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| Entry: PS50066 |
General information about the entry
| Entry name [info] | MADS_BOX_2 |
| Accession [info] | PS50066 |
| Entry type [info] | MATRIX |
| Date [info] |
01-NOV-1997 CREATED;
26-FEB-2020 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00302 |
| Associated ProRule [info] | PRU00251 |
Name and characterization of the entry
| Description [info] | MADS-box domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=61; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=56; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.4192000; R2=0.0140178; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=4160.3984375; R2=5.9630995; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=577; H_SCORE=7601; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=434; H_SCORE=6748; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: D=-20; I=-20; B1=-50; E1=-50; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='M'; M=-10,-18,-21,-26,-16, -5,-21, -2, 13, -4, 12, 45,-17,-20, 1, -2,-17, -9, 7,-21, -2, -8; /M: SY='G'; M= 6, -9,-25,-10,-14,-26, 44,-19,-30,-16,-24,-17, -2,-17,-16,-18, 3, -9,-21,-22,-26,-15; /M: SY='R'; M=-20,-10,-30,-10, 0,-20,-20, 0,-30, 30,-20,-10, 0,-20, 10, 70,-10,-10,-20,-20,-10, 0; /M: SY='G'; M= -5,-11,-29,-11,-14,-26, 36,-16,-32, -4,-25,-15, -2,-20,-12, 3, -4,-16,-21,-21,-23,-14; /M: SY='K'; M=-11, -1,-30, -1, 10,-30,-20, -9,-30, 47,-29,-10, 0,-11, 12, 32,-10,-10,-20,-20,-10, 10; /M: SY='I'; M= -8,-27,-26,-35,-26, -2,-36,-27, 40,-25, 16, 16,-20,-21,-16,-25,-16, -7, 28,-22, -3,-25; /M: SY='E'; M=-10, 4,-31, 10, 40,-33,-20, 1,-26, 12,-21,-13, -1, 1, 30, 4, -1,-10,-29,-26,-17, 35; /M: SY='I'; M=-10,-29,-27,-37,-27, 2,-36,-25, 41,-28, 25, 24,-22,-22,-18,-26,-22,-10, 25,-20, 0,-26; /M: SY='K'; M=-10, 0,-28, 1, 15,-29,-18, -7,-29, 36,-27,-12, 1,-10, 13, 27, -4, -8,-21,-23,-12, 13; /M: SY='R'; M=-18,-12,-29,-12, -3, -8,-22, -1,-23, 19,-17, -7, -5,-13, 2, 40,-12,-10,-17,-15, -1, -4; /M: SY='I'; M=-10,-30,-29,-39,-29, 1,-39,-29, 47,-30, 23, 20,-21,-21,-20,-29,-21,-10, 28,-20, 0,-29; /M: SY='E'; M=-11, 12,-29, 21, 48,-29,-19, -2,-29, 9,-19,-19, 1, -3, 15, 0, -1, -8,-27,-30,-18, 31; /M: SY='N'; M=-13, 43,-23, 33, 5,-25, -3, 7,-25, 0,-30,-23, 49,-17, 0, -3, 7, -3,-30,-40,-20, 3; /M: SY='K'; M= -2, 1,-23, 2, 5,-25,-14, -9,-21, 13,-22,-12, 2, -8, 6, 8, 4, 1,-15,-27,-14, 5; /M: SY='T'; M= -5, -5,-18,-12, -9,-12,-21,-14, -4, -7, -6, -4, -1,-15, -3, -1, 6, 21, -1,-27, -9, -7; /M: SY='N'; M= -8, 21,-21, 10, 1,-21, -6, 6,-22, 7,-28,-17, 35,-17, 2, 11, 10, 1,-24,-35,-16, 1; /M: SY='R'; M=-20,-10,-30,-10, 0,-20,-20, 0,-30, 30,-20,-10, 0,-20, 10, 70,-10,-10,-20,-20,-10, 0; /M: SY='Q'; M=-11, -2,-28, -3, 13,-31,-21, 15,-18, 5,-17, 0, -1,-13, 45, 6, -1, -7,-25,-19, -2, 28; /M: SY='V'; M= -1,-22,-11,-24,-26, -2,-27,-26, 23,-18, 5, 6,-20,-28,-26,-18, -6, 3, 40,-31,-11,-26; /M: SY='T'; M= 0, 0,-10,-10,-10,-10,-20,-20,-10,-10,-10,-10, 0,-10,-10,-10, 20, 50, 0,-30,-10,-10; /M: SY='F'; M=-20,-28,-22,-36,-28, 70,-30,-12, 0,-26, 8, 0,-20,-30,-34,-18,-20,-10, -2, 14, 40,-28; /M: SY='S'; M= 6, -3, 5, -7, -7,-18, -8,-15,-16,-13,-23,-16, 4,-15, -6,-14, 26, 17, -7,-38,-19, -7; /M: SY='K'; M=-10, 0,-30, 0, 10,-30,-20,-10,-30, 50,-30,-10, 0,-10, 10, 30,-10,-10,-20,-20,-10, 10; /M: SY='R'; M=-20,-10,-30,-10, 0,-20,-20, 0,-30, 30,-20,-10, 0,-20, 10, 70,-10,-10,-20,-20,-10, 0; /M: SY='R'; M=-17, -7,-30, -7, 3,-23,-20, -3,-30, 36,-23,-10, 0,-17, 10, 57,-10,-10,-20,-20,-10, 3; /M: SY='N'; M= 2, 13,-17, 1, -4,-13, -7, 4,-17, -5,-21,-14, 24,-16, -4, -6, 9, 4,-17,-30,-12, -4; /M: SY='G'; M= 0,-10,-29,-10,-19,-30, 68,-20,-39,-20,-30,-20, 0,-20,-19,-20, 1,-19,-29,-21,-30,-19; /M: SY='L'; M=-10,-30,-24,-34,-24, 6,-34,-24, 32,-30, 37, 20,-26,-26,-20,-24,-25,-10, 19,-20, 0,-24; /M: SY='L'; M=-13,-28,-21,-34,-24, 26,-29,-17, 18,-25, 27, 23,-24,-27,-21,-19,-23,-10, 10,-12, 8,-22; /M: SY='K'; M=-10, 0,-30, 0, 10,-30,-20,-10,-30, 50,-30,-10, 0,-10, 10, 30,-10,-10,-20,-20,-10, 10; /M: SY='K'; M=-10, 0,-30, 0, 10,-30,-20,-10,-30, 50,-30,-10, 0,-10, 10, 30,-10,-10,-20,-20,-10, 10; /M: SY='A'; M= 47,-10,-11,-20,-10,-20, -1,-19,-11, -8,-10,-10,-10,-10, -9,-16, 9, 0, -1,-20,-20,-10; /M: SY='Y'; M=-16, -4,-28, -7, -6, 0,-19, 20,-16, 5,-15, -5, 1,-21, 1, 4,-11,-11,-19, -5, 26, -4; /M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20, 0,-30, 10,-20,-20, 0, 0, 20, 0, 0,-10,-30,-30,-20, 40; /M: SY='L'; M=-10,-30,-22,-32,-22, 8,-32,-22, 25,-30, 45, 20,-28,-28,-20,-22,-28,-10, 14,-20, 0,-22; /M: SY='S'; M= 13, -2,-10, -5, -4,-17, -5,-14,-15,-10,-22,-16, 4,-11, -4,-12, 31, 23, -5,-35,-18, -4; /M: SY='V'; M= -2,-28,-13,-30,-28, 0,-30,-28, 28,-21, 14, 11,-27,-28,-27,-20,-11, 1, 41,-28, -8,-28; /M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20, 0,-20; /M: SY='C'; M= -8,-15, 90,-25,-25,-18,-28,-28,-25,-25,-18,-18,-15,-33,-25,-25, -3, 4, -8,-45,-25,-25; /M: SY='D'; M=-14, 32,-30, 46, 12,-37, 7, -4,-38, -4,-29,-26, 13,-12, 0,-11, 0,-12,-30,-34,-22, 