PROSITE entry PS51008
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PURL: https://purl.expasy.org/prosite/signature/PS51008
Direct ScanProsite submission
General information about the entry
| Entry name [info] | MULTIHEME_CYTC |
| Accession [info] | PS51008 |
| Entry type [info] | MATRIX |
| Date [info] |
01-AUG-2004 CREATED;
01-AUG-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00169 |
Name and characterization of the entry
| Description [info] | Multiheme cytochrome c family profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=15; TOPOLOGY=CIRCULAR; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=15; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8475713; R2=0.0151062; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=375; N_SCORE=7.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=275; N_SCORE=6.0; MODE=1; TEXT='RR'; /DEFAULT: M0=-9; D=-20; I=-20; B0=-200; B1=-200; E0=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B0=0; B1=0; E0=0; E1=0; BI=-105; BD=-105; IE=-105; DE=-105; /M: SY='N'; M= -3, -2, -70, -4, -1, -19, -18, -10, -15, -2, -14, -9, 1, -11, -2, -4, -1, -4, -12, -24, -13, -2; /I: I0=0; I=-1; /M: SY='N'; M= -8, 0, -70, -1, -2, -16, -12, -80, -16, -1, -15, -10, 0, -7, -2, -1, -1, 0, -14, -23, -10, -3; /M: SY='E'; M= -4, 2, -90, 3, 5, -24, -5, -30, -20, -3, -20, -13, 2, -3, 2, -4, 2, -5, -18, -28, -17, 2; /M: SY='A'; M= 1, -8, -70, -8, -1, -19, -17, -30, -8, 1, -9, -5, -5, -10, -3, -3, -4, -4, -3, -25, -13, -3; /M: SY='S'; M= -2, 1, -70, -2, -4, -5, -3, -30, -17, -8, -16, -12, 3, -15, -6, 0, 6, 6, -12, -24, -12, -5; /M: SY='C'; M= *, *, 120, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *; /M: SY='A'; M= 6, -14, -80, -19, -14, -10, -14, -55, 1, -11, -3, -1, -11, -48, -10, -9, -1, 1, 5, -19, -7, -13; /M: SY='S'; M= 2, 8, -80, 7, 1, -21, 0, -58, -20, -6, -20, -15, 7, -42, -1, -9, 11, 7, -15, -29, -14, 0; /M: SY='C'; M= *, *, 120, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *; /M: SY='H'; M= *, *, *, *, *, *, *, 120, *, *, *, *, *, *, *, *, *, *, *, *, *, *; /M: SY='N'; M= -1, -1, -70, -4, -4, -18, -25, -10, -13, -3, -14, -7, 3, -16, -10, -4, 3, 0, -4, -28, -14, -3; /M: SY='E'; M= -5, -1, -70, 0, 2, -19, -9, -30, -16, -4, -16, -10, -2, -1, -2, -7, -2, -6, -15, -25, -14, -1; /M: SY='E'; M= -6, -2, -70, -2, 3, -19, -25, -30, -15, -1, -15, -9, -2, -5, 2, -4, -3, -5, -15, -23, -8, 1; /M: SY='P'; M= -3, 1, -70, 2, 1, -17, -8, -30, -20, -5, -20, -15, 0, 3, -6, -9, 2, -2, -16, -26, -15, -3; /I: I0=0; I=-1; /M: SY='E'; M= -1, 0,-110, 1, 6, -20, -10, -30, -19, -1, -18, -11, -1, -4, 4, -5, 0, -5, -17, -24, -12, 4;» more |
Numerical results [info]
| Total number of hits | 167 in 159 different sequences |
| Number of true positive hits | 167 in 159 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 5 |
| Number of 'partial' sequences | 3 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 97.09 % |
Comments [info]
| Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 3 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | N_Hulo |
| Version [info] | 2 |
Cross-references [info]