PROSITE entry PS01249
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General information about the entry
| Entry name [info] | HYPA |
| Accession [info] | PS01249 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1997 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00962 |
Name and characterization of the entry
| Description [info] | Hydrogenases expression/synthesis hypA family signature. |
| Pattern [info] |
[GS]-x(4)-[LIVMT]-x(4)-[LIVMF]-x(2)-[CSAM]-[LMFY]-x(6)-[STC]-x(4,5)- [PAC]-x-[LIVMF]-x-[LIVMF]-x(8)-C-x(1,2)-[CH]. |
Numerical results [info]
| Total number of hits | 105 in 105 different sequences |
| Number of true positive hits | 105 in 105 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 38 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 73.43 % |
Comments [info]
| Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
105 sequences
GHAA_SYNY3 (P73269), HYBF_ECO57 (Q8XBW1), HYBF_ECOL6 (Q8FDM1), HYBF_ECOLI (P0A703), HYBF_KLEPN (Q9F0D4), HYBF_MORMO (Q9ZHR1), HYBF_PROVU (P20926), HYBF_SALTI (P64422), HYBF_SALTY (P64421), HYBF_SHIB3 (B2U195), HYBF_SHIFL (P0A704), HYPA1_NITV2 (Q729M2), HYPA2_BRADU (Q45256), HYPA2_NITV2 (Q729Q7), HYPA_ACTSZ (A6VPH7), HYPA_AERHH (A0KL76), HYPA_AERS4 (A4SLV6), HYPA_ALBFT (Q21R10), HYPA_AQUAE (O67133), HYPA_ARCFU (O28904), HYPA_AZOCH (Q43948), HYPA_AZOSB (A1KC59), HYPA_AZOVI (P31879), HYPA_BEII9 (B2IJ38), HYPA_BRASO (A4YNU5), HYPA_CAMJE (Q9PHP0), HYPA_CERS1 (A3PLP3), HYPA_CERS4 (Q3J0K8), HYPA_CERSK (B9KKQ0), HYPA_CERSP (Q9REM0), HYPA_CHLAA (A9WK98), HYPA_CHLAD (B8G3M6), HYPA_CHLL2 (B3EEL6), HYPA_CHLL3 (Q3B2W3), HYPA_CHLP8 (B3QQ33), HYPA_CHLPB (B3EL96), HYPA_CHLSY (B9LLZ7), HYPA_CHLTE (Q8KBI8), HYPA_CUPNH (P31901), HYPA_DECAR (Q478M5), HYPA_DEHM1 (Q3Z6L1), HYPA_DEHMB (A5FPQ5), HYPA_DEHMC (Q3ZYW6), HYPA_DEIRA (Q9RYJ6), HYPA_DESAL (B8FH08), HYPA_DESOH (A8ZZG8), HYPA_ECO57 (P0A701), HYPA_ECOL6 (Q8FEL9), HYPA_ECOLI (P0A700), HYPA_GEODF (B9M4A8), HYPA_GEOMG (Q39QV5), HYPA_GEOSL (Q74G73), HYPA_GEOSM (C6E310), HYPA_GEOUR (A5GFC7), HYPA_HELPJ (P0A0U5), HYPA_HELPY (P0A0U4), HYPA_IGNH4 (A8AAQ5), HYPA_KLEP3 (B5XV79), HYPA_KLEP7 (A6TCZ3), HYPA_LAWIP (Q1MRS4), HYPA_LEGPA (Q5X252), HYPA_LEGPC (A5IEY2), HYPA_LEGPH (Q5ZSP1), HYPA_LEGPL (Q5WTX7), HYPA_METAC (Q8TRN7), HYPA_METBF (Q46BF1), HYPA_METI4 (B3DWG1), HYPA_METJA (Q57667), HYPA_METKA (Q8TV53), HYPA_METMA (Q8PUL7), HYPA_METS3 (A5UJD5), HYPA_METST (Q2NEZ5), HYPA_METTH (O26876), HYPA_NITSB (A6Q3N0), HYPA_NOSP7 (Q9EYH3), HYPA_NOSS1 (O30461), HYPA_PARDP (A1B6P4), HYPA_PECAS (Q6D7U0), HYPA_PELPB (B4SCQ5), HYPA_PICP2 (Q8KX22), HYPA_POLNA (A1VNP5), HYPA_PROA2 (B4S9J3), HYPA_PSYIN (A1SU80), HYPA_PYRAB (Q9V148), HYPA_PYRFU (Q8U357), HYPA_PYRHO (O59267), HYPA_RHILV (P28154), HYPA_RHOCA (P26409), HYPA_RHOP5 (Q07S91), HYPA_RIPO1 (B7JUE3), HYPA_SALTI (P64420), HYPA_SALTY (P64419), HYPA_SHEB8 (A6WMK8), HYPA_SHIFL (P0A702), HYPA_SOLM1 (C4XS28), HYPA_SYNAS (Q2LVX4), HYPA_SYNE7 (Q31K36), HYPA_SYNP6 (P94160), HYPA_SYNY3 (P74263), HYPA_THEGJ (C5A3C3), HYPA_THEKO (Q5JIH3), HYPA_THEON (B6YT59), HYPA_THERP (B9L1X1), HYPA_TRIEI (Q117V9), HYPA_TRIV2 (Q3M482)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
38 sequences
HYPA1_BRADU (Q9ANP8), HYPA_ACIF2 (B7JBG5), HYPA_ACIF5 (B5ERM3), HYPA_ALKEH (Q0A726), HYPA_AZOC5 (A8IMT6), HYPA_CALS4 (Q8RDB2), HYPA_CROS5 (B1WV53), HYPA_DESHD (B8G0K1), HYPA_DESHY (Q24MA9), HYPA_FRAP2 (B0TWG4), HYPA_GEMAT (C1A5E9), HYPA_HELHP (Q7VI03), HYPA_META3 (A6USZ5), HYPA_METAR (Q0W6P9), HYPA_METM5 (A4FZN7), HYPA_METM6 (A9A7S5), HYPA_METM7 (A6VIU0), HYPA_METMP (Q6M0H0), HYPA_METSB (B8ERW8), HYPA_METVS (A6URT7), HYPA_MOOTA (Q2RGG9), HYPA_NITMU (Q2Y8F8), HYPA_PARD8 (A6LCY1), HYPA_RHOPA (Q6NB57), HYPA_RHOPS (Q13BX8), HYPA_RHOPT (B3QGV7), HYPA_ROSS1 (A5URX3), HYPA_SHEB2 (B8E7F1), HYPA_SHEB5 (A3D3S2), HYPA_SHEB9 (A9KYZ4), HYPA_SHEHH (B0TVE5), HYPA_SHEON (Q8EF96), HYPA_SHESR (Q0HUQ2), HYPA_STRAW (Q820F2), HYPA_SYNJB (Q2JIR9), HYPA_THESM (C6A366), HYPA_WOLSU (Q7MS42), HYPA_XANP2 (A7IHD3)» more |
| PDB [Detailed view] |
9 PDB
2KDX; 3A43; 3A44; 5AUN; 5AUO; 5AUP; 5YXY; 5YY0; 6G81 |