PROSITE entry PS50178
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General information about the entry
Entry name [info] | ZF_FYVE |
Accession [info] | PS50178 |
Entry type [info] | MATRIX |
Date [info] |
01-DEC-2001 CREATED;
10-MAY-2017 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC50178 |
Associated ProRule [info] | PRU00091 |
Name and characterization of the entry
Description [info] | Zinc finger FYVE/FYVE-related type profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=61; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=56; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.9551001; R2=0.0082987; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=4153.7788086; R2=3.1326315; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=789; H_SCORE=6625; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=548; H_SCORE=5870; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: D=-20; I=-20; B1=-50; E1=-50; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='D'; M=-12, 7,-32, 13, 4,-23, -4,-12,-31, 0,-26,-21, -2,-15, -4, -7, -6,-10,-26, 7, -9, 1; /M: SY='D'; M= -8, 7,-26, 8, 4,-25,-10, -9,-16, 4,-19,-11, 6,-14, 1, -1, -2, -7,-14,-28,-15, 2; /M: SY='D'; M= -6, 13,-27, 21, 15,-31, 4, -8,-32, -1,-26,-21, 5, -5, -1, -8, 4, -6,-25,-31,-22, 7; /M: SY='V'; M= 5, -7,-16, -7,-10,-16,-12,-17, -5, -6,-13, -8, -7,-18,-11, -8, 6, 2, 8,-30,-15,-11; /M: SY='B'; M= -3, 7,-22, 7, 2,-23, -8, -9,-20, -2,-21,-15, 7, -4, -2, -7, 7, 3,-16,-32,-18, 0; /M: SY='H'; M= -8, -5, -7, -8, 3,-16,-20, 7,-18, -2,-15, -6, -2,-17, 2, -1, -3, -6,-15,-28, -8, 1; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='M'; M= -4,-11,-23,-15, -9,-10,-14, 3, -6, -9, -5, 7, -6,-13, 0, -6, -6, -6, -9,-21, -3, -6; /M: SY='I'; M= -8, -8,-23,-12,-11, -7,-22,-10, 2, -8, -1, -1, -3,-20, -8, -4, -6, -1, -1,-21, 0,-12; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='H'; M= -8, 3,-26, 3, -2,-27, 10, 11,-29, -4,-24,-11, 7,-16, 3, -2, 2,-10,-24,-27,-13, -1; /M: SY='K'; M= -6, -3,-24, -5, 8,-21,-20,-11,-17, 16,-16, -8, -3,-11, 5, 10, -2, 2,-11,-24,-11, 6; /M: SY='E'; M= -7, -2,-25, -1, 10,-20,-16,-11,-19, -3,-19,-13, -4, 9, 3, -7, 4, 7,-17,-27,-16, 6; /M: SY='F'; M=-16,-24,-21,-31,-21, 49,-28,-18, -2,-19, 9, 1,-17,-26,-27,-13,-18, -7, -2, 0, 18,-21; /M: SY='G'; M= -3, 0,-21, -9,-14, -2, 11,-12,-18,-15,-18,-13, 11,-20,-16,-14, 4, -3,-16,-22,-12,-14; /M: SY='I'; M= 0,-14,-20,-21,-16, -2,-19,-16, 5,-13, 5, 