ), HYPA_RHOSK  (B9KKQ0    ), 
HYPA_RIPO1  (B7JUE3    ), HYPA_SALTI  (P64420    ), HYPA_SALTY  (P64419    ), 
HYPA_SHEB8  (A6WMK8    ), HYPA_SHIFL  (P0A702    ), HYPA_SYNAS  (Q2LVX4    ), 
HYPA_SYNE7  (Q31K36    ), HYPA_SYNP2  (Q8KX22    ), HYPA_SYNP6  (P94160    ), 
HYPA_THEGJ  (C5A3C3    ), HYPA_THEKO  (Q5JIH3    ), HYPA_THEON  (B6YT59    ), 
HYPA_THERP  (B9L1X1    ), HYPA_TRIEI  (Q117V9    ), HYPA_TRIV2  (Q3M482    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 38 sequences 

HYPA1_BRADU (Q9ANP8    ), HYPA_ACIF2  (B7JBG5    ), HYPA_ACIF5  (B5ERM3    ), 

HYPA_ALKEH  (Q0A726    ), HYPA_AZOC5  (A8IMT6    ), HYPA_CALS4  (Q8RDB2    ), 
HYPA_CROS5  (B1WV53    ), HYPA_DESHD  (B8G0K1    ), HYPA_DESHY  (Q24MA9    ), 
HYPA_FRAP2  (B0TWG4    ), HYPA_GEMAT  (C1A5E9    ), HYPA_HELHP  (Q7VI03    ), 
HYPA_META3  (A6USZ5    ), HYPA_METAR  (Q0W6P9    ), HYPA_METM5  (A4FZN7    ), 
HYPA_METM6  (A9A7S5    ), HYPA_METM7  (A6VIU0    ), HYPA_METMP  (Q6M0H0    ), 
HYPA_METSB  (B8ERW8    ), HYPA_METVS  (A6URT7    ), HYPA_MOOTA  (Q2RGG9    ), 
HYPA_NITMU  (Q2Y8F8    ), HYPA_PARD8  (A6LCY1    ), HYPA_RHOPA  (Q6NB57    ), 
HYPA_RHOPS  (Q13BX8    ), HYPA_RHOPT  (B3QGV7    ), HYPA_ROSS1  (A5URX3    ), 
HYPA_SHEB2  (B8E7F1    ), HYPA_SHEB5  (A3D3S2    ), HYPA_SHEB9  (A9KYZ4    ), 
HYPA_SHEHH  (B0TVE5    ), HYPA_SHEON  (Q8EF96    ), HYPA_SHESR  (Q0HUQ2    ), 
HYPA_STRAW  (Q820F2    ), HYPA_SYNJB  (Q2JIR9    ), HYPA_THESM  (C6A366    ), 
HYPA_WOLSU  (Q7MS42    ), HYPA_XANP2  (A7IHD3    )
» more

PDB
[Detailed view]		 9 PDB

2KDX; 3A43; 3A44; 5AUN; 5AUO; 5AUP; 5YXY; 5YY0; 6G81

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