PROSITE entry PS01346

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General information about the entry

Entry name [info]	CLAUDIN
Accession [info]	PS01346
Entry type [info]	PATTERN
Date [info]	01-DEC-2001 CREATED; 01-DEC-2001 DATA UPDATE; 13-SEP-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC01045

Name and characterization of the entry

Description [info]	Claudin family signature.
Pattern [info]	[GN]-L-W-x(2)-C-x(7,9)-[STDENQH]-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_04 which contains 570'157 sequence entries.

Total number of hits	85 in 85 different sequences
Number of true positive hits	76 in 76 different sequences
Number of 'unknown' hits	0
Number of false positive hits	9 in 9 different sequences
Number of false negative sequences	0
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	89.41 %
Recall (true positives / (true positives + false negatives))	100.00 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

76 sequences

CLD10_BOVIN (Q5E9L0), CLD10_HUMAN (P78369), CLD10_MOUSE (Q9Z0S6),

CLD10_PONAB (Q5R8E5), CLD11_BOVIN (Q3MHK4), CLD11_HUMAN (O75508), 
CLD11_MACFA (Q4R3L1), CLD11_MOUSE (Q60771), CLD11_PONAB (Q5REK8), 
CLD11_RAT   (Q99P82), CLD12_BOVIN (Q0IIL2), CLD12_HUMAN (P56749), 
CLD12_MOUSE (Q9ET43), CLD12_PONAB (Q5R9K1), CLD13_MOUSE (Q9Z0S4), 
CLD14_HUMAN (O95500), CLD14_MOUSE (Q9Z0S3), CLD15_BOVIN (Q2KIY2), 
CLD15_HUMAN (P56746), CLD15_MOUSE (Q9Z0S5), CLD15_RAT   (D3ZQJ0), 
CLD16_BOVIN (Q9XT98), CLD16_HUMAN (Q9Y5I7), CLD16_MOUSE (Q925N4), 
CLD16_RAT   (Q91Y55), CLD17_HUMAN (P56750), CLD17_MOUSE (Q8BXA6), 
CLD17_PIG   (C3VMW3), CLD18_BOVIN (Q0VCN0), CLD18_HUMAN (P56856), 
CLD18_MOUSE (P56857), CLD18_RAT   (Q5I0E5), CLD19_HUMAN (Q8N6F1), 
CLD19_MOUSE (Q9ET38), CLD19_RAT   (Q5QT56), CLD1_BOVIN  (Q6L708), 
CLD1_HUMAN  (O95832), CLD1_MOUSE  (O88551), CLD1_RAT(P56745), 
CLD20_HUMAN (P56880), CLD22_HUMAN (Q8N7P3), CLD22_MOUSE (Q9D7U6), 
CLD23_HUMAN (Q96B33), CLD23_MOUSE (Q9D7D7), CLD24_HUMAN (A6NM45), 
CLD2_BOVIN  (Q765P1), CLD2_CANLF  (Q95KM6), CLD2_HUMAN  (P57739), 
CLD2_MOUSE  (O88552), CLD3_BOVIN  (Q765N9), CLD3_CANLF  (Q95KM5), 
CLD3_HUMAN  (O15551), CLD3_MOUSE  (Q9Z0G9), CLD3_RAT(Q63400), 
CLD4_BOVIN  (Q6BBL6), CLD4_CHLAE  (O19005), CLD4_HUMAN  (O14493), 
CLD4_MOUSE  (O35054), CLD5_BOVIN  (Q2HJ22), CLD5_HUMAN  (O00501), 
CLD5_MOUSE  (O54942), CLD5_RAT(Q9JKD6), CLD6_HUMAN  (P56747), 
CLD6_MOUSE  (Q9Z262), CLD7A_DANRE (Q6DHP1), CLD7B_DANRE (Q9YH92), 
CLD7_BOVIN  (Q3B7N4), CLD7_HUMAN  (O95471), CLD7_MOUSE  (Q9Z261), 
CLD7_RAT(Q9Z1L1), CLD8_HUMAN  (P56748), CLD8_MOUSE  (Q9Z260), 
CLD9_HUMAN  (O95484), CLD9_MOUSE  (Q9Z0S7), CLDY_DANRE  (Q9YH91), 
CLDZ_DANRE  (Q9YH90)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False positive sequences

9 sequences

ARI12_ARATH (Q84RQ9), CCG4_HUMAN  (Q9UBN1), CCG4_MOUSE  (Q9JJV4),

CCG4_RAT(Q8VHW9), CCGL_MOUSE  (Q9JJV3), CCGL_RAT(Q8VHW1), 
CLC2_CAEEL  (Q11085), PUN1_YEAST  (Q06991), SLA4_TRIAB  (P81114)

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PDB
[Detailed view]

11 PDB

3X29; 4P79; 5B2G; 6AKE; 6AKF; 6AKG; 6OV2; 6OV3; 7KP4; 7TDM; 7TDN