4,-10,-21,-13,-11, -9, -4, 4,-15, -5,-15; /M: SY='L'; M=-11,-11,-22,-14,-16, 5,-24,-17, 6,-20, 12, 2,-10,-24,-18,-17,-15, -4, 2,-14, -1,-16; /I: MD=-16; /M: SY='S'; M= -1, -6,-19,-10, -9,-15, -1,-15, -9, -9,-10, -7, -1,-17,-10, -9, 2, 1, -4,-26,-15,-10; D=-3; /I: I=-5; MI=0; IM=0; DM=-16; /M: SY='R'; M=-12,-13,-19,-15, -8,-16,-15, -7,-20, 12,-15, -8, -6,-22, -1, 37, -9,-10,-12,-19, -7, -8; /M: SY='R'; M= -3, -7,-17, -9, -2,-26, -3,-10,-28, 17,-23,-11, -3,-16, 4, 20, -5,-10,-19,-22,-16, 0; /M: SY='H'; M=-12, -6,-27, -7, -5,-18,-20, 63,-18,-12,-16, -1, 2,-14, 2, -6, -7,-14,-17,-29, 10, -5; /M: SY='H'; M=-16, -2,-27, -4, -3,-17,-20, 60,-20, -4,-14, 3, 6,-20, 4, 0,-10,-15,-19,-28, 10, -3; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='R'; M=-14,-12,-26,-12, -2,-12,-21, -7,-18, 15,-12, -7, -5,-20, 1, 39, -8, -7,-10,-21, -8, -3; /M: SY='B'; M= -3, 6,-23, 6, -1,-18,-14, 6,-17, -1,-16,-10, 4,-15, 0, -5, 0, -4,-15,-23, -1, -2; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='G'; M= -3, -8,-29, -8,-12,-29, 45,-15,-36, -7,-28,-17, 1,-18, -9, -4, 0,-15,-27,-21,-25,-11; /M: SY='R'; M=-12, -2,-28, -1, 1,-21,-14, -1,-23, 12,-18, -8, 0,-16, 7, 17, -6, -7,-19,-14, -8, 3; /M: SY='I'; M= -6,-20,-22,-24,-20, -3,-28,-18, 17,-12, 8, 7,-15,-23,-15, -8,-14, -6, 16,-21, -2,-20; /M: SY='F'; M=-10,-28,-17,-32,-27, 32,-29,-21, 14,-24, 12, 5,-23,-28,-29,-19,-14, -5, 18,-10, 13,-27; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='Q'; M= 0, 1,-24, 1, 2,-27, 3, -8,-24, 3,-21,-10, 0,-13, 6, 0, 2, -5,-19,-24,-17, 3; /M: SY='R'; M=-10, 5,-26, 7, 8,-20,-15, -5,-27, 18,-24,-15, 6,-13, 4, 20, 0, -5,-19,-25,-12, 5; /I: I=-7; MI=-8; IM=-8; DM=-15; MD=-15; /M: SY='C'; M=-12,-17, 95,-25,-25,-20,-28, -8,-30,-27,-20,-17,-15,-37,-23,-25,-10,-12,-13,-47,-22,-25; /M: SY='S'; M= -1,-11, -6,-13,-13,-12, 4,-17,-17,-15,-11,-10, -5,-20,-13,-14, 6, 1,-11,-28,-16,-13; /M: SY='G'; M= -3, -3,-23, -3, -4,-22, 4,-12,-19, -4,-20,-13, 1, -9, -5, -5, 2, -6,-13,-28,-19, -5; /M: SY='R'; M=-14, 7,-27, 6, 13,-20,-13, 5,-25, 9,-19,-13, 11,-15, 8, 16, -4, -9,-24,-26,-11, 9; /M: SY='T'; M= -3,-11,-22,-17,-10,-10,-19,-14, -7, -2,-10, -3, -8,-17, -6, 2, -3, 4, -4, -6, -4, -9; /M: SY='T'; M= 1,-12,-19,-15,-10, -7,-18,-16, -1,-13, -5, -4, -8,-10, -8,-12, 2, 4, 0,-25, -9,-10; /M: M= -5, -4,-23, -7, -7,-10,-13,-10,-11, -6, -9, -8, 0, -9, -8, -4, -2, -1,-11,-23, -7, -9; /I: MD=-15; /M: SY='L'; M= -6,-17,-14,-17,-13, 2,-15,-11, 10,-14, 17, 