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PROSITE entry PS50112


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General information about the entry

Entry name [info] PAS
Accession [info] PS50112
Entry type [info] MATRIX
Date [info] 01-DEC-2001 CREATED;
07-APR-2021 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC50112
Associated ProRule [info] PRU00140

Name and characterization of the entry

Description [info] PAS repeat profile.
Matrix / Profile [info] 
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=72;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=67;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.1544000; R2=0.0321907; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=2227.3801270; R2=2.8413284; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=229; H_SCORE=2878; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=167; H_SCORE=2702; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: D=-20; I=-20; B1=-40; E1=-40; MI=-105; MD=-105; IM=-105; DM=-105; MM=1; M0=-1;

...
 
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='S';  M= -2,  0,-20,  0,  0,-17,-13, -8,-14, -3,-15,-10,  2,-15,  0, -1,  6,  1, -9,-29,-13, -1;
/M: SY='E';  M= -7, -4,-25, -2, 13,-15,-17, -4,-17,  1,-12,-10, -6, -9,  4,  1, -4, -5,-16,-20, -4,  7;
/M: SY='E';  M=  2,  1,-22,  0,  8,-21,-14, -7,-19,  5,-17,-11,  1,-10,  4,  2,  2, -1,-15,-25,-13,  5;
/M: SY='R';  M= -7, -5,-24, -6,  1, -9,-19, -3,-15,  0, -8, -6, -4,-15, -1,  4, -6, -4,-13,-17, -4, -1;
/M: SY='L';  M=-12,-22,-24,-26,-20, 10,-24,-12, 11,-19, 15, 13,-19,-22,-16,-15,-19, -9,  4,-10,  8,-19;
/M: SY='R';  M= -3, -8,-22, -8,  0,-18,-18,-10,-12,  4,-14, -7, -6,-11, -1, 10, -3, -4, -5,-26,-13, -2;
/M: SY='Q';  M= -6, -5,-22, -5,  3,-17,-17,  1,-15,  0,-11, -5, -3,-14,  6,  5, -3, -4,-14,-23, -8,  3;
/M: SY='I';  M=  1,-18,-20,-23,-17, -4,-21,-19, 12,-19, 10,  6,-14,-18,-14,-16, -9, -2,  9,-23, -7,-17;
/M: SY='L';  M= -7,-25,-22,-28,-19,  5,-27,-19, 16,-22, 18, 12,-22,-16,-16,-19,-17, -8, 11,-20, -2,-19;
/M: SY='E';  M= -8, 14,-24, 17, 24,-28,-13,  2,-26,  4,-22,-17, 10,-10, 12,  1,  3, -6,-24,-31,-17, 18;
/I:         I=-7; MI=-8; MD=-21; IM=-8;
/M: SY='S';  M=  2,  0,-19, -4, -4,-19, -7, -7,-16, -7,-17,-12,  5, -5, -3, -8, 10, 10,-13,-29,-15, -4; D=-4;
/I:         DM=-21;
/M: SY='L';  M=  5,-15,-16,-20,-13, -6,-19,-17,  5,-16,  8,  3,-12,-17,-11,-16, -4,  2,  5,-23, -8,-12; D=-4;
/I:         DM=-21;
/M: SY='P';  M= -6, -1,-25, -1, -3,-19,-14, -8,-11, -7,-16,-10, -1,  3, -5, -9,  0,  0,-11,-28,-14, -6; D=-4;
/I:         DM=-21;
/M: SY='D';  M= -3,  4,-21,  8, -1,-23, -7,-13,-18, -8,-19,-15, -1, -1, -8,-13,  2, -2,-12,-31,-19, -5;
/M: SY='P';  M= -1,-14,-25,-16,-13, -5, -1,-18,-14,-16,-14,-10, -9,  8,-17,-18, -4, -6,-13,-20,-14,-16;
/M: SY='I';  M= -6,-24,-22,-30,-23,  4,-28,-21, 22,-21, 10, 12,-18,-21,-18,-20,-12, -4, 18,-15,  1,-22;
/M: SY='F';  M=-11,-27,-22,-33,-25, 31,-26,-19,  6,-24,  9,  4,-22,-27,-25,-19,-18, -9,  3, 10, 15,-23;
/M: SY='V';  M=  2,-17,-18,-20,-16, -8,-13,-19,  4,-13,  0,  2,-15,-21,-14,-11, -7, -6, 10,-23,-10,-16;
/M: SY='V';  M= -2,-20,-19,-23,-18, -3,-22,-15,  6,-16,  4,  2,-17,-22,-15,-14, -8, -1,  9,-10, -2,-17;
