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Entry: PS01346

General information about the entry

Entry name [info] CLAUDIN
Accession [info] PS01346
Entry type [info] PATTERN
Date [info] 01-DEC-2001 CREATED;
01-DEC-2001 DATA UPDATE;
18-SEP-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC01045

Name and characterization of the entry

Description [info] Claudin family signature.
Pattern [info] 
[GN]-L-W-x(2)-C-x(7,9)-[STDENQH]-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_08 which contains 560'823 sequence entries.


Total number of hits 84 in 84 different sequences
Number of true positive hits 75 in 75 different sequences
Number of 'unknown' hits 0
Number of false positive hits 9 in 9 different sequences
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 89.29 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 75 sequences 

CLD10_BOVIN (Q5E9L0    ), CLD10_HUMAN (P78369    ), CLD10_MOUSE (Q9Z0S6    ), 

CLD10_PONAB (Q5R8E5    ), CLD11_BOVIN (Q3MHK4    ), CLD11_HUMAN (O75508    ), 
CLD11_MACFA (Q4R3L1    ), CLD11_MOUSE (Q60771    ), CLD11_PONAB (Q5REK8    ), 
CLD11_RAT   (Q99P82    ), CLD12_BOVIN (Q0IIL2    ), CLD12_HUMAN (P56749    ), 
CLD12_MOUSE (Q9ET43    ), CLD12_PONAB (Q5R9K1    ), CLD13_MOUSE (Q9Z0S4    ), 
CLD14_HUMAN (O95500    ), CLD14_MOUSE (Q9Z0S3    ), CLD15_BOVIN (Q2KIY2    ), 
CLD15_HUMAN (P56746    ), CLD15_MOUSE (Q9Z0S5    ), CLD15_RAT   (D3ZQJ0    ), 
CLD16_BOVIN (Q9XT98    ), CLD16_HUMAN (Q9Y5I7    ), CLD16_MOUSE (Q925N4    ), 
CLD16_RAT   (Q91Y55    ), CLD17_HUMAN (P56750    ), CLD17_MOUSE (Q8BXA6    ), 
CLD17_PIG   (C3VMW3    ), CLD18_BOVIN (Q0VCN0    ), CLD18_HUMAN (P56856    ), 
CLD18_MOUSE (P56857    ), CLD19_HUMAN (Q8N6F1    ), CLD19_MOUSE (Q9ET38    ), 
CLD19_RAT   (Q5QT56    ), CLD1_BOVIN  (Q6L708    ), CLD1_HUMAN  (O95832    ), 
CLD1_MOUSE  (O88551    ), CLD1_RAT    (P56745    ), CLD20_HUMAN (P56880    ), 
CLD22_HUMAN (Q8N7P3    ), CLD22_MOUSE (Q9D7U6    ), CLD23_HUMAN (Q96B33    ), 
CLD23_MOUSE (Q9D7D7    ), CLD24_HUMAN (A6NM45    ), CLD2_BOVIN  (Q765P1    ), 
CLD2_CANLF  (Q95KM6    ), CLD2_HUMAN  (P57739    ), CLD2_MOUSE  (O88552    ), 
CLD3_BOVIN  (Q765N9    ), CLD3_CANLF  (Q95KM5    ), CLD3_HUMAN  (O15551    ), 
CLD3_MOUSE  (Q9Z0G9    ), CLD3_RAT    (Q63400    ), CLD4_BOVIN  (Q6BBL6    ), 
CLD4_CHLAE  (O19005    ), CLD4_HUMAN  (O14493    ), CLD4_MOUSE  (O35054    ), 
CLD5_BOVIN  (Q2HJ22    ), CLD5_HUMAN  (O00501    ), CLD5_MOUSE  (O54942    ), 
CLD5_RAT    (Q9JKD6    ), CLD6_HUMAN  (P56747    ), CLD6_MOUSE  (Q9Z262    ), 
CLD7A_DANRE (Q6DHP1    ), CLD7B_DANRE (Q9YH92    ), CLD7_BOVIN  (Q3B7N4    ), 
CLD7_HUMAN  (O95471    ), CLD7_MOUSE  (Q9Z261    ), CLD7_RAT    (Q9Z1L1    ), 
CLD8_HUMAN  (P56748    ), CLD8_MOUSE  (Q9Z260    ), CLD9_HUMAN  (O95484    ), 
CLD9_MOUSE  (Q9Z0S7    ), CLDY_DANRE  (Q9YH91    ), CLDZ_DANRE  (Q9YH90    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 9 sequences 

ARI12_ARATH (Q84RQ9    ), CCG4_HUMAN  (Q9UBN1    ), CCG4_MOUSE  (Q9JJV4    ), 

CCG4_RAT    (Q8VHW9    ), CCGL_MOUSE  (Q9JJV3    ), CCGL_RAT    (Q8VHW1    ), 
CLC2_CAEEL  (Q11085    ), PUN1_YEAST  (Q06991    ), SLA4_TRIAB  (P81114    )
» more

PDB
[Detailed view]		 6 PDB

3X29; 4P79; 5B2G; 6AKE; 6AKF; 6AKG

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