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| Entry: PS50158 |
General information about the entry
| Entry name [info] | ZF_CCHC |
| Accession [info] | PS50158 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JAN-2002 CREATED;
13-FEB-2019 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC50158 |
| Associated ProRule [info] | PRU00047 |
Name and characterization of the entry
| Description [info] | Zinc finger CCHC-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=18; /DISJOINT: DEFINITION=PROTECT; N1=2; N2=17; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=-0.5831000; R2=0.0164828; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=334.2301331; R2=0.0794979; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=552; H_SCORE=378; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=430; H_SCORE=368; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: D=-20; I=-20; B1=0; E1=0; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='R'; M= -9, -6,-18, -7, -5,-19,-11,-10,-15, -1,-15, -7, -4,-13, -1, 2, -5, -7,-11,-25,-13, -4; /M: SY='K'; M= -6,-10,-24,-11, -5,-19, -8,-13,-16, 4,-14, -7, -6, -7, -3, 4, -6, -6,-12,-23,-14, -5; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='Y'; M=-17,-20,-28,-24,-20, 28,-25, 1, -6,-15, -4, -5,-15,-26,-16,-10,-16, -9,-11, 25, 39,-19; /M: SY='N'; M= -9, 8,-24, 1, 0,-20,-13, -1,-19, 15,-22,-11, 17,-16, 2, 14, 0, -3,-18,-27,-10, 0; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='G'; M= -3, -2,-28, -4,-13,-28, 47,-13,-35,-12,-28,-18, 7,-19,-13,-13, 1,-15,-28,-23,-25,-13; /M: SY='K'; M= -7, 2,-28, 3, 16,-30,-13, -4,-26, 20,-24,-11, 2,-10, 18, 14, -1, -8,-23,-24,-14, 17; /M: SY='P'; M= -4, -6,-26, -5, 5,-18,-15,-10,-14, -4,-15, -9, -6, 7, -2, -6, -2, -2,-14,-26,-14, 0; /M: SY='G'; M= -2, -7,-30, -6,-17,-28, 60,-17,-38,-18,-29,-20, 1,-20,-18,-18, -1,-19,-29,-20,-26,-17; /M: SY='H'; M=-20, 0,-30, 0, 0,-20,-20,100,-30,-10,-20, 0, 10,-20, 10, 0,-10,-20,-30,-30, 20, 0; /M: SY='M'; M=-11,-20,-24,-23,-15, 4,-27,-11, 7, -9, 6, 9,-16,-23, -8, -5,-15, -7, 