8,-15,-18,-12, -8,-14, -6, 7,-11, 1,-13; D=-2; /I: I=-4; MI=0; MD=-15; IM=0; DM=-15; /M: SY='P'; M= -5, -2,-18, 1, 1,-12, -7, -5,-10, -4,-12, -8, -3, 7, 0, -7, -1, -3,-12,-13, -5, -1; D=-2; /I: DM=-15; /M: SY='D'; M= -4, 5,-19, 6, 4,-18,-13, -8,-11, -3,-12,-10, 3, -6, 0, -5, 3, 2,-10,-25,-12, 1; D=-2; /I: DM=-15; /M: SY='N'; M= -9, -2,-21, -5, -5, -3, -7, -7,-11, -7, -9, -6, 1, -5, -8, -8, -5, -4,-13,-17, -5, -7; D=-2; /I: DM=-15; /M: SY='G'; M= -7, -1,-25, 0, -2,-20, 15, -4,-25, -4,-21,-14, 2,-10, -6, -4, -2,-11,-21,-20,-13, -5; D=-2; /I: DM=-15; /M: SY='N'; M=-11, 7,-21, 4, 0,-20,-13, -2,-16, 5,-19,-11, 11,-17, -2, 2, -4, -8,-16,-27, -9, -2; /M: M= -6, -4,-25, -5, 0,-14, -6, -1,-19, -3,-18,-11, 0, -5, -5, -6, -2, -7,-17,-24, -9, -3; /M: SY='K'; M= -7, -5,-24, -6, 5,-21,-21, -4,-16, 15,-17, -6, -3,-13, 6, 12, -3, 0,-10,-24, -9, 4; /M: SY='P'; M= -2,-12,-27,-10, 0,-21,-17,-16,-16, 2,-18,-12,-12, 14, -3, -6, -4, -4,-15,-14,-14, -2; /M: SY='V'; M= -4,-19,-12,-23,-20, -6,-26,-11, 13,-14, 2, 9,-16,-24,-13,-14,-11, -6, 18,-23, -2,-18; /M: SY='R'; M=-18, -7,-31,-11, -7, -9,-17, -5,-25, 13,-21,-13, 3,-22, 0, 34,-12,-12,-22, 9, -2, -5; /M: SY='V'; M= 1,-27, -5,-31,-26, -2,-29,-27, 23,-23, 14, 9,-26,-27,-25,-22,-13, -4, 31,-27, -9,-26; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='D'; M=-10, 19,-25, 23, 11,-26,-12, 4,-28, 9,-27,-18, 14,-12, 3, 1, 4, -2,-22,-31,-11, 7; /M: SY='D'; M= -8, 2,-24, 5, -1,-18,-19, -4, -9,-10, -9, -8, -1, -8, -6,-11, -3, -2, -8,-30,-11, -5; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='Y'; M=-13,-15,-23,-20,-15, 18,-24, -1, -2,-14, 1, 1, -9,-23,-11, -8, -9, -4, -5, -7, 19,-14; /M: SY='E'; M= -2, 6,-23, 10, 14,-24,-17,-10,-17, 6,-17,-13, -1,-11, 0, -3, -1, -4, -9,-29,-16, 7; /M: SY='Q'; M= -4, 1,-23, 0, 6,-22,-15, 0,-17, 4,-14, -4, 2,-14, 11, 8, 0, -2,-16,-26,-11, 7; /M: SY='M'; M=-10,-16,-24,-18, -9, -6,-23, 0, -2, -3, 8, 12,-14,-22, 1, 3,-16,-10, -5,-16, 4, -5; /M: SY='E'; M= -9, 7,-26, 10, 15,-20,-16, 6,-22, 0,-20,-14, 4, -5, 7, -4, 0, -7,-22,-26, -8, 10; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
Total number of hits | 170 in 165 different sequences |
Number of true positive hits | 169 in 164 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 1 |
Number of false negative sequences | 23 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 99.41 % |
Recall (true positives / (true positives + false negatives)) | 88.02 % |
Comments [info]
