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Entry: PS01249 |
Entry name [info] | HYPA |
Accession [info] | PS01249 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1997 CREATED;
01-APR-2006 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00962 |
Description [info] | Hydrogenases expression/synthesis hypA family signature. |
Pattern [info] |
[GS]-x(4)-[LIVMT]-x(4)-[LIVMF]-x(2)-[CSAM]-[LMFY]-x(6)-[STC]-x(4,5)- [PAC]-x-[LIVMF]-x-[LIVMF]-x(8)-C-x(1,2)-[CH]. |
Total number of hits | 105 in 105 different sequences |
Number of true positive hits | 105 in 105 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 38 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 73.43 % |
Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 2 |
UniProtKB/Swiss-Prot True positive sequences |
105 sequences
HYBF_ECO57 (Q8XBW1 ), HYBF_ECOL6 (Q8FDM1 ), HYBF_ECOLI (P0A703 ), HYBF_KLEPN (Q9F0D4 ), HYBF_MORMO (Q9ZHR1 ), HYBF_PROVU (P20926 ), HYBF_SALTI (P64422 ), HYBF_SALTY (P64421 ), HYBF_SHIB3 (B2U195 ), HYBF_SHIFL (P0A704 ), HYPA1_DESVH (Q729M2 ), HYPA1_SYNY3 (P74263 ), HYPA2_BRADU (Q45256 ), HYPA2_DESVH (Q729Q7 ), HYPA2_SYNY3 (P73269 ), HYPA_ACTSZ (A6VPH7 ), HYPA_AERHH (A0KL76 ), HYPA_AERS4 (A4SLV6 ), HYPA_AQUAE (O67133 ), HYPA_ARCFU (O28904 ), HYPA_AZOCH (Q43948 ), HYPA_AZOSB (A1KC59 ), HYPA_AZOVI (P31879 ), HYPA_BEII9 (B2IJ38 ), HYPA_BRASO (A4YNU5 ), HYPA_CAMJE (Q9PHP0 ), HYPA_CHLAA (A9WK98 ), HYPA_CHLAD (B8G3M6 ), HYPA_CHLL2 (B3EEL6 ), HYPA_CHLP8 (B3QQ33 ), HYPA_CHLPB (B3EL96 ), HYPA_CHLSY (B9LLZ7 ), HYPA_CHLTE (Q8KBI8 ), HYPA_CUPNH (P31901 ), HYPA_DECAR (Q478M5 ), HYPA_DEHM1 (Q3Z6L1 ), HYPA_DEHMB (A5FPQ5 ), HYPA_DEHMC (Q3ZYW6 ), HYPA_DEIRA (Q9RYJ6 ), HYPA_DESAL (B8FH08 ), HYPA_DESMR (C4XS28 ), HYPA_DESOH (A8ZZG8 ), HYPA_ECO57 (P0A701 ), HYPA_ECOL6 (Q8FEL9 ), HYPA_ECOLI (P0A700 ), HYPA_GEODF (B9M4A8 ), HYPA_GEOMG (Q39QV5 ), HYPA_GEOSL (Q74G73 ), HYPA_GEOSM (C6E310 ), HYPA_GEOUR (A5GFC7 ), HYPA_HELPJ (P0A0U5 ), HYPA_HELPY (P0A0U4 ), HYPA_IGNH4 (A8AAQ5 ), HYPA_KLEP3 (B5XV79 ), HYPA_KLEP7 (A6TCZ3 ), HYPA_LAWIP (Q1MRS4 ), HYPA_LEGPA (Q5X252 ), HYPA_LEGPC (A5IEY2 ), HYPA_LEGPH (Q5ZSP1 ), HYPA_LEGPL (Q5WTX7 ), HYPA_METAC (Q8TRN7 ), HYPA_METBF (Q46BF1 ), HYPA_METI4 (B3DWG1 ), HYPA_METJA (Q57667 ), HYPA_METKA (Q8TV53 ), HYPA_METMA (Q8PUL7 ), HYPA_METS3 (A5UJD5 ), HYPA_METST (Q2NEZ5 ), HYPA_METTH (O26876 ), HYPA_NITSB (A6Q3N0 ), HYPA_NOSP7 (Q9EYH3 ), HYPA_NOSS1 (O30461 ), HYPA_PARDP (A1B6P4 ), HYPA_PECAS (Q6D7U0 ), HYPA_PELLD (Q3B2W3 ), HYPA_PELPB (B4SCQ5 ), HYPA_POLNA (A1VNP5 ), HYPA_PROA2 (B4S9J3 ), HYPA_PSYIN (A1SU80 ), HYPA_PYRAB (Q9V148 ), HYPA_PYRFU (Q8U357 ), HYPA_PYRHO (O59267 ), HYPA_RHILV (P28154 ), HYPA_RHOCA (P26409 ), HYPA_RHOFT (Q21R10 ), HYPA_RHOP5 (Q07S91 ), HYPA_RHOS1 (A3PLP3 ), HYPA_RHOS4 (Q3J0K8 ), HYPA_RHOSH (Q9REM0 ), HYPA_RHOSK (B9KKQ0 ), HYPA_RIPO1 (B7JUE3 ), HYPA_SALTI (P64420 ), HYPA_SALTY (P64419 ), HYPA_SHEB8 (A6WMK8 ), HYPA_SHIFL (P0A702 ), HYPA_SYNAS (Q2LVX4 ), HYPA_SYNE7 (Q31K36 ), HYPA_SYNP2 (Q8KX22 ), HYPA_SYNP6 (P94160 ), HYPA_THEGJ (C5A3C3 ), HYPA_THEKO (Q5JIH3 ), HYPA_THEON (B6YT59 ), HYPA_THERP (B9L1X1 ), HYPA_TRIEI (Q117V9 ), HYPA_TRIV2 (Q3M482 )» more
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UniProtKB/Swiss-Prot False negative sequences |
38 sequences
HYPA1_BRADU (Q9ANP8 ), HYPA_ACIF2 (B7JBG5 ), HYPA_ACIF5 (B5ERM3 ), HYPA_ALKEH (Q0A726 ), HYPA_AZOC5 (A8IMT6 ), HYPA_CALS4 (Q8RDB2 ), HYPA_CROS5 (B1WV53 ), HYPA_DESHD (B8G0K1 ), HYPA_DESHY (Q24MA9 ), HYPA_FRAP2 (B0TWG4 ), HYPA_GEMAT (C1A5E9 ), HYPA_HELHP (Q7VI03 ), HYPA_META3 (A6USZ5 ), HYPA_METAR (Q0W6P9 ), HYPA_METM5 (A4FZN7 ), HYPA_METM6 (A9A7S5 ), HYPA_METM7 (A6VIU0 ), HYPA_METMP (Q6M0H0 ), HYPA_METSB (B8ERW8 ), HYPA_METVS (A6URT7 ), HYPA_MOOTA (Q2RGG9 ), HYPA_NITMU (Q2Y8F8 ), HYPA_PARD8 (A6LCY1 ), HYPA_RHOPA (Q6NB57 ), HYPA_RHOPS (Q13BX8 ), HYPA_RHOPT (B3QGV7 ), HYPA_ROSS1 (A5URX3 ), HYPA_SHEB2 (B8E7F1 ), HYPA_SHEB5 (A3D3S2 ), HYPA_SHEB9 (A9KYZ4 ), HYPA_SHEHH (B0TVE5 ), HYPA_SHEON (Q8EF96 ), HYPA_SHESR (Q0HUQ2 ), HYPA_STRAW (Q820F2 ), HYPA_SYNJB (Q2JIR9 ), HYPA_THESM (C6A366 ), HYPA_WOLSU (Q7MS42 ), HYPA_XANP2 (A7IHD3 )» more |
PDB [Detailed view] |
9 PDB
2KDX; 3A43; 3A44; 5AUN; 5AUO; 5AUP; 5YXY; 5YY0; 6G81 |