/M: SY='D';  M= -9, 31,-24, 39, 10,-31, -8, -2,-31, -1,-26,-23, 17,-12,  0, -5,  6, -2,-23,-36,-18,  5;
/M:         M=  0, -6,-20, -7,  0,-16,-16, -9, -8, -9, -7, -6, -6, -9, -4,-10, -1, -3, -7,-27,-13, -3;
/M: SY='B';  M= -7, 13,-24, 13,  6,-19,-13, -3,-21,  1,-19,-14, 10,-14,  2, -1,  2, -2,-18,-28,-11,  4;
/M: SY='G';  M=  1, -8,-25,-10,-13,-22, 34,-17,-28,-13,-21,-13, -2,-16,-13,-14,  1, -8,-20,-22,-22,-13;
/I:         I=-7; MI=-8; IM=-8; DM=-15; MD=-15;
/M: SY='R';  M= -9, -7,-21, -8, -4,-15,-17,-10,-13,  0,-13, -7, -5,-12, -4,  2, -9, -8,-12,-15, -8, -5;
/M: SY='I';  M= -8,-25, -9,-31,-24,  4,-30,-24, 20,-24, 10,  9,-20,-24,-20,-23,-15, -7, 17,-21, -3,-23;
/M: SY='I';  M= -4,-13,-16,-19,-14, -3,-22,-16,  7,-17,  5,  4, -9,-20,-12,-15, -4,  2,  7,-26, -7,-14;
/M: SY='Y';  M=-12,-11,-26,-11, -7, 10,-17,  3, -9,-11, -5, -4,-11,-22, -9,-11,-11, -8,-11, -1, 26,-10;
/M: SY='W';  M= -4,-27,-13,-31,-25,  2,-23,-26,  3,-21, -2, -3,-24,-26,-21,-20,-17,-10,  4, 22,  1,-22;
/M: SY='N';  M= -4, 26,-16, 17,  2,-22, -3,  1,-22, -4,-29,-20, 36,-16, -1, -5, 18,  6,-22,-39,-20,  1;
/M: SY='P';  M= -1,  2,-26,  6,  8,-26,-12, -7,-22, -1,-22,-16, -1,  9,  1, -5,  2, -2,-19,-28,-18,  3;
/M: SY='A';  M= 10, -1,-19, -6,  0,-21, -4,-11,-19,  1,-18,-12,  2,-12,  0, -2,  8,  2,-12,-25,-16,  0;
/M: SY='V';  M=  5,-20,-10,-27,-21,  4,-18,-19,  6,-19,  4,  6,-17,-21,-18,-19, -7, -3,  9,-17, -3,-19;
/M: SY='E';  M=  1, -6,-13, -7,  3,-15,-17,-10,-12, -5, -9, -8, -6,-15, -3, -5,  0,  0, -6,-26,-12,  0;
/M: SY='E';  M= -6,  2,-25,  4, 11,-24,-15, -6,-21,  9,-19,-12,  1, -8,  6,  8,  0, -4,-16,-27,-15,  7;
/M: SY='L';  M= -8,-24,-21,-27,-20,  7,-28,-12, 17,-22, 25, 17,-22,-25,-15,-18,-20, -7, 10,-17,  6,-19;
/M: SY='L';  M= -6,-18,-15,-23,-17, 12,-25,-18,  5,-21, 15,  5,-16,-22,-18,-16, -8,  9,  5,-18,  3,-17;
/M: SY='G';  M=  0, -6,-29, -6,-14,-30, 59,-17,-38,-16,-29,-20,  2,-18,-15,-17,  1,-18,-29,-21,-28,-15;
/M: SY='Y';  M=-14,-25,-25,-27,-20, 17,-28, -6,  3,-16,  9,  3,-23,-28,-15,-11,-22,-11, -3, 18, 31,-19;
/M: SY='S';  M= -1, -2,-20, -3,  2,-20,-12, -8,-17, -3,-16,-12,  1, -5,  0, -3,  9,  8,-13,-30,-15,  0;
/M: SY='P';  M= -7,-12,-28, -9,  1,-22,-17,-10,-16,  2,-17, -9, -9, 11,  2,  5, -6, -8,-15,-23,-15, -1;
/M: SY='E';  M= -5,  6,-25, 11, 19,-26,-12,  0,-23,  2,-20,-14,  1, -8,  9, -4,  1, -8,-20,-27,-15, 14;
/M: SY='E';  M=-10, 14,-28, 23, 38,-30,-16, -2,-27,  5,-20,-17,  3, -4, 14, -3,  0, -8,-25,-31,-18, 26;
/M: SY='V';  M= -1,-25,-16,-27,-22,  1,-25,-23, 16,-21, 16,  9,-24,-23,-20,-20,-16, -6, 18,-16, -4,-22;
/M: SY='I';  M= -7,-20,-21,-24,-18, -3,-28,-18, 19,-18, 13, 13,-17,-18,-14,-17,-14, -4, 14,-23, -4,-18;
/M: SY='G';  M= -3, -1,-27,  0, -7,-28, 34,-10,-31,-12,-25,-17,  4,-15, -9,-14,  1,-12,-25,-25,-23, -8;
/M: SY='R';  M=-10, -2,-26, -3,  3,-23,-15, -3,-22, 17,-19, -7,  2,-13,  8, 19, -4, -5,-17,-24,-10,  4;
/M: SY='S';  M= -3,  2,-21, -1, -2,-17,-10, -3,-15, -5,-17, -7,  6, -8,  0, -7,  7,  2,-14,-27,-11, -2;
/I:         MD=-15;
/M: SY='L';  M= -4, -7, -7, -8, -7, -2,-12, -8, -1,-10,  4,  0, -8,-12, -8, -8, -7, -3, -1,-11, -2, -8; D=-1;
