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PROSITE entry PS01249


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General information about the entry

Entry name [info] HYPA
Accession [info] PS01249
Entry type [info] PATTERN
Date [info] 01-NOV-1997 CREATED;
01-APR-2006 DATA UPDATE;
27-MAR-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00962

Name and characterization of the entry

Description [info] Hydrogenases expression/synthesis hypA family signature.
Pattern [info]
[GS]-x(4)-[LIVMT]-x(4)-[LIVMF]-x(2)-[CSAM]-[LMFY]-x(6)-[STC]-x(4,5)-
[PAC]-x-[LIVMF]-x-[LIVMF]-x(8)-C-x(1,2)-[CH].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_02 which contains 571'282 sequence entries.


Total number of hits 105 in 105 different sequences
Number of true positive hits 105 in 105 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 38
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 73.43 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
105 sequences

HYBF_ECO57  (Q8XBW1), HYBF_ECOL6  (Q8FDM1), HYBF_ECOLI  (P0A703), 
HYBF_KLEPN  (Q9F0D4), HYBF_MORMO  (Q9ZHR1), HYBF_PROVU  (P20926), 
HYBF_SALTI  (P64422), HYBF_SALTY  (P64421), HYBF_SHIB3  (B2U195), 
HYBF_SHIFL  (P0A704), HYPA1_DESVH (Q729M2), HYPA1_SYNY3 (P74263), 
HYPA2_BRADU (Q45256), HYPA2_DESVH (Q729Q7), HYPA2_SYNY3 (P73269), 
HYPA_ACTSZ  (A6VPH7), HYPA_AERHH  (A0KL76), HYPA_AERS4  (A4SLV6), 
HYPA_ALBFT  (Q21R10), HYPA_AQUAE  (O67133), HYPA_ARCFU  (O28904), 
HYPA_AZOCH  (Q43948), HYPA_AZOSB  (A1KC59), HYPA_AZOVI  (P31879), 
HYPA_BEII9  (B2IJ38), HYPA_BRASO  (A4YNU5), HYPA_CAMJE  (Q9PHP0), 
HYPA_CERS1  (A3PLP3), HYPA_CERS4  (Q3J0K8), HYPA_CERSK  (B9KKQ0), 
HYPA_CERSP  (Q9REM0), HYPA_CHLAA  (A9WK98), HYPA_CHLAD  (B8G3M6), 
HYPA_CHLL2  (B3EEL6), HYPA_CHLL3  (Q3B2W3), HYPA_CHLP8  (B3QQ33), 
HYPA_CHLPB  (B3EL96), HYPA_CHLSY  (B9LLZ7), HYPA_CHLTE  (Q8KBI8), 
HYPA_CUPNH  (P31901), HYPA_DECAR  (Q478M5), HYPA_DEHM1  (Q3Z6L1), 
HYPA_DEHMB  (A5FPQ5), HYPA_DEHMC  (Q3ZYW6), HYPA_DEIRA  (Q9RYJ6), 
HYPA_DESAL  (B8FH08), HYPA_DESOH  (A8ZZG8), HYPA_ECO57  (P0A701), 
HYPA_ECOL6  (Q8FEL9), HYPA_ECOLI  (P0A700), HYPA_GEODF  (B9M4A8), 
HYPA_GEOMG  (Q39QV5), HYPA_GEOSL  (Q74G73), HYPA_GEOSM  (C6E310), 
HYPA_GEOUR  (A5GFC7), HYPA_HELPJ  (P0A0U5), HYPA_HELPY  (P0A0U4), 
HYPA_IGNH4  (A8AAQ5), HYPA_KLEP3  (B5XV79), HYPA_KLEP7  (A6TCZ3), 
HYPA_LAWIP  (Q1MRS4), HYPA_LEGPA  (Q5X252), HYPA_LEGPC  (A5IEY2), 
HYPA_LEGPH  (Q5ZSP1), HYPA_LEGPL  (Q5WTX7), HYPA_METAC  (Q8TRN7), 
HYPA_METBF  (Q46BF1), HYPA_METI4  (B3DWG1), HYPA_METJA  (Q57667), 
HYPA_METKA  (Q8TV53), HYPA_METMA  (Q8PUL7), HYPA_METS3  (A5UJD5), 
HYPA_METST  (Q2NEZ5), HYPA_METTH  (O26876), HYPA_NITSB  (A6Q3N0), 
HYPA_NOSP7  (Q9EYH3), HYPA_NOSS1  (O30461), HYPA_PARDP  (A1B6P4), 
HYPA_PECAS  (Q6D7U0), HYPA_PELPB  (B4SCQ5), HYPA_PICP2  (Q8KX22), 
HYPA_POLNA  (A1VNP5), HYPA_PROA2  (B4S9J3), HYPA_PSYIN  (A1SU80), 
HYPA_PYRAB  (Q9V148), HYPA_PYRFU  (Q8U357), HYPA_PYRHO  (O59267), 
HYPA_RHILV  (P28154), HYPA_RHOCA  (P26409), HYPA_RHOP5  (Q07S91), 
HYPA_RIPO1  (B7JUE3), HYPA_SALTI  (P64420), HYPA_SALTY  (P64419), 
HYPA_SHEB8  (A6WMK8), HYPA_SHIFL  (P0A702), HYPA_SOLM1  (C4XS28), 
HYPA_SYNAS  (Q2LVX4), HYPA_SYNE7  (Q31K36), HYPA_SYNP6  (P94160), 
HYPA_THEGJ  (C5A3C3), HYPA_THEKO  (Q5JIH3), HYPA_THEON  (B6YT59), 
HYPA_THERP  (B9L1X1), HYPA_TRIEI  (Q117V9), HYPA_TRIV2  (Q3M482)
» more

