PROSITE entry PS50256
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General information about the entry
| Entry name [info] | PIR_REPEAT_2 |
| Accession [info] | PS50256 |
| Entry type [info] | MATRIX |
| Date [info] |
01-DEC-2001 CREATED;
10-MAY-2017 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00718 |
| Associated ProRule [info] | PRU00149 |
Name and characterization of the entry
| Description [info] | Yeast PIR proteins repeats profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=19; /DISJOINT: DEFINITION=PROTECT; N1=2; N2=18; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.2710000; R2=0.0188288; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=633.1967163; R2=0.6803279; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=438; H_SCORE=931; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=331; H_SCORE=858; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: D=-20; I=-20; B1=-50; E1=-50; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='A'; M= 15, -5,-16,-10, -6,-19,-11,-16,-15, -1,-15,-11, -4, -6, -6, -3, 9, 11, -6,-26,-16, -6; /M: SY='A'; M= 14, 1,-16, -5, -3,-21, -8, 2,-17, -6,-18,-11, 4,-12, 0, -8, 13, 7,-11,-28,-13, -2; /M: SY='A'; M= 30,-15,-15,-22,-14,-17, -5,-22, -2,-14, -8, -6,-14, -6,-15,-21, 2, -3, 6,-22,-18,-15; /M: SY='V'; M= 14,-23,-16,-30,-23, -7,-23,-27, 22,-20, 6, 6,-20,-20,-20,-23, -6, -3, 27,-24,-10,-23; /M: SY='S'; M= 12, -3,-11, -4, -3,-14, -2,-12,-18,-11,-26,-18, 6,-11, -3,-12, 33, 16, -8,-35,-17, -3; /M: SY='Q'; M= -9, -3,-28, -3, 15,-36,-21, 6,-15, 7,-17, 1, -3,-12, 51, 7, -1, -9,-22,-21,-10, 33; /M: SY='I'; M= -7,-27,-26,-35,-27, -2,-35,-28, 41,-27, 14, 15,-18,-20,-19,-27,-13, -6, 28,-23, -3,-27; /M: SY='G'; M= -1, -2,-20, -5, -9,-21, 15, -7,-26, -9,-24,-16, 7,-15, -7, -4, 13, 7,-18,-29,-18, -9; /M: SY='D'; M=-20, 50,-30, 70, 20,-40,-10, 0,-40, 0,-30,-30, 20,-10, 0,-10, 0,-10,-30,-40,-20, 10; /M: SY='G'; M= 0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20, 0,-20,-20,-20, 0,-20,-30,-20,-30,-20; /M: SY='Q'; M=-10, 0,-30, 0, 20,-40,-20, 10,-20, 10,-20, 0, 0,-10, 60, 10, 0,-10,-30,-20,-10, 40; /M: SY='V'; M= -5,-30,-19,-34,-29, 1,-34,-29, 38,-25, 17, 15,-26,-26,-25,-24,-16, -5, 39,-25, -5,-29; /M: SY='Q'; M=-10, -2,-29, -2, 18,-37,-21, 8,-18, 8,-16, 1, -2,-11, 55, 8, -2,-10,-28,-20, -9, 36; /M: SY='A'; M= 38,-15,-11,-23,-15,-15, -8,-22, 1,-13, -5, -5,-14,-14,-14,-21, 5, -1, 10,-22,-17,-15; /M: SY='T'; M= 4, -2,-12,-10, -9,-12,-17,-20,-11,-10,-12,-11, -2, -4,-10,-11, 18, 41, -2,-30,-12,-10; /M: SY='T'; M= 3, 0,-14, -9, -7,-14,-16,-17,-11, -3,-14,-10, 2,-11, -7, -6, 14, 29, -3,-28,-12, -7; /M: SY='S'; M= 8, -2,-18, -6, 3,-22,-13,-11,-17, 6,-18,-10, -1,-10, 5, -1, 10, 9,-11,-26,-14, 4; /M: SY='T'; M= 1, -8,-16,-13,-10,-13,-16,-20, -9, -2,-12, -8, -7,-15,-10, -6, 7, 20, 2,-21,-11,-10; /M: SY='T'; M= 4, -6,-16,-11, -8,-11,-15,-14, -8, -7, -8, -7, -3,-11, -8, -9, 7, 14, -3,-25, -8, -9; /I: E1=0;» more |
Numerical results [info]
| Total number of hits | 116 in 23 different sequences |
| Number of true positive hits | 116 in 23 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 13 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20_shuffled |
| Author [info] | K_Hofmann |
| Feature key [info] | REPEAT |
| Feature description [info] | PIR1/2/3 repeat |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
23 sequences
ANS1_YEAST (P38832), CIS3_YEAS6 (B5VL27), CIS3_YEAS7 (A6ZQH4), CIS3_YEAST (P47001), CWP1_YEAST (P28319), CWP2_YEAST (P43497), HS150_YEAS1 (B3LPW4), HS150_YEAS6 (B5VL26), HS150_YEAS7 (A6ZQH3), HS150_YEAST (P32478), PIR1_CANAL (Q59SF7), PIR1_YEAS1 (B3LQU0), PIR1_YEAS7 (A6ZZG0), PIR1_YEAST (Q03178), PIR3_YEAS1 (B3LQU1), PIR3_YEAS7 (A6ZZG1), PIR3_YEAST (Q03180), PIR5_YEAS1 (B3LPW3), PIR5_YEAS6 (B5VL25), PIR5_YEAS7 (A6ZQH2), PIR5_YEAST (P46999), TIR1_YEAST (P10863), TIR2_YEAST (P33890)» more
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