/I:         I=-4; MI=-8; MD=-15; IM=-8; DM=-15;
/M: SY='I';  M= -4,-23,-14,-26,-21,  6,-25,-20, 14,-20, 13,  7,-20,-21,-19,-18,-14, -6, 14,-15, -1,-20; D=-1;
/I:         DM=-15;
/M: SY='Y';  M= -8,-16,-22,-18,-14,  1,-14, -9, -5,-11,  0,  0,-13,-23,-11, -8,-12, -8, -5, -9,  6,-14;
/M: SY='E';  M= -8,  9,-24, 14, 17,-21,-15, -3,-22, -1,-17,-14,  3, -9,  5, -5,  1, -5,-19,-29,-14, 11;
/M: SY='F';  M=-12,-21,-19,-25,-18, 13,-27,-10,  7,-17, 12,  7,-17,-25,-15,-10,-16, -6,  5,-14,  8,-17;
/M: SY='I';  M=-10,-24,-14,-28,-22,  9,-29,-16, 12,-20, 10,  7,-20,-24,-17,-16,-15, -5, 10,-13,  6,-20;
/M: SY='H';  M=-12, -2,-27, -1, -1,-17,-10, 31,-22, -7,-15, -5,  1,-13,  1, -4, -6,-12,-21,-25,  1, -2;
/M: SY='P';  M= -8, -9,-32, -4,  3,-26,-16,-11,-18, -5,-22,-15, -9, 38, -4,-11, -5, -6,-22,-29,-21, -4;
/M: SY='E';  M= -8, 12,-18, 18, 24,-28,-12, -3,-28,  3,-21,-18,  4,-10,  7, -3,  1, -7,-24,-31,-18, 15;
/M: SY='D';  M=-10, 17,-22, 24,  5,-23, -9, -6,-25, -6,-21,-19,  6, -9, -5,-10,  2, -3,-19,-30,-13, -1;
/M: SY='R';  M= -7, -9,-23, -9, -4,-14,-19,  1,-10,  0, -6, -2, -7,-19,  1,  7, -7, -6, -6,-23, -4, -3;
/M: SY='E';  M= -1,  2,-23,  4, 10,-22,-10, -8,-21, -1,-18,-14,  0, -4,  1, -4,  0, -6,-18,-27,-16,  5;
/M:         M= -5, -7,-19, -8,  0,-14,-15, -7,-14, -2,-11, -7, -6,-13, -4, -2, -3, -3, -9,-23, -9, -3;
/M: SY='V';  M= -7,-20,-18,-23,-17,  3,-23,-15, 11,-18, 11,  9,-18,-22,-16,-15,-13, -5, 12,-22, -3,-17;
/M: SY='R';  M= -7, -7,-24, -8,  2,-17,-19, -4,-13,  5, -9, -3, -5,-15,  5,  9, -5, -4,-10,-23, -8,  3;
/M: SY='E';  M= -3,  5,-23,  6, 14,-26,-11, -4,-25,  9,-22,-14,  4,-10,  8,  6,  2, -5,-20,-26,-14, 10;
/M:         M= -1,-11,-19,-14, -6,-11,-16,-12, -5, -6, -5, -1, -8,-16, -3, -5, -3, -1, -2,-23, -9, -5;
/I:         I=-5; MI=-8; IM=-8; DM=-15; MD=-15;
/M: SY='L';  M= -9,-20,-22,-23,-16,  4,-27,-12, 12,-20, 18,  9,-18,-23,-13,-15,-16, -6,  7,-18,  3,-16;
/M: SY='Q';  M=-10,  4,-25,  4, 10,-22,-14,  7,-23,  5,-20,-11,  6,-11, 12,  9, -1, -7,-22,-23, -8,  9;
/M: SY='R';  M= -9,  0,-24, -2,  2,-18,-15, -2,-17,  3,-13, -7,  2,-16,  5,  7, -4, -4,-16,-22, -8,  3;
/M: SY='A';  M= 11,-14,-13,-18,-14, -9,-14,-17,  1,-15, -1, -2,-13,-17,-14,-18,  0,  1,  6,-24,-10,-14;
/M: SY='L';  M= -4,-24,-19,-28,-19,  0,-26,-18, 18,-20, 21, 17,-21,-23,-14,-16,-17, -6, 14,-20, -4,-18;
/M: SY='E';  M= -5,  5,-25,  5, 13,-24,-15, -2,-21,  8,-19,-11,  6, -9,  9,  5,  1, -2,-19,-27,-13, 10;
/M: SY='N';  M= -6,  2,-25, -1, -1,-23,  4, -3,-23,  0,-20,-12,  7,-15, -1,  1, -1, -6,-20,-26,-15, -2;
/M: SY='G';  M= -6,  2,-26,  4,  5,-26,  7, -3,-27, -1,-22,-14,  3,-12,  3, -3,  0, -9,-23,-25,-16,  3;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 494 in 352 different sequences
Number of true positive hits 493 in 351 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 88
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.80 %
Recall (true positives / (true positives + false negatives)) 84.85 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] K_Hofmann
Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 3
Feature key [info] DOMAIN
Feature description [info] PAS
Version [info] 6

