PROSITE entry PS01256

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General information about the entry

Entry name [info]	CULLIN_1
Accession [info]	PS01256
Entry type [info]	PATTERN
Date [info]	01-NOV-1997 CREATED; 01-APR-2006 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00967

Name and characterization of the entry

Description [info]	Cullin family signature.
Pattern [info]	[LIV]-[KL]-x(2)-[LIVM]-x(2)-L-[IL]-[DEQGVT]-[KRHNQ]-x-[YT]-[LIVM]-x-R- x(5,7)-[FYLV]-x-Y-x-[SAT].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	43 in 43 different sequences
Number of true positive hits	43 in 43 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	23
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	65.15 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info]	1
Version [info]	2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

43 sequences

CDC53_YEAST (Q12018), CUL1_ARATH  (Q94AH6), CUL1_CAEEL  (Q17389),

CUL1_DICDI  (O60999), CUL1_DROME  (Q24311), CUL1_HUMAN  (Q13616), 
CUL1_MOUSE  (Q9WTX6), CUL1_ORYSJ  (Q5ZC88), CUL1_PONAB  (Q5R4G6), 
CUL1_SCHPO  (O13790), CUL2_CAEEL  (Q17390), CUL2_DICDI  (Q9XZJ3), 
CUL2_HUMAN  (Q13617), CUL2_MOUSE  (Q9D4H8), CUL2_PONAB  (Q5RCF3), 
CUL3A_XENLA (Q6DE95), CUL3B_XENLA (Q6GPF3), CUL3_CAEEL  (Q17391), 
CUL3_DICDI  (Q54NZ5), CUL3_HUMAN  (Q13618), CUL3_MOUSE  (Q9JLV5), 
CUL3_RAT(B5DF89), CUL3_SCHPO  (Q09760), CUL3_XENTR  (A4IHP4), 
CUL3_YEAST  (P53202), CUL4A_HUMAN (Q13619), CUL4A_MOUSE (Q3TCH7), 
CUL4B_HUMAN (Q13620), CUL4B_MOUSE (A2A432), CUL4_ARATH  (Q8LGH4), 
CUL4_CAEEL  (Q17392), CUL4_DICDI  (Q54CS2), CUL4_SCHPO  (O14122), 
CUL5_CAEEL  (Q23639), CUL5_HUMAN  (Q93034), CUL5_MOUSE  (Q9D5V5), 
CUL5_PONAB  (Q5RB36), CUL5_RABIT  (Q29425), CUL5_RAT(Q9JJ31), 
CUL6_CAEEL  (Q21346), CUL7_MOUSE  (Q8VE73), CUL9_HUMAN  (Q8IWT3), 
CUL9_MOUSE  (Q80TT8)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

23 sequences

ANC2_CAEEL  (P34514), ANC2_HUMAN  (Q9UJX6), APC2_ARATH  (Q8H1U5),

APC2_DICDI  (Q551S9), APC2_SCHPO  (Q874R3), APC2_YEAST  (Q12440), 
CACL1_HUMAN (Q86Y37), CACL1_MOUSE (Q8R0X2), CACL1_RAT   (Q5XI53), 
CLL1_ARATH  (P0CH31), CLL2_ARATH  (Q9XIE9), CLL3_ARATH  (Q9XIE8), 
CLL4_ARATH  (Q9STG3), CLL5_ARATH  (Q9SZ75), CUL2_ARATH  (Q9SRZ0), 
CUL3A_ARATH (Q9ZVH4), CUL3B_ARATH (Q9C9L0), CUL5_DICDI  (Q54XF7), 
CUL7_HUMAN  (Q14999), CUL7_PONAB  (Q5RCJ3), CUL7_RAT(D3ZEF4), 
CUL8_YEAST  (P47050), YR337_MIMIV (Q5UQT0)

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PDB
[Detailed view]

46 PDB

1IUY; 1LDJ; 1LDK; 1U6G; 2DO7; 2HYE; 3DPL; 3DQV; 3O2P; 3O6B; 3RTR; 3TDU; 3TDZ; 4A0C; 4A0K; 4A0L; 4P5O; 5N4W; 5V89; 6R6H; 6R7F; 6R7I; 6R7N; 6TTU; 6V9I; 7B5L; 7B5M; 7B5N; 7B5R; 7B5S; 7OKQ; 7ONI; 7OPC; 7OPD; 7PLO; 7Z8R; 7Z8T; 7Z8V; 7ZBW; 7ZBZ; 8CDJ; 8CDK; 8OR0; 8OR2; 8OR3; 8OR4
» more