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Entry: PS01360

General information about the entry

Entry name [info] ZF_MYND_1
Accession [info] PS01360
Entry type [info] PATTERN
Date [info] 01-JAN-2003 CREATED;
01-JAN-2003 DATA UPDATE;
05-JUN-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC50865

Name and characterization of the entry

Description [info] Zinc finger MYND-type signature.
Pattern [info] 
[CH]-x(2,4)-C-x(7,17)-C-x(0,2)-C-x(4)-[YFT]-C-x(3)-[CH]-x(6,9)-H-
x(3,4)-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_05 which contains 560'292 sequence entries.


Total number of hits 100 in 100 different sequences
Number of true positive hits 96 in 96 different sequences
Number of 'unknown' hits 0
Number of false positive hits 4 in 4 different sequences
Number of false negative sequences 8
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 96.00 %
Recall (true positives / (true positives + false negatives)) 92.31 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 96 sequences 

ANKY1_HUMAN (Q9P2S6    ), ANKY2_BOVIN (Q0VCS9    ), ANKY2_CHICK (Q5ZMD2    ), 

ANKY2_HUMAN (Q8IV38    ), ANKY2_MOUSE (Q3TPE9    ), ANMY1_MOUSE (Q8C0W1    ), 
ASHR1_ARATH (Q7XJS0    ), DEAF1_DROME (Q24180    ), DEAF1_HUMAN (O75398    ), 
DEAF1_MOUSE (Q9Z1T5    ), DEAF1_PANTR (O77562    ), DEAF1_RAT   (O88450    ), 
EGL9_CAEEL  (G5EBV0    ), EGLN1_HUMAN (Q9GZT9    ), EGLN1_MOUSE (Q91YE3    ), 
FB342_ARATH (Q9FK27    ), GACZ_DICDI  (Q55DW9    ), MSS51_HUMAN (Q4VC12    ), 
MSS51_MOUSE (Q9D5Z5    ), MSS51_RAT   (D3ZKV9    ), MTG16_CHICK (Q5F3B1    ), 
MTG16_HUMAN (O75081    ), MTG16_MOUSE (O54972    ), MTG8R_HUMAN (O43439    ), 
MTG8R_MOUSE (O70374    ), MTG8R_XENLA (Q9IAB2    ), MTG8_HUMAN  (Q06455    ), 
MTG8_MOUSE  (Q61909    ), MUB1_ASPCL  (A1CBG9    ), MUB1_ASPFC  (B0Y1D1    ), 
MUB1_ASPFN  (B8NKS1    ), MUB1_ASPFU  (Q4WVI6    ), MUB1_ASPNC  (A2RA63    ), 
MUB1_ASPOR  (Q2U685    ), MUB1_ASPTN  (Q0CW83    ), MUB1_EMENI  (O42631    ), 
MUB1_NEOFI  (A1DDX0    ), MUB1_SCHPO  (P87311    ), MUB1_YEAST  (Q03162    ), 
PDCD2_BOVIN (Q2YDC9    ), PDCD2_HUMAN (Q16342    ), PDCD2_MOUSE (P46718    ), 
PDCD2_RAT   (P47816    ), PKCB1_HUMAN (Q9ULU4    ), SET14_CAEEL (Q09415    ), 
SET6_SCHPO  (O94256    ), SMY2A_DANRE (Q5BJI7    ), SMY2A_XENLA (Q7ZXV5    ), 
SMY2B_DANRE (Q5RGL7    ), SMY2B_XENLA (Q6GN68    ), SMYD1_HUMAN (Q8NB12    ), 
SMYD1_MOUSE (P97443    ), SMYD2_BOVIN (Q0P585    ), SMYD2_CHICK (E1C5V0    ), 
SMYD2_HUMAN (Q9NRG4    ), SMYD2_MOUSE (Q8R5A0    ), SMYD2_PIG   (C3RZA1    ), 
SMYD2_RAT   (Q7M6Z3    ), SMYD3_HUMAN (Q9H7B4    ), SMYD3_MOUSE (Q9CWR2    ), 
SMYD4_CHICK (Q5F3V0    ), SMYD4_HUMAN (Q8IYR2    ), SMYD4_MOUSE (Q8BTK5    ), 
SMYD4_PONAB (Q5R5X9    ), TDRD1_DANRE (Q58EK5    ), TDRD1_HUMAN (Q9BXT4    ), 
TDRD1_MOUSE (Q99MV1    ), TDRD1_ORYLA (A9CPT4    ), UBP15_ARATH (Q9FPS9    ), 
UBP16_ARATH (Q9SB51    ), UBP17_ARATH (Q9FKP5    ), UBP18_ARATH (Q67XW5    ), 
UBP19_ARATH (Q9SJA1    ), UBP19_HUMAN (O94966    ), UBP19_MOUSE (Q3UJD6    ), 
UBP19_RAT   (Q6J1Y9    ), Y2140_DICDI (Q54DL6    ), Y2454_DICDI (Q54D67    ), 
Y3589_DICDI (Q557F7    ), Y3591_DICDI (Q557F6    ), Y4059_DICDI (Q54Q80    ), 
Y7331_DICDI (Q54ZX8    ), Y8495_DICDI (Q54IV4    ), YR331_MIMIV (Q5UQS2    ), 
ZMY10_DANRE (F1QN74    ), ZMY10_DROME (Q9VU41    ), ZMY10_HUMAN (O75800    ), 
ZMY10_MOUSE (Q99ML0    ), ZMY10_RAT   (Q6AXZ5    ), ZMY10_XENLA (Q5FWU8    ), 
ZMY11_HUMAN (Q15326    ), ZMY11_MOUSE (Q8R5C8    ), ZMY12_HUMAN (Q9H0C1    ), 
ZMY19_HUMAN (Q96E35    ), ZMY19_MOUSE (Q9CQG3    ), ZMY19_RAT   (Q7TSV3    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 8 sequences 

ATXR2_ARATH (Q5PP37    ), BIG_ARATH   (Q9SRU2    ), BIG_ORYSJ   (B9G2A8    ), 

SMYD5_CHICK (Q5ZIZ2    ), SMYD5_HUMAN (Q6GMV2    ), SMYD5_MOUSE (Q3TYX3    ), 
SMYD5_XENLA (Q6GPQ4    ), ZMY15_HUMAN (Q9H091    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 4 sequences 

FB76_ARATH  (Q9FYF9    ), SET5_CRYNB  (P0CR43    ), SET5_CRYNJ  (P0CR42    ), 

VE5_RHPV1   (P24834    )
» more

PDB
[Detailed view]		 51 PDB

2D8Q; 2DAN; 2DJ8; 2JW6; 2OD1; 2ODD; 3MEK; 3N71; 3OXF; 3OXG; 3OXL; 3PDN; 3QWP; 3QWV; 3QWW; 3RIB; 3RU0; 3S7B; 3S7D; 3S7F; 3S7J; 3TG4; 3TG5; 4A24; 4O6F; 4WUY; 4YND; 5ARF; 5ARG; 5CCL; 5CCM; 5EX0; 5EX3; 5HDA; 5HI7; 5HQ8; 5KJK; 5KJL; 5KJM; 5KJN; 5MQ4; 5V37; 5V3H; 5WCG; 5XXD; 5XXG; 5XXJ; 5YJO; 6CBX; 6CBY; 6MON
» more

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