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 351 sequences 

ADO1_ARATH  (Q94BT6), ADO1_ORYSJ  (Q5Z8K3), ADO2_ARATH  (Q8W420), 

ADO2_ORYSJ  (Q67UX0), ADO3_ARATH  (Q9C9W9), ADO3_ORYSJ  (Q2R2W1), 
AER_PSEAE   (Q9I3F6), AHA1_CAEEL  (O02219), AHRR_HUMAN  (A9YTQ3), 
AHRR_MOUSE  (Q3U1U7), AHRR_RAT(Q75NT5), AHR_CAEEL   (O44712), 
AHR_DELLE   (Q95LD9), AHR_HUMAN   (P35869), AHR_MOUSE   (P30561), 
AHR_MUSCR   (Q8R4S7), AHR_MUSMC   (Q8R4S6), AHR_MUSMM   (Q8R4S5), 
AHR_MUSSI   (Q8R4S4), AHR_MUSSP   (Q8R4S2), AHR_RABIT   (O02747), 
AHR_RAT (P41738), ARCB_ECO57  (P58363), ARCB_ECOLI  (P0AEC3), 
ARCB_SHIFL  (P0AEC4), ARNT2_DANRE (Q9DG12), ARNT2_HUMAN (Q9HBZ2), 
ARNT2_MOUSE (Q61324), ARNT2_RAT   (Q78E60), ARNT_BOVIN  (Q9BE97), 
ARNT_DROME  (O15945), ARNT_HUMAN  (P27540), ARNT_MOUSE  (P53762), 
ARNT_ONCMY  (P79832), ARNT_RABIT  (O02748), ARNT_RAT(P41739), 
ATOS_ECOLI  (Q06067), BAT_HALSA   (Q9HPU8), BDLA_PSEAE  (Q9I3S1), 
BMAL1_CHICK (Q9I8T7), BMAL1_HORSE (A0MLS5), BMAL1_HUMAN (O00327), 
BMAL1_MESAU (O88529), BMAL1_MOUSE (Q9WTL8), BMAL1_NANGA (Q91YA9), 
BMAL1_PONAB (Q5R4T2), BMAL1_RAT   (Q9EPW1), BMAL1_TYTAL (Q6YGZ5), 
BMAL2_CHICK (Q8QGQ7), BMAL2_HUMAN (Q8WYA1), BMAL2_MOUSE (Q2VPD4), 
BPHY_XANC8  (A0A0H2XCS3), BVGS_BORBR  (P26762), BVGS_BORPA  (P40330), 
BVGS_BORPE  (P16575), CCKA_BRUA2  (P0DOA0), CEK1_SCHPO  (P38938), 
CGPB_FUSVN  (Q00858), CLOCK_CHICK (Q8QGQ6), CLOCK_DROME (O61735), 
CLOCK_HUMAN (O15516), CLOCK_MOUSE (O08785), CLOCK_NANGA (Q91YB0), 
CLOCK_PONAB (Q5RAK8), CLOCK_RAT   (Q9WVS9), CLOCK_SPACA (Q91YB2), 
CLOCK_SPAJD (Q91YA8), CLOCK_TYTAL (Q6YGZ4), CRTJ_RHOCA  (P26167), 
CYCL_DROME  (O61734), DCTS_RHOCA  (P37739), DCUS_ECO57  (P0AEC9), 
DCUS_ECOL6  (P59340), DCUS_ECOLI  (P0AEC8), DCUS_SHIFL  (P59341), 
DGCE_ECOLI  (P38097), DGC_VIBC3   (A0A0H3AFM6), DHKH_DICDI  (Q54W36), 
DHKL_DICDI  (Q54RP6), DOSP_ECOLI  (P76129), DPO3E_RHOCB (O68045), 
DSPA_SYNY3  (P20169), EPAS1_HUMAN (Q99814), EPAS1_MOUSE (P97481), 
EPAS1_RAT   (Q9JHS1), ERT1_CANAW  (C4YLC3), ERT1_CANDC  (B9WLA7), 
ERT1_CANGA  (Q6FML7), ERT1_EREGS  (Q754V2), ERT1_KLULA  (Q6CKI5), 
ERT1_LACTC  (C5E2K7), ERT1_PICST  (A3LQV7), ERT1_POSPM  (B8PBQ6), 
ERT1_YEAS1  (B3LMS3), ERT1_YEAS2  (C7GMR4), ERT1_YEAS7  (A6ZLH8), 
ERT1_YEAS8  (D3UEY7), ERT1_YEAST  (P38140), ERT1_ZYGRC  (C5E1J9), 
FILI_METH6  (E5KK10), FIXL_AZOC5  (P26489), FIXL_BRADU  (P23222), 
FIXL_RHIME  (P10955), FLES_PSEAE  (Q9I4N4), GSM1_CANGA  (Q6FLG1), 
GSM1_CANTT  (C5MCK5), GSM1_EREGS  (Q754J3), GSM1_KLULA  (Q6CK33), 
GSM1_KOMPG  (C4QV17), GSM1_PICGU  (A5DRJ2), GSM1_VANPO  (A7TQK0), 
HIF1A_BOSMU (Q0PGG7), HIF1A_BOVIN (Q9XTA5), HIF1A_CHICK (Q9YIB9), 