UniProtKB/Swiss-Prot
False negative sequences
38 sequences

HYPA1_BRADU (Q9ANP8), HYPA_ACIF2  (B7JBG5), HYPA_ACIF5  (B5ERM3), 
HYPA_ALKEH  (Q0A726), HYPA_AZOC5  (A8IMT6), HYPA_CALS4  (Q8RDB2), 
HYPA_CROS5  (B1WV53), HYPA_DESHD  (B8G0K1), HYPA_DESHY  (Q24MA9), 
HYPA_FRAP2  (B0TWG4), HYPA_GEMAT  (C1A5E9), HYPA_HELHP  (Q7VI03), 
HYPA_META3  (A6USZ5), HYPA_METAR  (Q0W6P9), HYPA_METM5  (A4FZN7), 
HYPA_METM6  (A9A7S5), HYPA_METM7  (A6VIU0), HYPA_METMP  (Q6M0H0), 
HYPA_METSB  (B8ERW8), HYPA_METVS  (A6URT7), HYPA_MOOTA  (Q2RGG9), 
HYPA_NITMU  (Q2Y8F8), HYPA_PARD8  (A6LCY1), HYPA_RHOPA  (Q6NB57), 
HYPA_RHOPS  (Q13BX8), HYPA_RHOPT  (B3QGV7), HYPA_ROSS1  (A5URX3), 
HYPA_SHEB2  (B8E7F1), HYPA_SHEB5  (A3D3S2), HYPA_SHEB9  (A9KYZ4), 
HYPA_SHEHH  (B0TVE5), HYPA_SHEON  (Q8EF96), HYPA_SHESR  (Q0HUQ2), 
HYPA_STRAW  (Q820F2), HYPA_SYNJB  (Q2JIR9), HYPA_THESM  (C6A366), 
HYPA_WOLSU  (Q7MS42), HYPA_XANP2  (A7IHD3)
» more

PDB
[Detailed view]
9 PDB

2KDX; 3A43; 3A44; 5AUN; 5AUO; 5AUP; 5YXY; 5YY0; 6G81