PROSITE entry PS50818
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| PURL [info] | https://purl.expasy.org/prosite/signature/PS50818 |
| Entry name [info] | INTEIN_C_TER |
| Accession [info] | PS50818 |
| Entry type [info] | MATRIX |
| Date [info] |
01-MAY-2002 CREATED;
10-MAY-2017 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00687 |
Name and characterization of the entry
| Description [info] | Intein C-terminal splicing motif profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=22; /DISJOINT: DEFINITION=PROTECT; N1=3; N2=20; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.8533000; R2=0.0226396; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=656.6232910; R2=0.7982063; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=290; H_SCORE=888; N_SCORE=7.4; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=250; H_SCORE=856; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-8; D=-20; I=-20; B0=-60; B1=-60; E0=-60; E1=-60; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B0=0; B1=0; BI=-105; BD=-105; /M: SY='Y'; M=-15,-11,-29, -9, -6, 3,-23, -5,-14, -1,-13,-10,-10, -2, -9, 0,-12, -8,-15, -5, 12, -9; /M: SY='V'; M= 1,-25,-13,-27,-26, -1,-24,-27, 20,-18, 7, 6,-24,-26,-25,-17, -8, 1, 34,-27, -9,-26; /M: SY='Y'; M=-19,-17,-28,-18,-17, 29,-28, 9, -2,-11, -1, -1,-16,-27,-11, -9,-18,-10, -9, 17, 55,-17; /M: SY='D'; M=-13, 27, -1, 33, 5,-29,-12, -6,-30, -8,-25,-23, 15,-17, -6,-12, 4, -3,-22,-41,-21, -1; /M: SY='L'; M= -6,-25,-20,-27,-22, 3,-30,-24, 23,-25, 26, 13,-24,-25,-21,-21,-18, -4, 20,-23, -3,-23; /M: SY='T'; M= -1, 1,-18, -1, 4,-16,-10,-10,-14, -7,-16,-13, 3,-12, -3, -9, 11, 12, -9,-28,-11, 0; /M: SY='V'; M= 3,-18, -3,-21,-22, -8,-21,-25, 10,-18, 1, 0,-17,-24,-22,-19, -4, 4, 23,-30,-13,-22; /I: I=-5; MD=-27; /M: SY='E'; M=-10, 0,-25, 7, 15,-17,-19, -7,-21, 2,-19,-15, -5, 11, 0, -6, -6, -9,-21,-21, -9, 6; D=-5; /I: I=-5; MD=-27; /M: SY='N'; M= -2, 10,-17, 7, 0,-18, 5, -1,-18, -2,-18,-12, 13,-11, -3, -3, 2, -3,-16,-22,-13, -2; D=-5; /I: I=-5; MI=-27; MD=-27; IM=-27; DM=-27; /M: SY='H'; M=-12, 0,-26, 1, 5,-22, -6, 42,-25, -8,-18, -6, 5,-16, 7, -4, -4,-13,-24,-27, 0, 4; D=-5; /I: I=-5; DM=-27; /M: SY='N'; M= -5, 14,-19, 2, -5,-10, -8, -2,-13, -4,-15,-11, 27,-20, -5, -2, 3, 0,-17,-30,-13, -5; /M: SY='F'; M=-16,-25,-24,-30,-25, 40,-25, -8, 5,-22, 9, 3,-20,-29,-25,-17,-20,-10, 0, 8, 37,-25; /I: I=-6; MD=-32; /M: SY='V'; M= -6,-27,-18,-30,-25, 7,-30,-20, 24,-24, 18, 12,-23,-26,-23,-20,-16, -4, 25,-21, -1,-25; D=-6; /I: I=-6; MI=-32; IM=-32; DM=-32; /M: SY='A'; M= 15,-14,-14,-20,-15, -7,-14,-20, 1,-15, -2, -3,-12,-17,-13,-17, 4, 8, 8,-23,-11,-14; /I: I=-5; MD=-25; /M: SY='N'; M= -1, 8,-22, 1, -3,-17, 1, -4,-18, -4,-20,-14, 15,-15, -5, -3, 1, -6,-17,-22,-12, -5; D=-5; /I: I=-5; MD=-25; /M: SY='G'; M= -5, -1,-21, -5, -7,-13, 14, -8,-19, -9,-17,-12, 6,-16, -7, -8, 2, -5,-17,-19,-11, -7; D=-5; /I: I=-5; MI=0; MD=-25; IM=0; DM=-25; /M: SY='I'; M= -6,-28,-15,-34,-27, 9,-30,-27, 27,-27, 16, 11,-22,-25,-24,-25,-17, -8, 22,-20, -1,-27; /M: SY='V'; M= -6,-28,-20,-31,-25, 8,-30,-24, 22,-23, 16, 11,-25,-23,-24,-21,-17, -5, 23,-15, 0,-25; /M: SY='V'; M= 5,-15, -9,-20,-18, -7,-21,-23, 7,-16, 1, -1,-14,-20,-18,-17, 3, 14, 18,-29,-11,-18; /M: SY='H'; M=-12, -3,-28, -3, -3,-20, -5, 62,-30, -7,-21, -5, 6,-19, 3, -2, -7,-17,-27,-26, 7, -3; /M: SY='N'; M=-10, 35,-21, 17, 3,-23, -3, 10,-20, 1,-29,-17, 52,-19, 8, 1, 9, -1,-30,-37,-19, 5; /M: SY='C'; M= -3,-11, 63,-18,-18,-18,-20,-23,-24,-21,-21,-18, -8,-27,-18,-21, 9, 8, -8,-44,-24,-18; /I: E0=0; E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 111 in 98 different sequences |