HIF1A_EOSFB (Q309Z6), HIF1A_HUMAN (Q16665), HIF1A_MOUSE (Q61221), 
HIF1A_ONCMY (Q98SW2), HIF1A_RAT   (O35800), HIF1A_XENLA (Q9I8A9), 
HIF1_CAEEL  (G5EGD2), HIF3A_HUMAN (Q9Y2N7), HIF3A_MOUSE (Q0VBL6), 
HIF3A_RAT   (Q9JHS2), HLH34_CAEEL (P90953), HTR9_HALSA  (Q9HQ00), 
KCNAE_DROME (Q02280), KCNH1_BOVIN (O18965), KCNH1_HUMAN (O95259), 
KCNH1_MOUSE (Q60603), KCNH1_RAT   (Q63472), KCNH2_CANLF (Q9TSZ3), 
KCNH2_HUMAN (Q12809), KCNH2_MOUSE (O35219), KCNH2_RABIT (Q8WNY2), 
KCNH2_RAT   (O08962), KCNH3_HUMAN (Q9ULD8), KCNH3_MOUSE (Q9WVJ0), 
KCNH3_RAT   (O89047), KCNH4_HUMAN (Q9UQ05), KCNH4_RAT   (Q9R1T9), 
KCNH6_CHICK (Q9PT84), KINA_BACSU  (P16497), KINC_BACSU  (P39764), 
KINE_BACSU  (O31661), LOVHK_BRUA1 (B2SB67), LOVHK_BRUA2 (Q2YKK7), 
LOVHK_BRUA4 (A6X554), LOVHK_BRUAB (Q577Y7), LOVHK_BRUC2 (A9MBM8), 
LOVHK_BRUME (Q8YC53), LOVHK_BRUO2 (A5VUS1), LOVHK_BRUSI (A9WYQ7), 
LOVHK_BRUSU (Q8FW73), LOVHK_PSE14 (Q48IV1), LOVHK_PSESM (Q881J7), 
LOVHK_PSEU2 (Q4ZSY3), LOVHK_RHIL3 (Q1M667), LVHK1_ERYLH (Q2NCA3), 
LVHK2_ERYLH (Q2NB77), LVHTH_ERYLH (Q2NB98), MAK1_SCHPO  (Q9P7Q7), 
MCPB_PSEAE  (Q9I6V6), MSMS_METAC  (Q8THF6), NCOA1_HUMAN (Q15788), 
NCOA1_MOUSE (P70365), NCOA1_PIG   (Q4PJW2), NCOA2_DANRE (Q98TW1), 
NCOA2_HUMAN (Q15596), NCOA2_MOUSE (Q61026), NCOA2_RAT   (Q9WUI9), 
NCOA2_XENLA (Q9W705), NCOA2_XENTR (B5DE09), NCOA3_HUMAN (Q9Y6Q9), 
NCOA3_MOUSE (O09000), NCOA3_XENLA (O57539), NIFL_AZOVI  (P30663), 
NIFL_KLEOX  (P56267), NIFL_KLEPN  (P06772), NODV_BRADU  (P15939), 
NPAS1_HUMAN (Q99742), NPAS1_MOUSE (P97459), NPAS2_CHICK (Q5ZQU2), 
NPAS2_HUMAN (Q99743), NPAS2_MOUSE (P97460), NPAS3_HUMAN (Q8IXF0), 
NPAS3_MOUSE (Q9QZQ0), NPAS4_HUMAN (Q8IUM7), NPAS4_MOUSE (Q8BGD7), 
NPAS4_RAT   (Q8CJH6), NPASH_CAEEL (G5EFL9), NPS4A_DANRE (Q1ECW2), 
NPS4B_DANRE (E7FFX1), NPS4L_DANRE (P0DOC7), NTRB_AZOBR  (P45670), 
NTRB_ECO57  (P0AFB6), NTRB_ECOLI  (P0AFB5), NTRB_SHIFL  (P0AFB7), 
NTRY_AZOC5  (Q04850), PASD1_HUMAN (Q8IV76), PASK_HUMAN  (Q96RG2), 
PASK_MOUSE  (Q8CEE6), PDE8A_HUMAN (O60658), PDE8A_MOUSE (O88502), 
PDE8B_HUMAN (O95263), PDE8B_MOUSE (E9Q4S1), PDE8_DROME  (Q6NNF2), 
PDEB_SHEON  (Q8EJM6), PDER_ECOLI  (P77334), PDHS_BRUA1  (B2S758), 
PDHS_BRUA2  (Q2YRB4), PDHS_BRUA4  (A6X5X4), PDHS_BRUAB  (Q57BR6), 
PDHS_BRUC2  (A9M715), PDHS_BRUME  (Q8YIM6), PDHS_BRUO2  (A5VRX4), 
PDHS_BRUSI  (B0CI82), PDHS_BRUSU  (Q8FZ86), PER1_HUMAN  (O15534), 
PER1_MOUSE  (O35973), PER1_RAT(Q8CHI5), PER1_SPAJD  (Q8K3T3), 
PER2_CHICK  (Q8QGQ8), PER2_HUMAN  (O15055), PER2_MOUSE  (O54943), 
PER2_RAT(Q9Z301), PER2_SPAJD  (Q8K3T2), PER3_HUMAN  (P56645), 
PER3_MOUSE  (O70361), PER3_RAT(Q8CJE2), PER_ANTPE   (Q17062), 
PER_DROMA   (Q03353), PER_DROME   (P07663), PER_DROPS   (P12348), 