Matrix type [info] | protein_domain |
Scaling database [info] | reversed |
Author [info] | K_Hofmann |
Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
Maximum number of repetitions [info] | 2 |
Feature key [info] | ZN_FING |
Feature description [info] | FYVE-type |
Version [info] | 5 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
164 sequences
ADCA_DICDI (Q54CH1 ), ADCD_DICDI (Q54LD5 ), ANCHR_HUMAN (Q96K21 ), ANCHR_MOUSE (Q9DAZ9 ), ANFY1_HUMAN (Q9P2R3 ), ANFY1_MOUSE (Q810B6 ), EEA1_HUMAN (Q15075 ), EEA1_MOUSE (Q8BL66 ), FAB1A_ARATH (Q0WUR5 ), FAB1B_ARATH (Q9LUM0 ), FAB1_SCHPO (O59722 ), FAB1_YEAST (P34756 ), FGD1_HUMAN (P98174 ), FGD1_MOUSE (P52734 ), FGD2_HUMAN (Q7Z6J4 ), FGD2_MOUSE (Q8BY35 ), FGD3_HUMAN (Q5JSP0 ), FGD3_MOUSE (O88842 ), FGD3_PONAB (Q5R5T1 ), FGD4_HUMAN (Q96M96 ), FGD4_MOUSE (Q91ZT5 ), FGD4_RAT (O88387 ), FGD5_HUMAN (Q6ZNL6 ), FGD5_MOUSE (Q80UZ0 ), FGD6_HUMAN (Q6ZV73 ), FGD6_MOUSE (Q69ZL1 ), FGDH_CAEEL (X5LX76 ), FREE1_ARATH (Q9ASS2 ), FYCO1_HUMAN (Q9BQS8 ), FYCO1_MOUSE (Q8VDC1 ), FYV1_DICDI (B0G126 ), FYV1_DROME (O96838 ), FYV1_HUMAN (Q9Y2I7 ), FYV1_MOUSE (Q9Z1T6 ), HGS_BOVIN (Q0V8S0 ), HGS_HUMAN (O14964 ), HGS_MOUSE (Q99LI8 ), HGS_RAT (Q9JJ50 ), HRS_DROME (Q960X8 ), LST2_AEDAE (Q17AN2 ), LST2_ANOGA (Q7QAJ2 ), LST2_BRUMA (A8QCE4 ), LST2_CAEBR (A8XJZ8 ), LST2_CAEEL (Q9TZD0 ), LST2_CULQU (B0WAQ0 ), LST2_DANRE (A0JMD2 ), LST2_DROAN (B3MT31 ), LST2_DROER (B3P851 ), LST2_DROGR (B4JHI7 ), LST2_DROME (Q9VB70 ), LST2_DROMO (B4K982 ), LST2_DROPE (B4G2G5 ), LST2_DROSE (B4IC49 ), LST2_DROVI (B4M140 ), LST2_DROWI (B4NFJ7 ), LST2_DROYA (B4PRU6 ), LST2_HUMAN (Q9HCC9 ), LST2_MOUSE (Q6ZPK7 ), LST2_XENTR (Q0P4S0 ), MTMR3_CAEEL (Q22712 ), MTMR3_HUMAN (Q13615 ), MTMR3_MOUSE (Q8K296 ), MTMR3_RAT (Q5PQT2 ), MTMR4_HUMAN (Q9NYA4 ), MTMR4_MOUSE (Q91XS1 ), MTMR4_XENLA (Q7ZXF1 ), PEP7_SCHPO (O13786 ), PEP7_YEAST (P32609 ), PIB1_YEAST (Q06651 ), PIB2_SCHPO (Q9Y7M3 ), PIB2_YEAST (P53191 ), PKHF1_DROME (O76902 ), PKHF1_HUMAN (Q96S99 ), PKHF1_MOUSE (Q3TB82 ), PKHF1_RAT (Q68FU1 ), PKHF2_CHICK (Q5ZLY5 ), PKHF2_DANRE (Q7ZUV1 ), PKHF2_HUMAN (Q9H8W4 ), PKHF2_MOUSE (Q91WB4 ), PRAF1_ARATH (Q947D2 ), RBF1_CAEEL (P41885 ), RBNS5_HUMAN (Q9H1K0 ), RBNS5_MOUSE (Q80Y56 ), RIMS1_HUMAN (Q86UR5 ), RIMS1_MOUSE (Q99NE5 ), RIMS1_RAT (Q9JIR4 ), RIMS2_HUMAN (Q9UQ26 ), RIMS2_MOUSE (Q9EQZ7 ), RIMS2_RAT (Q9JIS1 ), RIM_CAEEL (Q22366 ), RP3A_BOVIN (Q06846 ), RP3A_HUMAN (Q9Y2J0 ), RP3A_MOUSE (P47708 ), RP3A_RAT (P47709 ), RPH3L_BOVIN (Q58D79 ), RPH3L_HUMAN (Q9UNE2 ), RPH3L_MOUSE (Q768S4 ), RPH3L_RAT (O54880 ), RUFY1_HUMAN (Q96T51 ), RUFY1_MOUSE (Q8BIJ7 ), RUFY2_HUMAN (Q8WXA3 ), RUFY2_MOUSE (Q8R4C2 ), RUFY2_PONAB (Q5R5R4 ), RUFY4_HUMAN (Q6ZNE9 ), RUFY4_MOUSE (Q3TYX8 ), SLOB1_DICDI (Q54TC3 ), UGT52_DICDI (Q54IL5 ), UPA1_USTMA (A0A0D1E015), VPS27_ASHGO (Q755J9 ), VPS27_ASPCL (A1CEK1 ), VPS27_ASPFU (Q4WHN8 ), VPS27_ASPNC (A2QWA2 ), VPS27_ASPTN (Q0CJV3 ), VPS27_CANAL (Q5ABD9 ), VPS27_CANGA (Q6FQJ1 ), VPS27_CHAGB (Q2GS33 ), VPS27_CRYNB (P0CS27 ), VPS27_CRYNJ (P0CS26 ), VPS27_DEBHA (Q6BSD6 ), VPS27_EMENI (Q5BBK9 ), VPS27_KLULA (Q6CL17 ), VPS27_MAGO7 (A4QTV1 ), VPS27_NEOFI (A1DFP5 ), VPS27_NEUCR (Q7RZJ2 ), VPS27_PHANO (Q0U4Z8 ), VPS27_PICST (A3LX75 ), VPS27_SCHPO (O13821 ), VPS27_USTMA (Q4P7Q1 ), VPS27_YARLI (Q6CFT4 ), VPS27_YEAST (P40343 ), WDFY1_BOVIN (Q2KIY3 ), WDFY1_HUMAN (Q8IWB7 ), WDFY1_MOUSE (E9Q4P1 ), WDFY2_CAEBR (A8XXC7 ), WDFY2_CAEEL (Q18964 ), WDFY2_HUMAN (Q96P53 ), WDFY2_MOUSE (Q8BUB4 ), WDFY3_HUMAN (Q8IZQ1 ), WDFY3_MOUSE (Q6VNB8 ), YL615_MIMIV (Q5UR69 ), YO45_SCHPO (Q9HGN5 ), YOTB_CAEEL (P34657 ), ZFY16_HUMAN (Q7Z3T8 ), ZFY16_MOUSE (Q80U44 ), ZFY21_BOVIN (Q05B78 ), ZFY21_HUMAN (Q9BQ24 ), ZFY21_MOUSE (Q8VCM3 ), ZFY21_RAT (D3ZVP7 ), ZFY26_AILME (D2H5P6 ), ZFY26_BOVIN (E1BLZ4 ), ZFY26_DROME (Q9VGP1 ), ZFY26_HUMAN (Q68DK2 ), ZFY26_MOUSE (Q5DU37 ), ZFY26_RAT (D4A8G9 ), ZFY27_BOVIN (Q5BIM5 ), ZFY27_CHICK (Q5ZL36 ), ZFY27_HUMAN (Q5T4F4 ), ZFY27_MOUSE (Q3TXX3 ), ZFY27_PONAB (Q5R7K2 ), ZFY27_RAT (Q6P7B7 ), ZFYV1_HUMAN (Q9HBF4 ), ZFYV1_MOUSE (Q810J8 ), ZFYV1_PONAB (Q5RFL4 ), ZFYV9_HUMAN (O95405 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
23 sequences
BPH1_SCHPO (Q7LKZ7 ), MELPH_FELCA (M3WHG5 ), MELPH_HUMAN (Q9BV36 ), MELPH_MOUSE (Q91V27 ), MTMR6_CAEEL (G5ED68 ), MYRIP_DANRE (A8T6P4 ), MYRIP_HUMAN (Q8NFW9 ), MYRIP_MOUSE (Q8K3I4 ), MYRIP_RAT (Q7TNY7 ), RFFL_HUMAN (Q8WZ73 ), RFFL_MOUSE (Q6ZQM0 ), RFFL_RAT (Q8CIN9 ), RNF34_BOVIN (Q5E9J6 ), RNF34_HUMAN (Q969K3 ), RNF34_MOUSE (Q99KR6 ), RNF34_PONAB (Q5NVC7 ), RNF34_RAT (Q6AYH3 ), SYTL4_HUMAN (Q96C24 ), SYTL4_MOUSE (Q9R0Q1 ), SYTL4_RAT (Q8VHQ7 ), SYTL5_HUMAN (Q8TDW5 ), SYTL5_MOUSE (Q80T23 ), SYTL5_RAT (Q812E4 )» more |
UniProtKB/Swiss-Prot False positive sequences |
1 sequence
ZNF12_MOUSE (Q7TSI0 ) |
PDB [Detailed view] |
21 PDB
1DVP; 1HYI; 1HYJ; 1JOC; 1VFY; 1WFK; 1X4U; 1Y02; 1ZBD; 2A20; 2CJS; 2CSZ; 2YQM; 2YW8; 2ZET; 3MPX; 3T7L; 3ZYQ; 4AVX; 5X6T; 6W9N » more |