6; /M: SY='A'; M= 34,-10, -1,-18,-11,-18, -6,-20,-10,-12,-12,-11, -9,-13,-11,-19, 12, 6, 1,-26,-19,-11; /M: SY='E'; M=-11, 10,-29, 15, 37,-30,-18, -1,-29, 17,-23,-16, 4, -5, 19, 9, -1, -8,-27,-28,-16, 28; /M: SY='V'; M= -3,-30,-16,-33,-30, 0,-33,-30, 36,-23, 13, 13,-27,-27,-27,-23,-13, -3, 44,-27, -7,-30; /M: SY='A'; M= 20,-11, -8,-17,-11,-14, -4,-16, -8,-14, -6, -3, -8,-16, -9,-17, 8, 2, -2,-27,-16,-10; /M: SY='L'; M= -7,-30,-18,-31,-24, 6,-31,-24, 26,-27, 37, 17,-29,-29,-23,-21,-24, -7, 23,-23, -3,-24; /M: SY='I'; M= -9,-30,-24,-36,-27, 3,-36,-27, 39,-29, 27, 19,-24,-24,-21,-26,-21, -9, 27,-21, -1,-27; /M: SY='I'; M= -6,-28,-21,-35,-28, 0,-33,-25, 37,-23, 17, 23,-24,-24,-20,-23,-17, -6, 34,-24, -4,-27; /M: SY='F'; M=-11,-29,-19,-36,-27, 46,-29,-22, 11,-28, 17, 6,-22,-28,-32,-21,-19, -8, 10, -4, 14,-27; /M: SY='S'; M= 13, 0,-12, -2, -3,-21, 5,-11,-21,-10,-28,-19, 9,-11, -3,-11, 33, 14,-11,-36,-21, -3; /M: SY='S'; M= -2, 7,-20, 6, 11,-23, -7, 0,-23, -3,-27,-18, 13, -1, 3, -6, 17, 5,-21,-35,-18, 6; /M: SY='T'; M= -2, 3,-17, -4, -3,-18,-11, -9,-19, 3,-20,-13, 9,-13, 0, 10, 13, 17,-12,-30,-14, -2; /M: SY='G'; M= -4, 2,-28, -1,-13,-27, 45,-10,-34,-13,-28,-19, 12,-20,-13,-11, 1,-15,-29,-25,-25,-14; /M: SY='K'; M=-11, -7,-27, -7, 2,-20,-22, -4,-20, 27,-13, -4, -5,-15, 4, 23,-12, -7,-14,-21, -7, 2; /M: SY='L'; M= -8,-28,-18,-30,-23, 11,-29,-19, 20,-24, 32, 19,-28,-29,-21,-19,-22, -7, 18,-19, 2,-22; /M: SY='Y'; M=-20,-16,-28,-18,-16, 22,-27, 37, -8,-14, -4, 1,-11,-27, -9, -9,-17,-13,-14, 6, 50,-16; /M: SY='E'; M= -8, 12,-25, 17, 32,-27,-18, 0,-26, 3,-19,-17, 3, -5, 12, -3, 4, 4,-22,-30,-15, 22; /M: SY='F'; M=-19,-26,-24,-31,-25, 55,-30, -3, 1,-22, 8, 1,-21,-30,-26,-16,-21,-10, -4, 17, 49,-25; /M: SY='A'; M= 19, -8, -2,-14, -9,-16, -8,-15,-11,-13,-14,-11, -4,-14, -9,-16, 16, 11, -3,-30,-17, -9; /M: SY='S'; M= 4, 3, -8, -3, -5,-17, -5,-12,-18,-10,-23,-17, 10,-12, -5,-10, 28, 26, -9,-36,-17, -5; /M: SY='P'; M= -8, -7,-28, -4, -2,-22,-17,-12,-17, -5,-23,-15, -5, 31, -7, -8, 0, 1,-17,-29,-18, -7; /M: SY='N'; M= -4, 10,-23, 11, 3,-27, 4, -8,-29, 7,-29,-19, 12,-12, 0, 0, 10, 0,-21,-31,-19, 2; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 209 in 209 different sequences |
| Number of true positive hits | 209 in 209 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | K_Hofmann |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | DOMAIN |
| Feature description [info] | MADS-box |
| Version [info] | 6 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