PER_DROSE   (Q03354), PER_DROSI   (Q03355), PER_DROVI   (P12349), 
PER_DROWI   (Q03297), PER_DROYA   (Q24767), PER_HYACE   (Q25020), 
PER_MANSE   (Q25478), PER_PERAM   (Q25637), PHOR_ECOLI  (P08400), 
PHOR_PSEAE  (P23621), PHOR_SHIDY  (P45609), PHOT1_ARATH (O48963), 
PHOT2_ARATH (P93025), PHOT2_ORYSJ (Q9ST27), PHOT_BACSU  (O34627), 
PHOT_CHLRE  (Q8LPD9), PHOT_LISIN  (Q92DM1), PHOT_LISMO  (P58724), 
PHT1A_ORYSJ (Q2QYY8), PHT1B_ORYSJ (Q2RBR1), PHY1_CERPU  (P25848), 
PHY1_PHYPA  (P36505), PHY1_SELMA  (Q01549), PHY2_CERPU  (Q39557), 
PHYA1_MAIZE (P19862), PHYA1_TOBAC (P33530), PHYA2_SOYBN (B4YB07), 
PHYA3_AVESA (P06593), PHYA4_AVESA (P06594), PHYA_ARATH  (P14712), 
PHYA_CUCPE  (P06592), PHYA_LATSA  (P93673), PHYA_ORYSI  (A2XLG5), 
PHYA_ORYSJ  (Q10DU0), PHYA_PEA(P15001), PHYA_PETCR  (P55141), 
PHYA_POPTM  (O49934), PHYA_SOLTU  (P30733), PHYA_SORBI  (P93526), 
PHYA_SOYBN  (P42500), PHYB1_SOLLC (Q9ZS62), PHYB2_SOYBN (I1MGE5), 
PHYB_ARATH  (P14713), PHYB_ORYSI  (A2XFW2), PHYB_ORYSJ  (Q10MG9), 
PHYB_SOLTU  (P34094), PHYB_SORBI  (P93527), PHYB_SOYBN  (P42499), 
PHYB_TOBAC  (P29130), PHYC_ARATH  (P14714), PHYC_ORYSI  (A2XM23), 
PHYC_ORYSJ  (Q10CQ8), PHYC_SORBI  (P93528), PHYD_ARATH  (P42497), 
PHYE_ARATH  (P42498), PHYE_IPONI  (P55004), PHY_ADICA   (P42496), 
PHY_MOUSC   (P33529), PHY_PICAB   (Q40762), PHY_PINSY   (Q41046), 
PLEC_CAUVC  (P37894), PPRA_PSEAE  (Q9HWA7), PYP_HALHA   (P16113), 
PYP_HALSE   (P81046), PYP_RHOSA   (Q53120), RCOM1_PARXL (Q13YL3), 
RSBP_BACSU  (O07014), SIM1A_DANRE (Q98SJ5), SIM1_HUMAN  (P81133), 
SIM1_MOUSE  (Q61045), SIM1_PANPA  (A1YFY6), SIM1_PANTR  (A2T6X9), 
SIM2_HUMAN  (Q14190), SIM2_MOUSE  (Q61079), SIMA_DROME  (Q24167), 
SIM_DROME   (P05709), STCN_EMENI  (C8VDT4), STC_CLOBE   (P26047), 
TCSA_EMENI  (Q9P896), TDIS_THAAR  (O87939), TLOV1_ARATH (O64511), 
TMOS_PSEME  (Q8KIY1), TODS_PSEP1  (A5W4E3), TODS_PSEPT  (E0X9C7), 
TRH_DROME   (Q24119), TYRR_ECOLI  (P07604), UACR_ECOLI  (Q46802), 
WALK_MAMSC  (A5A2P0), WALK_STAA1  (A7WWQ7), WALK_STAA2  (A6TXG9), 
WALK_STAA3  (Q2FKN7), WALK_STAA8  (Q2G2U4), WALK_STAA9  (A5INR0), 
WALK_STAAB  (Q2YUQ2), WALK_STAAC  (Q5HJX6), WALK_STAAE  (A6QD58), 
WALK_STAAM  (Q7A305), WALK_STAAN  (Q7A8E0), WALK_STAAR  (Q6GKS6), 
WALK_STAAS  (Q6GD71), WALK_STAAT  (A8YYU2), WALK_STAAU  (Q9RDT3), 
WALK_STAAW  (Q7A215), WALK_STAEQ  (Q5HK19), WALK_STAES  (Q8CU87), 
WALK_STAHJ  (Q4LAJ8), WALK_STAS1  (Q4A159), WALK_STRP2  (A0A0H2ZNH9), 
WALK_STRR6  (Q8DPL8), WC1_NEUCR   (Q01371), WC2_NEUCR   (P78714), 
Y3085_AZOC5 (Q04855), Y4LL_SINFN  (P55552), Y8013_DICDI (Q54VU4), 
YCF26_NEOYE (Q1XD95), YCF26_PORPU (P51392), YQIR_BACSU  (P54529)
» more