| Number of true positive hits | 111 in 98 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 8 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 93.28 % |
Comments [info]
| Taxonomic range [info] | Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 3 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
98 sequences
AATA_PYRAB (Q9UXU7), AATA_PYRFU (Q8U4A6), AATA_PYRHO (O57728), AATA_THEAC (Q9P997), AATA_THEVO (Q97CQ0), AATB_METKA (Q8TUT0), DNAB_GUITH (O78411), DNAB_MYCBO (P59966), DNAB_MYCTO (P9WMR2), DNAB_MYCTU (P9WMR3), DNAB_NEOYE (Q1XDF3), DNAB_NOSS1 (Q8YZA1), DNAB_PORPU (P51333), DNAB_RHOMR (O30477), DNAB_SYNY3 (Q55418), DP2L_METHJ (Q2FSF9), DP2L_METMJ (A3CXE7), DP2L_PYRAB (Q9V2F4), DP2L_PYRHO (O57861), DP2L_THEKO (Q5JET0), DPO3A_SYNY3 (P74750), DPOL_BPAPS (Q9T1Q3), DPOL_CEV01 (A7U6F1), DPOL_METJA (Q58295), DPOL_MIMIV (Q5UQR0), DPOL_PYRHO (O59610), DPOL_PYRSD (Q51334), DPOL_THEAG (O33845), DPOL_THEFM (P74918), DPOL_THEG8 (Q9HH84), DPOL_THEHY (Q9HH05), DPOL_THEKO (P77933), DPOL_THELI (P30317), EF2_METKA (Q8TXJ4), GLMS_METJA (Q58815), GYRA_MYCFV (Q49166), GYRA_MYCGO (Q49467), GYRA_MYCKA (Q49608), GYRA_MYCLE (Q57532), GYRA_MYCMA (O33149), GYRA_MYCXE (P72065), GYRB_SYNY3 (P77966), HELS_METJA (Q58524), HELS_THEKO (Q5JGV6), HOLA_MYCPN (Q50362), IF2P_METJA (Q57710), IF2P_PYRAB (Q9UZK7), IF2P_PYRFU (Q8U1R8), IF2P_PYRHO (O58822), IF2P_THEKO (Q5JGR9), LONB_PYRAB (Q9UYC6), LONB_PYRHO (O58221), NDRZ_PYRFU (E7FHX6), NRDEB_BACSU (O31875), NRDEB_BPSPB (O64173), PPSA_METJA (Q57962), RADA_PYRHO (O58001), RADA_THEKO (Q5JET4), RECA_MYCBO (P0A5U5), RECA_MYCCI (Q9F417), RECA_MYCFA (Q9F416), RECA_MYCFV (Q9F415), RECA_MYCGS (Q9F414), RECA_MYCLE (P35901), RECA_MYCSH (Q9F410), RECA_MYCT3 (Q9F407), RECA_MYCTO (P9WHJ2), RECA_MYCTU (P9WHJ3), RFCS_HALWD (Q18E75), RFCS_METJA (Q58817), RFCS_METKA (Q8TZC4), RFCS_PYRAB (Q9V2G4), RFCS_PYRFU (Q8U4J3), RFCS_PYRHO (O57852), RFCS_THEKO (Q5JHP2), RGYR_METJA (Q58907), RGYR_PYRHO (O58530), RGYR_THEKO (Q6F598), RIR2_AQUAE (O67475), RPC2_DICDI (Q54IZ9), RPO1C_METJA (Q58446), RPO1N_METJA (Q58445), RTCB_METJA (Q58095), RTCB_METKA (Q8TUS2), RTCB_PYRAB (Q9V168), RTCB_PYRFU (Q8U0H4), RTCB_PYRHO (O59245), TF2B_METJA (Q58192), TOP1_PYRFU (O73954), VATA_YEAST (P17255), Y043_METJA (Q60348), Y1054_METJA (Q58454), Y1461_MYCTO (P9WFP6), Y1461_MYCTU (P9WFP7), Y1496_MYCBO (P67126), Y593_MYCLE (Q49689), Y781_METJA (Q58191), Y832_METJA (Q58242)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
8 sequences
CLPP_CHLMO (P42379), DNAB_MYCIT (Q9F5P4), DNAB_MYCLE (P46394), DP2L_HALMA (Q5UZ40), DP2L_HALSA (Q9HMX8), DP2L_HALWD (Q18ER3), RIR1_IIV6 (O55716), VATA_CANTR (P38078)» more |
| PDB [Detailed view] |
28 PDB
1AM2; 1DQ3; 1EF0; 1MI8; 2CW7; 2CW8; 2IMZ; 2IN0; 2IN9; 2L8L; 2LQM; 3IFJ; 3IGD; 4E2T; 4E2U; 4O1S; 4OZ6; 5BKH; 5I0A; 5K08; 5O9J; 5OL1; 5OL5; 6FRE; 6FRG; 6FRH; 7QST; 9COP » more |