209 sequences
1AP1_BRAOT (Q96355 ), 2AP1_BRAOT (Q96356 ), 3AP1_BRAOL (Q39371 ), AG103_ARATH (Q9LSB2 ), AG104_ARATH (Q9LM46 ), AG11C_VITVI (F6I457 ), AG11S_VITVI (A0A217EJJ0), AGL11_ARATH (Q38836 ), AGL12_ARATH (Q38841 ), AGL13_ARATH (Q38837 ), AGL14_ARATH (Q38838 ), AGL15_ARATH (Q38847 ), AGL15_BRANA (Q39295 ), AGL16_ARATH (A2RVQ5 ), AGL17_ARATH (Q38840 ), AGL18_ARATH (Q9M2K8 ), AGL19_ARATH (O82743 ), AGL1_ARATH (P29381 ), AGL21_ARATH (Q9SZJ6 ), AGL23_ARATH (O80807 ), AGL24_ARATH (O82794 ), AGL27_ARATH (Q9AT76 ), AGL28_ARATH (Q9LMM8 ), AGL29_ARATH (O64703 ), AGL30_ARATH (Q1PFA4 ), AGL31_ARATH (Q9FPN7 ), AGL36_ARATH (Q7XJK6 ), AGL3_ARATH (P29383 ), AGL42_ARATH (Q9FIS1 ), AGL49_ARATH (Q9ZUI9 ), AGL53_ARATH (Q7X9N2 ), AGL5_ARATH (P29385 ), AGL61_ARATH (Q4PSU4 ), AGL62_ARATH (Q9FKK2 ), AGL63_ARATH (Q9SA07 ), AGL65_ARATH (Q7X9I0 ), AGL66_ARATH (Q1PFC2 ), AGL6_ARATH (P29386 ), AGL70_ARATH (Q9LSR7 ), AGL71_ARATH (Q9LT93 ), AGL72_ARATH (Q9FLH5 ), AGL75_ARATH (Q9FLL0 ), AGL80_ARATH (Q9FJK3 ), AGL81_ARATH (Q9FIX0 ), AGL82_ARATH (Q9FIM0 ), AGL86_ARATH (Q9C6V3 ), AGL8_ARATH (Q38876 ), AGL8_SINAL (Q41274 ), AGL8_SOLCO (O22328 ), AGL8_SOLLC (Q40170 ), AGL8_SOLTU (Q42429 ), AGL90_ARATH (Q7XJK5 ), AGL92_ARATH (Q9C6V4 ), AGL93_ARATH (Q7X9H9 ), AGL97_ARATH (Q9C633 ), AGL9_ARADE (Q38694 ), AGL9_PETHY (Q03489 ), AGL9_SINAL (O04067 ), AGL9_SOLLC (Q42464 ), AG_ARATH (P17839 ), AG_BRANA (Q01540 ), AG_PANGI (Q40872 ), AG_PETHY (Q40885 ), AG_SOLLC (Q40168 ), AG_TOBAC (Q43585 ), ANR1_ARATH (Q9SI38 ), AP1A_BRAOA (B4YPW6 ), AP1A_BRAOB (Q8GTF5 ), AP1C_BRAOA (B4YPV4 ), AP1C_BRAOB (Q8GTF4 ), AP1_ARALL (D7KWY6 ), AP1_ARATH (P35631 ), AP1_BRARP (P0DI14 ), AP1_CITSI (A2IB53 ), AP1_SINAL (Q41276 ), AP1_VITVI (Q6E6S7 ), AP32_ASAEU (Q9LLA7 ), AP3_ARATH (P35632 ), AP3_VITVI (E0CPH4 ), ARGR1_YEAST (P07249 ), CALA_BRAOB (Q6R4R9 ), CALB_BRAOB (Q6R4R8 ), CALC_BRAOB (Q6R4R7 ), CALD_BRAOB (Q6R4R6 ), CAL_ARALL (D7KQR8 ), CAL_ARATH (Q39081 ), CAL_BRAOT (Q39375 ), CAL_BRARC (Q6R4S6 ), CAL_BRARP (Q9SBK9 ), CAL_BRARR (Q6R4S3 ), CMB1_DIACA (Q39685 ), CMB2_DIACA (Q42498 ), DEF21_ANTMA (Q8RVL4 ), DEFA_ANTMA (P23706 ), EJ2_SOLLC (Q7Y040 ), FBP1_PETHY (Q03488 ), FBP24_PETHY (Q9ATE5 ), FLC_ARATH (Q9S7Q7 ), FULL_VITVI (D7SMN6 ), GGM13_GNEGN (Q9XGJ4 ), GLOB_ANTMA (Q03378 ), GLOB_TOBAC (Q03416 ), J2_SOLLC (K4DEK0 ), JOIN_SOLLC (Q9FUY6 ), M17_MAIZE (Q8VWM8 ), MAD13_ORYSJ (Q2QW53 ), MAD14_ORYSI (P0C5B1 ), MAD14_ORYSJ (Q10CQ1 ), MAD15_ORYSJ (Q6Q9I2 ), MAD16_ORYSJ (Q944S9 ), MAD17_ORYSJ (Q7XUN2 ), MAD18_ORYSI (A2YNI2 ), MAD18_ORYSJ (Q0D4T4 ), MAD20_ORYSJ (Q2QQA3 ), MAD21_ORYSJ (Q8RU31 ), MAD22_ORYSJ (Q9XJ66 ), MAD23_ORYSJ (Q6VAM4 ), MAD25_ORYSJ (Q84NC5 ), MAD26_ORYSI (A2YQK9 ), MAD26_ORYSJ (Q0J8G8 ), MAD27_ORYSJ (Q6EP49 ), MAD29_ORYSJ (Q6H711 ), MAD30_ORYSJ (Q655V4 ), MAD31_ORYSJ (Q84NC2 ), MAD32_ORYSJ (Q8S151 ), MAD33_ORYSJ (Q2QW55 ), MAD34_ORYSJ (Q6Q9H6 ), MAD47_ORYSJ (Q5K4R0 ), MAD50_ORYSJ (Q9XJ60 ), MAD51_ORYSJ (Q9XJ61 ), MAD55_ORYSJ (Q69TG5 ), MAD56_ORYSI (A2Z9Q7 ), MAD56_ORYSJ (P0C5B2 ), MAD57_ORYSJ (Q6Z6W2 ), MAD58_ORYSJ (Q2V0P1 ), MADS1_ORYSI (A2XDY1 ), MADS1_ORYSJ (Q10PZ9 ), MADS1_PETHY (Q07472 ), MADS1_VITVI (Q93XH4 ), MADS2_ORYSJ (Q40702 ), MADS2_PETHY (Q07474 ), MADS2_VITVI (Q8LLR2 ), MADS3_ORYSJ (Q40704 ), MADS3_VITVI (Q8LLR1 ), MADS4_ORYSJ (Q40703 ), MADS4_SOLLC (K4BND8 ), MADS4_VITVI (Q8LLR0 ), MADS5_ORYSI (A2Y9P0 ), MADS5_ORYSJ (Q0DEB8 ), MADS6_ORYSJ (Q6EU39 ), MADS7_ORYSI (P0C5B0 ), MADS7_ORYSJ (Q0J466 ), MADS8_ORYSJ (Q9SAR1 ), MADS9_VITVI (Q0HA25 ), MAF5_ARATH (Q683D7 ), MBX1_SCHPO (O42954 ), MCM1_CANAL (Q5AFP3 ), MCM1_YEAST (P11746 ), MEF2A_BOVIN (A2VDZ3 ), MEF2A_CHICK (Q9W6U8 ), MEF2A_HUMAN (Q02078 ), MEF2A_MOUSE (Q60929 ), MEF2A_PIG (A2ICN5 ), MEF2A_PONAB (Q5REW7 ), MEF2A_RAT (Q2MJT0 ), MEF2A_XENLA (Q03414 ), MEF2B_HUMAN (Q02080 ), MEF2B_MOUSE (O55087 ), MEF2C_BOVIN (Q2KIA0 ), MEF2C_HUMAN (Q06413 ), MEF2C_MOUSE (Q8CFN5 ), MEF2C_PIG (A4UTP7 ), MEF2C_PONAB (Q5R444 ), MEF2C_RAT (A0A096MJY4), MEF2D_HUMAN (Q14814 ), MEF2D_MOUSE (Q63943 ), MEF2D_RAT (O89038 ), MEF2D_XENLA (Q03413 ), MEF2_CAEEL (Q9U325 ), MEF2_DROME (P40791 ), MIG1_MAGO7 (G4MWZ7 ), MIG1_MAGOR (A9YDN6 ), MTF1_PEA (O65874 ), PHE1_ARATH (O80805 ), PHE2_ARATH (Q7XJK8 ), PIST_ARATH (P48007 ), PMAP1_SCHPO (P78926 ), PVG4_SCHPO (Q9HGP0 ), RLM1_YEAST (Q12224 ), RLMA_ASPFC (B0XYE0 ), RLMA_ASPFU (Q4WX78 ), SEP1_ARATH (P29382 ), SEP2_ARATH (P29384 ), SEP3_ARATH (O22456 ), SMP1_YEAST (P38128 ), SOC1_ARATH (O64645 ), SRFA_DICDI (Q54TY7 ), SRFB_DICDI (Q54RY6 ), SRFC_DICDI (Q55F37 ), SRFD_DICDI (Q54QY7 ), SRF_CAEEL (Q18955 ), SRF_CHICK (Q90718 ), SRF_DROME (Q24535 ), SRF_HUMAN (P11831 ), SRF_MOUSE (Q9JM73 ), SRF_XENLA (P23790 ), SVP_ARATH (Q9FVC1 ), TM6_VITVI (Q003J2 ), TT16_ARATH (Q8RYD9 )» more
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| PDB [Detailed view] |
18 PDB
1C7U; 1EGW; 1HBX; 1K6O; 1MNM; 1N6J; 1SRS; 1TQE; 3KOV; 3MU6; 3P57; 5F28; 6BYY; 6BZ1; 6C9L; 6WC2; 6WC5; 7NB0 » more |
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