UniProtKB/Swiss-Prot
False negative sequences		 88 sequences 

ACUK_CHAGB  (Q2GSA4), ACUK_FUSV7  (C7YM38), ACUK_NEUCR  (Q7RUA4), 

ACUK_PHANO  (Q0U7C8), ACUK_PYRTR  (B2W978), ACUK_SCLS1  (A7EAG1), 
ACUK_SORMK  (D1ZRZ5), BPHY_DEIRA  (Q9RZA4), CAR_HALS3   (B0R9Z1), 
CITA_KLEPN  (P52687), CITS_BACSU  (O34427), CITS_HALH5  (Q9RC53), 
DCRA_DESVH  (P35841), DCTS_BACSU  (P96601), DCTS_HALH5  (Q9K997), 
DGCM_ECO57  (Q8X8Q3), DGCM_ECOLI  (P77302), DHAR_CITFR  (P45512), 
DHAR_ECOLI  (P76016), DHKA_DICDI  (Q54U87), DHKD_DICDI  (Q54SP4), 
DHKI_DICDI  (Q86AT9), DPIB_ECOLI  (P77510), ERT12_YARLI (Q6C764), 
ERT1_COPC7  (A8N767), ERT1_DEBHA  (Q6BY37), ERT1_KOMPG  (C4R1K8), 
ERT1_PICGU  (A5DF43), ERT1_SCHCM  (D8Q8R5), ERT1_USTMA  (Q4PD88), 
GSM1_CLAL4  (C4Y4V1), GSM1_DEBHA  (Q6BJW8), GSM1_LODEL  (A5DU46), 
GSM1_PICST  (A3LWY2), GSM1_YEAS1  (B3LQ10), GSM1_YEAS2  (C7GR11), 
GSM1_YEAS7  (A6ZQM3), GSM1_YEAS8  (C8ZBB1), GSM1_YEAST  (P42950), 
GSM1_ZYGRC  (C5DX31), KCNH5_HUMAN (Q8NCM2), KCNH5_MOUSE (Q920E3), 
KCNH5_RAT   (Q9EPI9), KCNH6_HUMAN (Q9H252), KCNH6_RAT   (O54853), 
KCNH7_HUMAN (Q9NS40), KCNH7_MOUSE (Q9ER47), KCNH7_RAT   (O54852), 
KCNH8_HUMAN (Q96L42), KCNH8_MOUSE (P59111), KCNH8_RAT   (Q9QWS8), 
KINB_PSEAI  (O34206), MALK_BACSU  (O05250), NTRB_BRASR  (P10578), 
NTRB_KLEOX  (P06218), NTRB_PROHU  (P28788), NTRB_RHIME  (Q52977), 
NTRB_RHOCB  (P09431), NTRB_SALTI  (P0A2E0), NTRB_SALTY  (P0A2D9), 
NTRB_VIBAL  (P19906), NTRY_AZOBR  (P45675), PER_CAEEL   (Q65ZG8), 
PHOR_BACSU  (P23545), PHOR_HAEIN  (P71380), PHOR_KLEPN  (P45608), 
PHY1_SYNY3  (Q55168), PILS_PSEAE  (P33639), PPK31_SCHPO (O94324), 
PSK1_YEAST  (P31374), PYP_CERS4   (Q53226), PYP_RHOCB   (O69138), 
RCOM2_PARXL (Q13IY4), RCOM_RHORT  (Q2RNI6), RCSC_ECOLI  (P0DMC5), 
RCSC_ECOLX  (P0DMC6), RCSC_SALTI  (Q56128), RCSC_SALTY  (P58662), 
RESE_BACSU  (P35164), ROCR_BACSU  (P38022), SPHS_SYNE7  (P39664), 
TYRR_CITBR  (O54426), TYRR_ENTAG  (Q9ZIB7), TYRR_SALTI  (P0A2D8), 
TYRR_SALTY  (P0A2D7), WALK_BACSU  (Q45614), Y091_CAUVC  (Q9ABX9), 
YKOW_BACSU  (O34311)
» more

