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| Entry: PS01326 |
General information about the entry
| Entry name [info] | DAP_EPIMERASE |
| Accession [info] | PS01326 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUL-1999 CREATED;
01-APR-2006 DATA UPDATE; 02-JUN-2021 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC01029 |
| Associated ProRule [info] | PRU10125 |
Name and characterization of the entry
| Description [info] | Diaminopimelate epimerase signature. |
| Pattern [info] |
N-x-[DN]-[GS]-[SENGFT]-x(4)-C-[GI]-N-[GA]-x-R. |
Numerical results [info]
| Total number of hits | 413 in 413 different sequences |
| Number of true positive hits | 413 in 413 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 10 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 97.64 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | active_site at position 7 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
413 sequences
DAPF1_NOSS1 (Q8YVD0 ), DAPF_ACAM1 (B0C312 ), DAPF_ACIAC (A1TKA9 ), DAPF_ACIAD (Q6F950 ), DAPF_ACIB3 (B7GY71 ), DAPF_ACIB5 (B7I5Y5 ), DAPF_ACIBC (B2HX82 ), DAPF_ACIBS (B0VT30 ), DAPF_ACIBT (A3M804 ), DAPF_ACIBY (B0VDN4 ), DAPF_ACIC1 (A0LUZ5 ), DAPF_ACICJ (A5G1F7 ), DAPF_ACIET (B9MFT0 ), DAPF_ACTP2 (A3N2H9 ), DAPF_ACTP7 (B3GYL3 ), DAPF_ACTPJ (B0BRC5 ), DAPF_ACTSZ (A6VQR8 ), DAPF_AERHH (A0KFI1 ), DAPF_AERS4 (A4SRW9 ), DAPF_AGARV (C4Z900 ), DAPF_AGRFC (Q8UC03 ), DAPF_AGRRK (B9JCL3 ), DAPF_AGRVS (B9JUB9 ), DAPF_ALCBS (Q0VM18 ), DAPF_ALIF1 (Q5E1W7 ), DAPF_ALISL (B6EP85 ), DAPF_ALKEH (Q0ACL9 ), DAPF_ALKMQ (A6TRX5 ), DAPF_ALKOO (A8MH77 ), DAPF_AQUAE (O67693 ), DAPF_ARATH (Q9LFG2 ), DAPF_ARCFU (O29511 ), DAPF_AROAE (Q5P2V2 ), DAPF_AZOPC (B6YS11 ), DAPF_AZOSB (A1K306 ), DAPF_AZOVD (C1DJ56 ), DAPF_BACAA (C3PDH0 ), DAPF_BACAC (C3LC72 ), DAPF_BACAH (A0RKC7 ), DAPF_BACAN (Q81XR2 ), DAPF_BACC0 (B7JDJ2 ), DAPF_BACC1 (Q72YE7 ), DAPF_BACC2 (B7IMV5 ), DAPF_BACC3 (C1EX98 ), DAPF_BACC4 (B7HBI0 ), DAPF_BACC7 (B7HUS8 ), DAPF_BACCN (A7GUE1 ), DAPF_BACCR (Q816D1 ), DAPF_BACCZ (Q632C7 ), DAPF_BACFR (Q64SY7 ), DAPF_BACHD (Q9K7F0 ), DAPF_BACHK (Q6HBW8 ), DAPF_BACLD (Q65FD6 ), DAPF_BACMK (A9VN01 ), DAPF_BACP2 (A8FH15 ), DAPF_BACSU (O32114 ), DAPF_BACTN (Q8AAB7 ), DAPF_BACV8 (A6L7E5 ), DAPF_BACVZ (A7Z8D3 ), DAPF_BARBK (A1UQV5 ), DAPF_BARHE (Q6G1L7 ), DAPF_BARQU (Q6FYC7 ), DAPF_BART1 (A9IZW1 ), DAPF_BAUCH (Q1LTX0 ), DAPF_BEII9 (B2IEM1 ), DAPF_BLOFL (Q7VRM5 ), DAPF_BLOPB (Q491Z7 ), DAPF_BRADU (Q89X45 ), DAPF_BRAHW (C0QZX1 ), DAPF_BRASB (A5E915 ), DAPF_BRASO (A4YKA5 ), DAPF_BRUA1 (B2S885 ), DAPF_BRUA2 (Q2YLR4 ), DAPF_BRUAB (Q57AW6 ), DAPF_BRUC2 (A9M8R8 ), DAPF_BRUMB (C0RFH7 ), DAPF_BRUME (Q8YJF0 ), DAPF_BRUO2 (A5VSQ7 ), DAPF_BRUSI (B0CIT6 ), DAPF_BRUSU (Q8FYF0 ), DAPF_BUCA5 (B8D8F1 ), DAPF_BUCAI (P57649 ), DAPF_BUCAP (Q8K901 ), DAPF_BUCAT (B8D8A8 ), DAPF_BUCBP (P59582 ), DAPF_BURCM (Q0BAY6 ), DAPF_BURM7 (A3MRQ6 ), DAPF_BURM9 (A2S862 ), DAPF_BURMA (Q62EZ3 ), DAPF_BURMS (A1V7L3 ), DAPF_BURP0 (A3NQ71 ), DAPF_BURP6 (A3N4H9 ), DAPF_BURPS (Q63YH7 ), DAPF_BURTA (Q2T269 ), DAPF_BURVG (A4JIQ6 ), DAPF_CALS4 (Q8R9S4 ), DAPF_CAMJ8 (A8FNJ1 ), DAPF_CAMJD (A7H5P5 ), DAPF_CAMJE (Q9PMD8 ), DAPF_CAMJJ (A1W1D0 ), DAPF_CAMJR (Q5HSQ5 ), DAPF_CAMLR (B9KED6 ), DAPF_CARHZ (Q3AC09 ), DAPF_CAUSK (B0T542 ), DAPF_CAUVC (Q9A280 ), DAPF_CAUVN (B8GVW2 ), DAPF_CELJU (B3PEI8 ), DAPF_CHESB (Q11CW3 ), DAPF_CHLMU (Q9PJW2 ), DAPF_CHLPN (Q9Z833 ), DAPF_CHLT2 (B0B802 ), DAPF_CHLTA (Q3KLS0 ), DAPF_CHLTB (B0BC67 ), DAPF_CHLTE (Q8KAX9 ), DAPF_CHLTR (O84437 ), DAPF_CHRSD (Q1QSV1 ), DAPF_CHRVO (Q7NV18 ), DAPF_CLAM3 (A5CSL3 ), DAPF_CLAMS (B0RHB0 ), DAPF_CLOAB (Q97FV2 ), DAPF_CLOPE (Q46185 ), DAPF_COLP3 (Q48AR8 ), DAPF_CORA7 (C3PGX6 ), DAPF_COREF (Q8FPE1 ), DAPF_CORGB (A4QEV1 ), DAPF_CORGL (Q8NP73 ), DAPF_COXB1 (B6J630 ), DAPF_COXB2 (B6J395 ), DAPF_COXBN (A9KGY8 ), DAPF_COXBR (A9N9J6 ), DAPF_COXBU (Q83AD4 ), DAPF_CROS8 (A7MQK2 ), DAPF_CUPMC (Q1LS37 ), DAPF_CUPNH (Q0KF42 ), DAPF_CUPPJ (Q476V3 ), DAPF_CUPTR (B2AGE5 ), DAPF_CYAP4 (B8HU20 ), DAPF_DECAR (Q47JN0 ), DAPF_DESAH (C0QAP3 ), DAPF_DESAP (B1I545 ), DAPF_DESDA (B8IZX7 ), DAPF_DESHD (B8FSD4 ), DAPF_DESRM (A4J568 ), DAPF_ECO24 (A7ZU14 ), DAPF_ECO27 (B7UNC6 ), DAPF_ECO45 (B7MH73 ), DAPF_ECO55 (B7L969 ), DAPF_ECO57 (P0A6K2 ), DAPF_ECO5E (B5YY56 ), DAPF_ECO7I (B7NTD3 ), DAPF_ECO81 (B7MR29 ), DAPF_ECO8A (B7M611 ), DAPF_ECOBW (C4ZZ73 ), DAPF_ECODH (B1XAH6 ), DAPF_ECOHS (A8A6R7 ), DAPF_ECOL5 (Q0TAR6 ), DAPF_ECOL6 (Q8FBN6 ), DAPF_ECOLC (B1IW95 ), DAPF_ECOLI (P0A6K1 ), DAPF_ECOLU (B7NFB1 ), DAPF_ECOSM (B1LLY0 ), DAPF_EDWI9 (C5BBD4 ), DAPF_ELUMP (B2KDH2 ), DAPF_ENT38 (A4WG08 ), DAPF_ENTFA (Q838I3 ), DAPF_ERWT9 (B2VI49 ), DAPF_ERYLH (Q2NBR6 ), DAPF_ESCF3 (B7LU47 ), DAPF_FLAPJ (A6GYX5 ), DAPF_GEOKA (Q5KVP4 ), DAPF_GEOSW (C5D729 ), DAPF_GEOTN (A4ISE8 ), DAPF_GLOC7 (B7KH06 ), DAPF_GLUOX (Q5FQZ4 ), DAPF_GRABC (Q0BS04 ), DAPF_HAEDU (Q7VPN0 ), DAPF_HAEI8 (Q4QME8 ), DAPF_HAEIE (A5UDX5 ), DAPF_HAEIG (A5UHQ4 ), DAPF_HAEIN (P44859 ), DAPF_HAEPS (B8F878 ), DAPF_HAES1 (Q0I572 ), DAPF_HAHCH (Q2SQ64 ), DAPF_HALHL (A1WWB3 ), DAPF_HALOH (B8CX90 ), DAPF_HELMI (B0TGR9 ), DAPF_HELP2 (B6JLE8 ), DAPF_HELPG (B5Z6T7 ), DAPF_HELPH (Q1CTW0 ), DAPF_HELPJ (Q9ZLR5 ), DAPF_HELPS (B2UTR2 ), DAPF_HELPY (O25290 ), DAPF_HERAR (A4G980 ), DAPF_HISS2 (B0UWU6 ), DAPF_HUNT2 (A3DK16 ), DAPF_HYDS0 (B4U9P0 ), DAPF_IDILO (Q5QUS6 ), DAPF_LACPL (Q88V90 ), DAPF_LACS1 (Q1WTU5 ), DAPF_LARHH (C1D8Q0 ), DAPF_LEIXX (Q6AE05 ), DAPF_LEPBA (B0SC36 ), DAPF_LEPBJ (Q04W97 ), DAPF_LEPBL (Q04X60 ), DAPF_LEPIC (Q72W63 ), DAPF_LEPIN (Q8F9V5 ), DAPF_LISIN (Q929Z7 ), DAPF_LISMC (C1KWW2 ), DAPF_LISMF (Q71Y02 ), DAPF_LISMH (B8DBR3 ), DAPF_LISMO (Q8Y5N9 ), DAPF_LISW6 (A0AKC4 ), DAPF_MAGMM (A0LE31 ), DAPF_MANSM (Q65RL9 ), DAPF_META3 (A6UTH4 ), DAPF_METAR (Q0W3B6 ), DAPF_METC4 (B7KQM2 ), DAPF_METEP (A9W6A5 ), DAPF_METJA (Q58519 ), DAPF_METKA (Q8TY71 ), DAPF_METM5 (A4FXV0 ), DAPF_METM6 (A9AB27 ), DAPF_METM7 (A6VFK8 ), DAPF_METMP (Q6LYS1 ), DAPF_METNO (B8I9H6 ), DAPF_METPB (B1ZDT1 ), DAPF_METPP (A2SKV9 ), DAPF_METS4 (B0UCI8 ), DAPF_METSB (B8EM14 ), DAPF_METTH (O27389 ), DAPF_MICAN (B0JJ58 ), DAPF_MOOTA (Q2RK34 ), DAPF_MYCA1 (A0QIQ8 ), DAPF_MYCA9 (B1MD00 ), DAPF_MYCBO (P63898 ), DAPF_MYCBP (A1KM64 ), DAPF_MYCBT (C1AFI5 ), DAPF_MYCGI (A4TCN3 ), DAPF_MYCLB (B8ZQU1 ), DAPF_MYCLE (P46814 ), DAPF_MYCMM (B2HL16 ), DAPF_MYCPA (Q73W21 ), DAPF_MYCS2 (A0QVY0 ), DAPF_MYCSJ (A3PYF9 ), DAPF_MYCSK (A1UEZ9 ), DAPF_MYCTA (A5U678 ), DAPF_MYCTO (P9WP18 ), DAPF_MYCTU (P9WP19 ), DAPF_MYCUA (A0PT80 ), DAPF_MYCVP (A1T7U8 ), DAPF_NATTJ (B2A663 ), DAPF_NEIMA (Q9JV69 ), DAPF_NEIMB (Q9K060 ), DAPF_NITEC (Q0AIP0 ), DAPF_NITEU (Q82U84 ), DAPF_NITHX (Q1QHJ3 ), DAPF_NITMU (Q2Y5Z0 ), DAPF_NITOC (Q3JEA2 ), DAPF_NITSB (A6Q160 ), DAPF_NOSP7 (B2J3A7 ), DAPF_OCEIH (Q8ENX2 ), DAPF_OCHA4 (A6WXE4 ), DAPF_OLICO (B6JAP3 ), DAPF_ORYSI (A2ZLS4 ), DAPF_ORYSJ (Q2QNF7 ), DAPF_PARD8 (A6L8U3 ), DAPF_PARP8 (B2JJY4 ), DAPF_PARPJ (B2T1P5 ), DAPF_PARXL (Q146W2 ), DAPF_PASMU (P57962 ), DAPF_PECAS (Q6CZG8 ), DAPF_PECCP (C6DHB7 ), DAPF_PELTS (A5D193 ), DAPF_PELUB (Q4FP10 ), DAPF_PHEZH (B4RCE2 ), DAPF_PHOLL (Q7MYN5 ), DAPF_PHOPR (Q6LLN5 ), DAPF_PROM1 (A2C243 ), DAPF_PROMH (B4F1X7 ), DAPF_PROMM (Q7V7M5 ), DAPF_PROMT (Q46L14 ), DAPF_PSE14 (Q48C02 ), DAPF_PSEA6 (Q15NG5 ), DAPF_PSEA7 (A6VE52 ), DAPF_PSEA8 (B7V5G9 ), DAPF_PSEAB (Q02E84 ), DAPF_PSEAE (Q51564 ), DAPF_PSEE4 (Q1I303 ), DAPF_PSEFL (O05322 ), DAPF_PSEMY (A4XNX4 ), DAPF_PSEPF (Q3K4R8 ), DAPF_PSEPG (B0KQ41 ), DAPF_PSEPK (Q88CF3 ), DAPF_PSEPW (B1J1W0 ), DAPF_PSESM (Q88B09 ), DAPF_PSET1 (Q3IEW3 ), DAPF_PSEU2 (Q500B6 ), DAPF_PSEU5 (A4VGW5 ), DAPF_PSYA2 (Q4FV85 ), DAPF_PSYCK (Q1QE99 ), DAPF_PSYIN (A1SQZ9 ), DAPF_PSYWF (A5WCB3 ), DAPF_RALPJ (B2UD25 ), DAPF_RALSO (Q8Y344 ), DAPF_RHIEC (Q2K386 ), DAPF_RHILO (Q98EB6 ), DAPF_RHILW (B5ZTH4 ), DAPF_RHIME (Q92L46 ), DAPF_RHOCS (B6IP82 ), DAPF_RHOE4 (C0ZYN8 ), DAPF_RHOJR (Q0S1N7 ), DAPF_RHOOB (C1B393 ), DAPF_RHOP2 (Q2J390 ), DAPF_RHOP5 (Q07UV4 ), DAPF_RHOPA (Q6ND59 ), DAPF_RHOPB (Q21CU6 ), DAPF_RHOPS (Q13DT7 ), DAPF_RHOPT (B3Q862 ), DAPF_RHOS4 (Q3IZB6 ), DAPF_RICAE (C3PNE1 ), DAPF_RICAH (A8GND7 ), DAPF_RICB8 (A8GWH4 ), DAPF_RICBR (Q1RIT1 ), DAPF_RICCK (A8EZ08 ), DAPF_RICCN (Q92I41 ), DAPF_RICFE (Q4ULS7 ), DAPF_RICM5 (A8F1I9 ), DAPF_RICPR (Q9ZDB7 ), DAPF_RICPU (C4K2A3 ), DAPF_RICRO (B0BXH3 ), DAPF_RICRS (A8GS10 ), DAPF_RICTY (Q68WW4 ), DAPF_RIPO1 (B7K1E7 ), DAPF_SACD2 (Q21P78 ), DAPF_SALA4 (B5EZS3 ), DAPF_SALDC (B5FNU5 ), DAPF_SALHS (B4TB37 ), DAPF_SALNS (B4SZ51 ), DAPF_SALPA (Q5PKM6 ), DAPF_SALPB (A9MY70 ), DAPF_SALPK (B5BIV6 ), DAPF_SALSV (B4TNV9 ), DAPF_SALTI (P0A1F3 ), DAPF_SALTY (P0A1F2 ), DAPF_SERP5 (A8G852 ), DAPF_SHEAM (A1SAP5 ), DAPF_SHEB2 (B8E690 ), DAPF_SHEB5 (A3D9Q0 ), DAPF_SHEB8 (A6WTF5 ), DAPF_SHEB9 (A9L5F5 ), DAPF_SHEDO (Q12S90 ), DAPF_SHEFN (Q088K8 ), DAPF_SHELP (A3Q9P7 ), DAPF_SHEON (Q8E9H5 ), DAPF_SHEPC (A4YBF7 ), DAPF_SHESA (A0KS65 ), DAPF_SHESH (A8G0W0 ), DAPF_SHESM (Q0HN95 ), DAPF_SHESR (Q0HQJ2 ), DAPF_SHESW (A1RPD2 ), DAPF_SHEWM (B1KQD0 ), DAPF_SHIB3 (B2TUW5 ), DAPF_SHIF8 (Q0SZ00 ), DAPF_SODGM (Q2NQF4 ), DAPF_SPHAL (Q1GPI7 ), DAPF_SPHWW (A5VAG4 ), DAPF_STRCO (O69969 ), DAPF_SYNE7 (Q31LW2 ), DAPF_SYNJA (Q2JUV6 ), DAPF_SYNJB (Q2JLR0 ), DAPF_SYNP2 (B1XP39 ), DAPF_SYNP6 (Q5N013 ), DAPF_SYNY3 (P74667 ), DAPF_TERTT (C5BUL6 ), DAPF_THEEB (Q8DGM2 ), DAPF_THEFY (Q47RR3 ), DAPF_THEMA (Q9X1L0 ), DAPF_THISH (B8GT89 ), DAPF_TOLAT (C4LDU8 ), DAPF_TRIEI (Q116P1 ), DAPF_VARPS (C5CND4 ), DAPF_VESOH (A5CWN5 ), DAPF_VIBA3 (B7VMD4 ), DAPF_VIBC3 (A5F4I6 ), DAPF_VIBCB (A7N0W0 ), DAPF_VIBCH (Q9KVL6 ), DAPF_VIBPA (Q87KJ4 ), DAPF_VIBVU (Q8DD81 ), DAPF_VIBVY (Q7MQC1 ), DAPF_WIGBR (Q8D2T4 ), DAPF_WOLTR (Q5GSB8 ), DAPF_WOLWR (C0R4N2 ), DAPF_XANAC (Q8PPQ1 ), DAPF_XANC5 (Q3BXU3 ), DAPF_XANC8 (Q4UYY2 ), DAPF_XANCB (B0RNK1 ), DAPF_XANCP (Q8P548 ), DAPF_XANOM (Q2NYV5 ), DAPF_XYLF2 (B2IA16 ), DAPF_XYLFA (Q9PD98 ), DAPF_XYLFM (B0U6U5 ), DAPF_XYLFT (Q87DI4 ), DAPF_YERE8 (A1JI90 ), DAPF_YERP3 (A7FD74 ), DAPF_YERPA (Q1CBM6 ), DAPF_YERPB (B2K072 ), DAPF_YERPE (P46357 ), DAPF_YERPG (A9R8K5 ), DAPF_YERPN (Q1CNH8 ), DAPF_YERPP (A4TRA3 ), DAPF_YERPS (Q66FZ5 ), DAPF_YERPY (B1JPE1 ), DAPF_ZYMMO (Q5NNL4 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
10 sequences
DAPF2_NOSS1 (P54897 ), DAPF_GEMAT (C1A8U3 ), DAPF_LEGPA (Q5X822 ), DAPF_LEGPC (A5IHM9 ), DAPF_LEGPH (Q5ZYK6 ), DAPF_LEGPL (Q5WZH5 ), DAPF_LEPCP (B1Y6S6 ), DAPF_METTP (A0B6C1 ), DAPF_RHOFT (Q21SV0 ), DAPF_RUTMC (A1AWJ5 )» more |
| PDB [Detailed view] |
19 PDB
1BWZ; 1GQZ; 2GKE; 2GKJ; 2OTN; 2Q9J; 3EJX; 3EKM; 3FVE; 4IJZ; 4IK0; 5H2G; 5H2Y; 5HA4; 5M47; 5YGU; 6VCK; 6VCL; 6VCM » more |
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