3, -9, 8,-13; /M: SY='A'; M= 16, -7,-17,-12, -3,-20, -8,-11,-14, 2,-15, -5, -4,-12, 2, 0, 7, -1, -8,-24,-15, -1; /M: SY='R'; M= -6, -2,-25, -4, 0,-21,-14, -7,-23, 18,-22,-12, 3,-14, 3, 24, 0, -4,-16,-22,-12, 0; /M: SY='D'; M=-13, 27,-27, 33, 21,-32,-12, 1,-30, 6,-26,-20, 16,-10, 12, -1, 3, -6,-27,-33,-17, 17; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='P'; M= -9,-10,-31, -6, 0,-24,-19,-11,-21, 2,-23,-14, -9, 31, -1, 3, -4, -2,-22,-24,-18, -4; /M: SY='E'; M= -3, 4,-23, 3, 11,-25,-12, -1,-21, 7,-20,-11, 6,-11, 10, 4, 4, -1,-18,-28,-14, 10; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 737 in 457 different sequences |
| Number of true positive hits | 736 in 456 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 110 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 99.86 % |
| Recall (true positives / (true positives + false negatives)) | 87.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20_shuffled |
| Author [info] | K_Hofmann, N_Hulo |
| Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
| Maximum number of repetitions [info] | 9 |
| Feature key [info] | ZN_FING |
| Feature description [info] | CCHC-type |
| Version [info] | 6 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
456 sequences
AIR1_SCHPO (Q9P795 ), AIR1_YEAST (P40507 ), AIR2_YEAST (Q12476 ), BBP_ASHGO (Q750X2 ), BBP_ASPFU (Q4WXV6 ), BBP_CANAL (Q5AED9 ), BBP_CANGB (Q6FW77 ), BBP_CRYNB (P0CO45 ), BBP_CRYNJ (P0CO44 ), BBP_DEBHA (Q6BSP4 ), BBP_DICDI (Q54BM5 ), BBP_NEUCR (Q8NIW7 ), BBP_SCHPO (O74555 ), BBP_USTMA (Q4P0H7 ), BBP_YARLI (Q6C187 ), BBP_YEAST (Q12186 ), BYR3_SCHPO (P36627 ), CAPSD_CAMVC (P03543 ), CAPSD_CAMVD (P03544 ), CAPSD_CAMVN (Q00956 ), CAPSD_CAMVS (P03542 ), CAPSD_CERV (P05399 ), CAPSD_CYLCV (Q7TD09 ), CAPSD_FMVD (P09519 ), CAPSD_SOCMV (P15627 ), CNBP_BOVIN (Q3T0Q6 ), CNBP_CHICK (O42395 ), CNBP_DROME (Q8T8R1 ), CNBP_HUMAN (P62633 ), CNBP_MOUSE (P53996 ), CNBP_PONAB (Q5R5R5 ), CNBP_RAT (P62634 ), COLDT_HUMAN (Q6ZST2 ), COPIA_DROME (P04146 ), CPSF4_BOVIN (O19137 ), CPSF4_DROME (Q9VPT8 ), CPSF4_HUMAN (O95639 ), CPSF4_MOUSE (Q8BQZ5 ), CPSF4_RAT (Q5FVR7 ), CPSF4_XENLA (Q6DJP7 ), CPSF4_XENTR (Q66KE3 ), CP_CSVMV (Q66283 ), CSP1_ARATH (O65639 ), CSP2_ARATH (Q41188 ), CSP3_ARATH (Q94C69 ), CSP4_ARATH (Q38896 ), CXIP4_ARATH (Q84Y18 ), CYP59_ARATH (Q6Q151 ), DDX41_DROME (Q9V3C0 ), DIPP_MIMIV (Q5UQW2 ), GA113_HUMAN (P62684 ), GAG_ALVA (P0C776 ), GAG_BAEVM (P03341 ), GAG_BIV29 (P19558 ), GAG_BLVAU (P25058 ), GAG_BLVJ (P03344 ), GAG_CAEVC (P33458 ), GAG_EIAV9 (P69730 ), GAG_EIAVC (P69731 ), GAG_EIAVY (P69732 ), GAG_FIVPE (P16087 ), GAG_FIVSD (P19027 ), GAG_FIVT2 (P31821 ), GAG_FIVWO (Q05313 ), GAG_FLV (P10262 ), GAG_GALV (P21416 ), GAG_HTL1A (P03345 ), GAG_HTL1C (P14076 ), GAG_HTL1L (P0C209 ), GAG_HTL1M (P14077 ), GAG_HTL32 (Q0R5R4 ), GAG_HTL3P (Q09T00 ), GAG_HTLV2 (P03346 ), GAG_HV190 (O93182 ), GAG_HV192 (O12157 ), GAG_HV193 (O89291 ), GAG_HV196 (Q9QBY4 ), GAG_HV197 (Q9QC00 ), GAG_HV19N (P0C1K7 ), GAG_HV1A2 (P03349 ), GAG_HV1AN (Q77372 ), GAG_HV1B1 (P03347 ), GAG_HV1B5 (P04593 ), GAG_HV1B9 (Q73367 ), GAG_HV1BR (P03348 ), GAG_HV1C4 (P05887 ), GAG_HV1EL (P04592 ), GAG_HV1ET (Q75001 ), GAG_HV1H2 (P04591 ), GAG_HV1J3 (P12494 ), GAG_HV1JR (P20873 ), GAG_HV1LW (Q70622 ), GAG_HV1M2 (Q9QBZ2 ), GAG_HV1MA (P04594 ), GAG_HV1MN (P05888 ), GAG_HV1MP (Q9QBZ6 ), GAG_HV1MV (Q79665 ), GAG_HV1N5 (P12493 ), GAG_HV1ND (P18800 ), GAG_HV1OY (P20889 ), GAG_HV1RH (P05890 ), GAG_HV1S2 (Q9WC53 ), GAG_HV1S9 (Q9WC62 ), GAG_HV1SE (O89939 ), GAG_HV1U4 (P24736 ), GAG_HV1V9 (Q9Q721 ), GAG_HV1VI (Q9QSR4 ), GAG_HV1Y2 (P35962 ), GAG_HV1YB (Q9IDV8 ), GAG_HV1YF (O91079 ), GAG_HV1Z2 (P12495 ), GAG_HV2BE (P18095 ), GAG_HV2CA (P24106 ), GAG_HV2D1 (P17756 ), GAG_HV2D2 (P15832 ), GAG_HV2EH (Q74230 ), GAG_HV2G1 (P18041 ), GAG_HV2KR (Q74119 ), GAG_HV2NZ (P05891 ), GAG_HV2RO (P04590 ), GAG_HV2SB (P12450 ), GAG_HV2ST (P20874 ), GAG_HV2UC (Q76633 ), GAG_IPHA (P04023 ), GAG_IPMA (P11365 ), GAG_JEMBR (Q82850 ), GAG_JSRV (P31622 ), GAG_KORV (Q9TTC2 ), GAG_MLVAV (P03336 ), GAG_MLVBM (P29167 ), GAG_MLVCB (P27460 ), GAG_MLVDE (P29168 ), GAG_MLVDU (P23090 ), GAG_MLVF5 (P26807 ), GAG_MLVFF (P26806 ), GAG_MLVFP (P26805 ), GAG_MLVHO (P21435 ), GAG_MLVMS (P03332 ), GAG_MLVRD (P11269 ), GAG_MMTVB (P10258 ), GAG_MMTVC (P11284 ), GAG_MPMV (P07567 ), GAG_MSVMO (P03334 ), GAG_OMVVS (P16900 ), GAG_RSVP (P03322 ), GAG_RSVSB (O92954 ), GAG_SIVCZ (P17282 ), GAG_SIVEK (Q1A250 ), GAG_SIVG1 (Q02843 ), GAG_SIVGB (P22381 ), GAG_SIVM1 (P05894 ), GAG_SIVMB (Q1A268 ), GAG_SIVMK (P05893 ), GAG_SIVMS (P31634 ), GAG_SIVS4 (P12496 ), GAG_SIVSP (P19504 ), GAG_SIVTN (Q8AII2 ), GAG_SIVV1 (P27972 ), GAG_SIVVG (P27978 ), GAG_SIVVT (P05892 ), GAG_SRV1 (P04022 ), GAG_SRV2 (P51516 ), GAG_VILV (P03352 ), GAG_VILV1 (P23424 ), GAG_VILV2 (P23425 ), GAG_VILVK (P35955 ), GAG_WDSV (Q88937 ), GAG_WMSV (P03330 ), GAG_XMRV3 (Q2F7J2 ), GAG_XMRV4 (Q2F7I9 ), GAG_XMRV6 (Q27ID9 ), GAK10_HUMAN (P87889 ), GAK19_HUMAN (Q9YNA8 ), GAK21_HUMAN (P62683 ), GAK24_HUMAN (P63145 ), GAK5_HUMAN (Q9HDB9 ), GAK6_HUMAN (Q7LDI9 ), GAK7_HUMAN (P63130 ), GAK8_HUMAN (P62685 ), GAK9_HUMAN (P63126 ), GGAG_FLV (P0DOH3 ), GGAG_MLVAV (P0DOG8 ), GGAG_MLVCB (P0DOH4 ), GGAG_MLVFF (P0DOH5 ), GGAG_MLVFP (P0DOH6 ), GGAG_MLVMN (Q8UN02 ), GIS2_YEAST (P53849 ), GLH1_CAEEL (P34689 ), GLH2_CAEEL (Q966L9 ), GLH3_CAEEL (O01836 ), GLH4_CAEEL (O76743 ), GRP2_NICSY (P27484 ), HEXP_LEIMA (Q04832 ), KUA1_ARATH (Q9LVS0 ), LARK_DROME (Q94901 ), LIN28_CAEBR (Q61CX7 ), LIN28_CAEEL (P92186 ), LIN28_CAERE (P91599 ), LN28A_CHICK (Q45KJ5 ), LN28A_DANRE (Q803L0 ), LN28A_HUMAN (Q9H9Z2 ), LN28A_MOUSE (Q8K3Y3 ), LN28A_XENLA (Q8JHC4 ), LN28A_XENTR (Q5EB47 ), LN28B_CHICK (Q45KJ4 ), LN28B_HUMAN (Q6ZN17 ), LN28B_MOUSE (Q45KJ6 ), LN28B_XENLA (Q8AVK2 ), M5162_ARATH (Q9FKF9 ), MPE1_YEAST (P35728 ), PEG10_HUMAN (Q86TG7 ), PEG10_MOUSE (Q7TN75 ), PHIP1_ARATH (Q9M3B8 ), PNMA3_HUMAN (Q9UL41 ), PNMA3_MOUSE (Q8JZW8 ), POK9_HUMAN (P63128 ), POLG_PVCV1 (Q91DM0 ), POLG_PVCV2 (Q6XKE6 ), POLX_TOBAC (P10978 ), POL_ALV (Q7SQ98 ), POL_ALVA (Q04095 ), POL_BAEVM (P10272 ), POL_BIV29 (P19560 ), POL_BLVAU (P25059 ), POL_BLVJ (P03361 ), POL_COYMV (P19199 ), POL_FLV (P10273 ), POL_GALV (P21414 ), POL_HTL1A (P03362 ), POL_HTL1C (P14078 ), POL_HTL1L (P0C211 ), POL_HTL32 (Q0R5R2 ), POL_HTL3P (Q4U0X6 ), POL_HTLV2 (P03363 ), POL_HV190 (O93215 ), POL_HV192 (O12158 ), POL_HV193 (O89290 ), POL_HV196 (Q9QBY3 ), POL_HV197 (Q9QBZ9 ), POL_HV19N (O41798 ), POL_HV1A2 (P03369 ), POL_HV1AN (Q77373 ), POL_HV1B1 (P03366 ), POL_HV1B5 (P04587 ), POL_HV1B9 (Q73368 ), POL_HV1BR (P03367 ), POL_HV1C4 (P05960 ), POL_HV1EL (P04589 ), POL_HV1ET (Q75002 ), POL_HV1H2 (P04585 ), POL_HV1J3 (P12498 ), POL_HV1JR (P20875 ), POL_HV1LW (P0C6F2 ), POL_HV1M2 (Q9QBZ1 ), POL_HV1MA (P04588 ), POL_HV1MN (P05961 ), POL_HV1MP (Q9QBZ5 ), POL_HV1MV (Q79666 ), POL_HV1N5 (P12497 ), POL_HV1ND (P18802 ), POL_HV1OY (P20892 ), POL_HV1RH (P05959 ), POL_HV1S2 (Q9WC54 ), POL_HV1S9 (Q9WC63 ), POL_HV1SE (O89940 ), POL_HV1U4 (P24740 ), POL_HV1V9 (Q9Q720 ), POL_HV1VI (Q9QSR3 ), POL_HV1Y2 (P35963 ), POL_HV1YB (Q9IDV9 ), POL_HV1YF (O91080 ), POL_HV1Z2 (P12499 ), POL_HV2BE (P18096 ), POL_HV2CA (P24107 ), POL_HV2D1 (P17757 ), POL_HV2D2 (P15833 ), POL_HV2EH (Q89928 ), POL_HV2G1 (P18042 ), POL_HV2KR (Q74120 ), POL_HV2NZ (P05962 ), POL_HV2RO (P04584 ), POL_HV2SB (P12451 ), POL_HV2ST (P20876 ), POL_HV2UC (Q76634 ), POL_JEMBR (Q82851 ), POL_JSRV (P31623 ), POL_KORV (Q9TTC1 ), POL_MLVAV (P03356 ), POL_MLVBM (Q7SVK7 ), POL_MLVCB (P08361 ), POL_MLVF5 (P26810 ), POL_MLVFF (P26809 ), POL_MLVFP (P26808 ), POL_MLVMS (P03355 ), POL_MLVRD (P11227 ), POL_MMTVB (P03365 ), POL_MMTVC (P11283 ), POL_MPMV (P07572 ), POL_RSVP (P03354 ), POL_RSVSB (O92956 ), POL_SIVCZ (P17283 ), POL_SIVEK (Q1A249 ), POL_SIVG1 (Q02836 ), POL_SIVGB (P22382 ), POL_SIVM1 (P05896 ), POL_SIVMB (Q1A267 ), POL_SIVMK (P05897 ), POL_SIVS4 (P12502 ), POL_SIVSP (P19505 ), POL_SIVTN (Q8AII1 ), POL_SIVV1 (P27973 ), POL_SIVVG (P27980 ), POL_SIVVT (P05895 ), POL_SRV1 (P04025 ), POL_SRV2 (P51517 ), POL_VILV (P03370 ), POL_VILV1 (P23426 ), POL_VILV2 (P23427 ), POL_VILVK (P35956 ), POL_WDSV (O92815 ), POL_WMSV (P03359 ), POL_XMRV3 (Q2F7J3 ), POL_XMRV4 (Q2F7J0 ), POL_XMRV6 (A1Z651 ), POST_XENLA (P27536 ), PRO_BLVAU (P0DOI1 ), PRO_BLVJ (P0DOI0 ), PRO_HTL1A (P10274 ), PRO_HTL1C (P14074 ), PRO_HTL1L (P0C210 ), PRO_HTL32 (Q0R5R3 ), PRO_HTL3P (Q09SZ9 ), PRO_HTLV2 (P03353 ), PRO_JSRV (P31625 ), PRO_MMTVB (P10271 ), PRO_MMTVC (Q9IZT2 ), PRO_MPMV (P07570 ), PRO_SRV1 (P04024 ), PRO_SRV2 (P51518 ), RBBP6_HUMAN (Q7Z6E9 ), RBBP6_MOUSE (P97868 ), RBM41_DANRE (Q6IQ97 ), RBM4B_HUMAN (Q9BQ04 ), RBM4B_MOUSE (Q8VE92 ), RBM4B_PIG (Q06AT9 ), RBM4B_RAT (Q64LC9 ), RBM4_BOVIN (Q3MHX3 ), RBM4_HUMAN (Q9BWF3 ), RBM4_MACFA (Q4R979 ), RBM4_MOUSE (Q8C7Q4 ), RBM4_RABIT (Q9BDY9 ), RECQ4_MOUSE (Q75NR7 ), RFA1C_ORYSJ (Q65XV7 ), RFA1E_ARATH (F4JSG3 ), RH35A_ORYSJ (Q0E3X4 ), RH35_ARATH (Q9LU46 ), RH3A_MAIZE (A0A1D6GDY8), RH3B_MAIZE (A0A1D6LAB7), RH3_ARATH (Q8L7S8 ), RH3_ORYSJ (Q0DM51 ), RSZ21_ARATH (O81127 ), RSZ21_ORYSJ (Q6K4N0 ), RSZ22_ARATH (O81126 ), RSZ32_ARATH (Q9FYB7 ), RSZ33_ARATH (Q8VYA5 ), RTL3_HUMAN (Q8N8U3 ), RTL3_MOUSE (Q6P1Y1 ), RTL4_HUMAN (Q6ZR62 ), RTL4_MOUSE (Q3URY0 ), RZ1A_ARATH (Q9LIN3 ), RZ1B_ARATH (O22703 ), RZ1C_ARATH (Q8RWN5 ), RZ21A_ORYSJ (Q69KL9 ), RZ22A_ARATH (Q9SJA6 ), RZP23_ORYSJ (Q6K9C3 ), SF01_HUMAN (Q15637 ), SF01_MOUSE (Q64213 ), SF1_ARATH (Q9LU44 ), SLU7_CAEEL (Q21278 ), SLU7_NEUCR (Q7SDY6 ), SLU7_YEAST (Q02775 ), SR1IP_DANRE (Q3B7G7 ), SR1IP_HUMAN (Q8N9Q2 ), SR1IP_MOUSE (Q4V9W2 ), SR1IP_RAT (Q5RJP9 ), SR1IP_XENTR (Q28EE8 ), SRSF7_BOVIN (Q3T106 ), SRSF7_HUMAN (Q16629 ), SRSF7_MOUSE (Q8BL97 ), TLH1_SCHPO (P0CT33 ), TLH2_SCHPO (Q1RKN3 ), TOP3A_ARATH (Q9LVP1 ), TUT4_HUMAN (Q5TAX3 ), TUT4_MOUSE (B2RX14 ), TUT7_HUMAN (Q5VYS8 ), TUT7_MOUSE (Q5BLK4 ), U1131_ARATH (Q9CAE4 ), VASAL_PENVA (Q4JG17 ), XRN2_ARATH (Q9FQ02 ), XRN2_ASPFU (Q8TFZ1 ), XRN2_ASPOR (Q2UCP5 ), XRN2_CHAGB (Q2GNZ6 ), XRN2_CRYNB (P0CL89 ), XRN2_CRYNJ (P0CL88 ), XRN2_EMENI (Q5BFH3 ), XRN2_GIBZE (Q4HWE2 ), XRN2_USTMA (Q4P149 ), XRN3_ARATH (Q9FQ03 ), XRN4_ARATH (Q9FQ04 ), Y1R1_DROME (P16424 ), YG31A_YEAST (Q12173 ), YG31B_YEAST (Q99315 ), YI31A_YEAST (Q99219 ), YI31B_YEAST (Q7LHG5 ), YL92_SCHPO (Q9HFF2 ), YORF_SCHPO (O94264 ), YRD6_CAEEL (Q09575 ), YTH1_CRYNB (P0CS65 ), YTH1_CRYNJ (P0CS64 ), YTH1_USTMA (Q4P384 ), ZCC17_HUMAN (Q9NP64 ), ZCC17_MACFA (Q95KF9 ), ZCC17_MOUSE (Q9ESX4 ), ZCH12_MOUSE (Q9CZA5 ), ZCH12_RAT (Q5HZA3 ), ZCH13_HUMAN (Q8WW36 ), ZCH14_HUMAN (Q8WYQ9 ), ZCH14_MOUSE (Q8VIG0 ), ZCH24_HUMAN (Q8N2G6 ), ZCH24_MACFA (Q8HXK7 ), ZCH24_MOUSE (B2RVL6 ), ZCHC2_HUMAN (Q9C0B9 ), ZCHC2_MOUSE (Q69ZB8 ), ZCHC2_RAT (Q498S6 ), ZCHC3_HUMAN (Q9NUD5 ), ZCHC3_MOUSE (Q8BPK2 ), ZCHC4_XENLA (Q6DCD7 ), ZCHC7_BOVIN (Q2KIN0 ), ZCHC7_HUMAN (Q8N3Z6 ), ZCHC7_MOUSE (B1AX39 ), ZCHC7_RAT (B1WC15 ), ZCHC7_XENLA (A1L2T6 ), ZCHC8_CHICK (Q5F3D1 ), ZCHC8_DROME (Q2PE14 ), ZCHC8_HUMAN (Q6NZY4 ), ZCHC8_MOUSE (Q9CYA6 ), ZCHC8_PONAB (Q5R789 ), ZCHC8_XENLA (Q6DD45 ), ZCHC9_HUMAN (Q8N567 ), ZCHC9_MOUSE (Q8R1J3 ), ZCRB1_BOVIN (Q56JZ7 ), ZCRB1_DANRE (Q5SP50 ), ZCRB1_HUMAN (Q8TBF4 ), ZCRB1_MOUSE (Q9CZ96 ), ZCRB1_RAT (Q499V6 ), ZCRB1_XENLA (Q6DJI9 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
110 sequences
CAPSD_CAMVE (Q02951 ), CLIP1_CHICK (O42184 ), CLIP1_HUMAN (P30622 ), CLIP1_MOUSE (Q922J3 ), CLIP1_RAT (Q9JK25 ), DDB2_ARATH (Q6NQ88 ), DDB2_ORYSJ (Q84KJ3 ), DDX41_DICDI (Q54KG1 ), DDX41_HUMAN (Q9UJV9 ), DDX41_MOUSE (Q91VN6 ), EHD2_ORYSI (B8BGV5 ), EHD2_ORYSJ (B1B534 ), GAGXE_DROME (Q9NBX5 ), GP_ANDV (Q9E006 ), GP_BCCV (P0DTJ0 ), GP_DOBV (Q806Y7 ), GP_HANTB (P28728 ), GP_HANTH (P16493 ), GP_HANTL (P16853 ), GP_HANTV (P08668 ), GP_NYV (Q83887 ), GP_PHV (P27315 ), GP_PUUMG (P21400 ), GP_PUUMK (P41265 ), GP_PUUMP (P41266 ), GP_PUUMS (P27312 ), GP_SEOU8 (P33455 ), GP_SEOUR (P28729 ), GP_SEOUS (P17880 ), GP_SINV (Q89905 ), GP_TULV (P0DTJ1 ), HPF1_DROME (Q9VNI3 ), IDD10_ARATH (Q700D2 ), IDD11_ARATH (Q9LRW7 ), IDD12_ARATH (O22759 ), IDD13_ARATH (F4JYZ8 ), IDD14_ARATH (Q9C9X7 ), IDD15_ARATH (F4IPE3 ), IDD16_ARATH (Q9FRH4 ), IDD1_ARATH (Q9LVQ7 ), IDD2_ARATH (Q9SCQ6 ), IDD3_ARATH (Q9ZWA6 ), IDD4_ARATH (Q8GYC1 ), IDD5_ARATH (Q9ZUL3 ), IDD6_ARATH (Q8RWX7 ), IDD7_ARATH (Q8H1F5 ), IDD8_ARATH (Q9FFH3 ), IDD9_ARATH (Q944L3 ), LIN28_DROME (Q9VRN5 ), MBM_DROME (Q9VPM5 ), MEP1_CAEBR (Q61SK8 ), MEP1_CAEEL (Q21502 ), MYBS3_ORYSJ (Q7XC57 ), POLR1_ARATH (Q94HW2 ), POLR2_ARATH (Q9ZT94 ), PQT3L_ARATH (B9DFV2 ), PQT3_ARATH (F4JP52 ), RH35B_ORYSJ (Q5Z6G5 ), RH43_ARATH (Q9SZB4 ), RNP1_CAEEL (Q10667 ), RP9_HUMAN (Q8TA86 ), RP9_MOUSE (P97762 ), SIGM3_REOVD (P03527 ), SIGM3_REOVJ (P30211 ), SIGM3_REOVL (P07939 ), SLU7A_ARATH (Q9SHY8 ), SLU7B_ARATH (O23174 ), SLU7_ASHGO (Q74ZN9 ), SLU7_ASPFU (Q4WWR2 ), SLU7_BOVIN (Q3ZBE5 ), SLU7_CHICK (Q5ZIG2 ), SLU7_CRYNB (P0CR53 ), SLU7_CRYNJ (P0CR52 ), SLU7_DANRE (Q5U3F2 ), SLU7_DICDI (Q54TA0 ), SLU7_DROME (Q9VAQ7 ), SLU7_EMENI (Q5B3U2 ), SLU7_HUMAN (O95391 ), SLU7_MACFA (Q4R4P2 ), SLU7_MAGO7 (Q51LA6 ), SLU7_MOUSE (Q8BHJ9 ), SLU7_ORYSI (A2YQU8 ), SLU7_ORYSJ (Q6ZK48 ), SLU7_RAT (Q80ZG5 ), SLU7_SCHPO (Q9Y7Y2 ), SLU7_XENLA (Q3KQD1 ), SLU7_YARLI (Q6C9T0 ), TOP3A_ORYSJ (C7J0A2 ), XRN2_CAEBR (Q60SG7 ), XRN2_CAEEL (Q9U299 ), XRN2_CHICK (Q5ZIP4 ), XRN2_DROME (Q9VM71 ), XRN2_HUMAN (Q9H0D6 ), XRN2_MOUSE (Q9DBR1 ), XRN2_NEUCR (Q8WZX5 ), XRN2_PONAB (Q5R4L5 ), Y4919_ARATH (Q8VZ67 ), YTH1_YEAST (Q06102 ), ZCC18_HUMAN (P0CG32 ), ZCC18_MOUSE (Q8VD24 ), ZCH10_HUMAN (Q8TBK6 ), ZCH10_MOUSE (Q9CX48 ), ZCH10_RAT (Q5EB97 ), ZCH12_BOVIN (Q08DL1 ), ZCH12_HUMAN (Q6PEW1 ), ZCHC4_BOVIN (E1BGQ2 ), ZCHC4_HUMAN (Q9H5U6 ), ZCHC4_MOUSE (Q8BKW4 ), ZCHC4_RAT (D3ZV31 ), ZCHC4_XENTR (Q66IH9 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
EIF3G_ASHGO (Q759T4 ) |
| PDB [Detailed view] |
78 PDB
1A6B; 1AAF; 1CL4; 1DSQ; 1DSV; 1ESK; 1F6U; 1HVN; 1HVO; 1MFS; 1NC8; 1NCP; 1U6P; 1WWD; 1WWE; 1WWF; 1WWG; 2BL6; 2CQF; 2DI2; 2E1X; 2EC7; 2EXF; 2HQH; 2IHX; 2IWJ; 2JZW; 2L45; 2L46; 2L4L; 2LI8; 2LLI; 2M3Z; 2MQV; 2MS0; 2MS1; 2YSA; 2ZNF; 3E2U; 3NYB; 3TRZ; 3TS0; 3TS2; 5A9E; 5I1R; 5MPS; 5MQ0; 5O2U; 5UDZ; 5W0B; 5W0M; 5W0N; 5W0O; 5XJC; 5YLZ; 6BK8; 6DNH; 6EXN; 6ICZ; 6QDV; 6R22; 6R23; 6R24; 6RWG; 6T61; 6T63; 6T64; 6UCA; 6URG; 6URO; 7Q5B; 7S7B; 7S7C; 7W5A; 7W5B; 7Z4Y; 7Z4Z; 7Z52 » more |
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