UniProtKB/Swiss-Prot
False positive sequences		 1 sequence 

PPK18_SCHPO (Q8TFG6)


				
	

	

		PDB
[Detailed view]		
		
			304 PDB
			


			1BYW; 1D06; 1D7E; 1DP6; 1DP8; 1DP9; 1DRM; 1EW0; 1F98; 1F9I; 1GSV; 1GSW; 
			
				1GSX; 1KOU; 1LL8; 1LSV; 1LSW; 1LSX; 1LT0; 1N9L; 1N9N; 1N9O; 1NWZ; 1ODV; 
				1OJ5; 1OT6; 1OT9; 1OTA; 1OTB; 1OTD; 1OTE; 1OTI; 1P97; 1S1Y; 1S1Z; 1S4R; 
				1S4S; 1S66; 1S67; 1T18; 1T19; 1T1A; 1T1B; 1T1C; 1TS0; 1TS6; 1TS7; 1TS8; 
				1UGU; 1UWN; 1UWP; 1V9Y; 1V9Z; 1VB6; 1WA9; 1X0O; 1XFN; 1XFQ; 1XJ2; 1XJ3; 
				1XJ4; 1XJ6; 1Y28; 2A24; 2B02; 2CMN; 2D01; 2D02; 2GJ3; 2HV1; 2I9V; 2JHE; 
				2K7S; 2KDK; 2KX6; 2L0W; 2L1M; 2L4R; 2MWG; 2OWH; 2OWJ; 2PHY; 2PR5; 2PR6; 
				2PYP; 2PYR; 2QJ5; 2QJ7; 2QWS; 2VEA; 2VLG; 2VV6; 2VV7; 2VV8; 2W0N; 2Z6C; 
				2Z6D; 2ZOH; 2ZOI; 3F1N; 3F1O; 3F1P; 3GDI; 3GEC; 3H7W; 3H82; 3P7N; 3PHY; 
				3PYP; 3RTY; 3T50; 3UMD; 3UME; 3VE3; 3VE4; 3VOL; 3ZQ5; 4B9O; 4BBT; 4BBU; 
				4BBV; 4DJ2; 4DJ3; 4EEP; 4EER; 4EES; 4EET; 4EEU; 4EQ1; 4F3L; 4GCZ; 4GHI; 
				4GS9; 4H6J; 4HHD; 4HI4; 4HOI; 4HP9; 4HQA; 4HY8; 4I38; 4I39; 4I3A; 4I3I; 
				4I3J; 4LLO; 4LPZ; 4LRX; 4LRY; 4LRZ; 4M4X; 4MN5; 4MN6; 4NXB; 4NXE; 4NXF; 
				4NXG; 4PKY; 4R38; 4R3A; 4WL9; 4WLA; 4WN5; 4XT2; 4ZP4; 4ZPH; 4ZPK; 4ZPR; 
				4ZQD; 5AKP; 5F5Y; 5F68; 5F69; 5F6A; 5GX9; 5HD3; 5HD5; 5HDC; 5HDD; 5HDS; 
				5HWT; 5HWV; 5HWW; 5J7E; 5K7L; 5KIZ; 5NJ8; 5NWM; 5NWX; 5SVG; 5SVU; 5SVV; 
				5SVW; 5SY5; 5SY7; 5TBM; 5UFP; 5UYR; 5V0L; 5VA1; 5VA2; 5VA3; 5Y7W; 5Y7Y; 
				6CZW; 6D09; 6D0B; 6D0C; 6E3S; 6E3T; 6E3U; 6GPU; 6GPV; 6MHI; 6MHN; 6MKT; 
				6MMD; 6NDO; 6NDP; 6P4I; 6P5D; 6P5E; 6P5F; 6P5G; 6PBX; 6PBY; 6PH2; 6PH3; 
				6PH4; 6PL0; 6PPS; 6QPJ; 6QQH; 6QQI; 6QQJ; 6QQK; 6QSA; 6S45; 6S46; 6UMY; 
				6UMZ; 6UN0; 6UN2; 6WLE; 6WLP; 6X21; 6X28; 6X2H; 6X37; 6X3D; 6Y7Q; 7ABY; 
				7AV6; 7DUC; 7L59; 7L5A; 7RZW; 7SJJ; 7SPV; 7SPW; 7SPX; 7V7L; 7V7W; 7VNI; 
				7W80; 7WA4; 7XHV; 7XI3; 7XI4; 7Y04; 7YID; 7YIE; 7YIF; 7YIG; 7YIH; 7YIJ; 
				7ZUB; 8A2V; 8A2W; 8A4E; 8A5R; 8A5S; 8AO0; 8AO1; 8CK3; 8CK4; 8CK8; 8DZU; 
				8DZX; 8DZY; 8E02; 8E03; 8E09; 8E1K; 8E1L; 8EOW; 8EP0; 8EP1; 8F5Z; 8GCI; 
				8H77; 8OSJ; 8OSK; 8OSL
			
			

			» more