PROSITE entry PS51008
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General information about the entry
Entry name [info] | MULTIHEME_CYTC |
Accession [info] | PS51008 |
Entry type [info] | MATRIX |
Date [info] |
01-AUG-2004 CREATED;
01-AUG-2004 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00169 |
Name and characterization of the entry
Description [info] | Multiheme cytochrome c family profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=15; TOPOLOGY=CIRCULAR; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=15; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8475713; R2=0.0151062; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=375; N_SCORE=7.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=275; N_SCORE=6.0; MODE=1; TEXT='RR'; /DEFAULT: M0=-9; D=-20; I=-20; B0=-200; B1=-200; E0=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B0=0; B1=0; E0=0; E1=0; BI=-105; BD=-105; IE=-105; DE=-105; /M: SY='N'; M= -3, -2, -70, -4, -1, -19, -18, -10, -15, -2, -14, -9, 1, -11, -2, -4, -1, -4, -12, -24, -13, -2; /I: I0=0; I=-1; /M: SY='N'; M= -8, 0, -70, -1, -2, -16, -12, -80, -16, -1, -15, -10, 0, -7, -2, -1, -1, 0, -14, -23, -10, -3; /M: SY='E'; M= -4, 2, -90, 3, 5, -24, -5, -30, -20, -3, -20, -13, 2, -3, 2, -4, 2, -5, -18, -28, -17, 2; /M: SY='A'; M= 1, -8, -70, -8, -1, -19, -17, -30, -8, 1, -9, -5, -5, -10, -3, -3, -4, -4, -3, -25, -13, -3; /M: SY='S'; M= -2, 1, -70, -2, -4, -5, -3, -30, -17, -8, -16, -12, 3, -15, -6, 0, 6, 6, -12, -24, -12, -5; /M: SY='C'; M= *, *, 120, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *; /M: SY='A'; M= 6, -14, -80, -19, -14, -10, -14, -55, 1, -11, -3, -1, -11, -48, -10, -9, -1, 1, 5, -19, -7, -13; /M: SY='S'; M= 2, 8, -80, 7, 1, -21, 0, -58, -20, -6, -20, -15, 7, -42, -1, -9, 11, 7, -15, -29, -14, 0; /M: SY='C'; M= *, *, 120, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *; /M: SY='H'; M= *, *, *, *, *, *, *, 120, *, *, *, *, *, *, *, *, *, *, *, *, *, *; /M: SY='N'; M= -1, -1, -70, -4, -4, -18, -25, -10, -13, -3, -14, -7, 3, -16, -10, -4, 3, 0, -4, -28, -14, -3; /M: SY='E'; M= -5, -1, -70, 0, 2, -19, -9, -30, -16, -4, -16, -10, -2, -1, -2, -7, -2, -6, -15, -25, -14, -1; /M: SY='E'; M= -6, -2, -70, -2, 3, -19, -25, -30, -15, -1, -15, -9, -2, -5, 2, -4, -3, -5, -15, -23, -8, 1; /M: SY='P'; M= -3, 1, -70, 2, 1, -17, -8, -30, -20, -5, -20, -15, 0, 3, -6, -9, 2, -2, -16, -26, -15, -3; /I: I0=0; I=-1; /M: SY='E'; M= -1, 0,-110, 1, 6, -20, -10, -30, -19, -1, -18, -11, -1, -4, 4, -5, 0, -5, -17, -24, -12, 4;» more |
Numerical results [info]
Total number of hits | 165 in 157 different sequences |
Number of true positive hits | 165 in 157 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 5 |
Number of 'partial' sequences | 3 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 97.06 % |
Comments [info]
Matrix type [info] | protein_domain |
Scaling database [info] | window20 |
Author [info] | N_Hulo |
Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 3 |
Version [info] | 2 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
157 sequences
C554_CHLAA (P33325), C554_NITEU (Q57142), CGR1_EGGLE (C8WLM0), CYC32_DESNO (P38554), CYC32_DESVH (Q727P6), CYC3A_DESAF (P94690), CYC3B_DESAF (P94691), CYC3_DESDE (P00134), CYC3_DESVH (P00131), CYC3_MARSL (P00135), CYC3_MEGG1 (P00133), CYC3_SHEFN (O33731), CYC9_DESDA (Q9RN68), CYCB_GEOSK (D7ALQ0), CYCB_GEOSL (Q749K5), CYCC_GEOSK (D7ALP6), CYCC_GEOSL (Q749L1), CYCR_ALLVD (O82947), CYCR_BLAVI (P07173), CYCR_ROSDO (P26278), CYCR_RUBGI (P51758), CYCR_THETI (D2Z0P5), CYCX_NITEU (Q50926), ENCAP_KUEST (Q1Q6L7), FRD2_SHEFN (Q9Z4P0), FRDA_SHEFN (Q07WU7), FRDA_SHEFR (P0C278), FRDA_SHEON (P83223), HAO_NITEU (Q50925), HDH_KUEST (Q1PW30), HMEE_ARCFU (O29747), HMWC_DESVH (P24092), IMCH_GEOSL (Q747K6), MAME_MAGGM (V6F2B6), MAME_MAGSA (Q2W8Q8), MAMX_MAGGM (V6F2C2), MAMX_MAGSA (Q2W8K4), MAUG_METME (Q50233), MCCA_SHEON (Q8EJI6), MCCA_WOLSU (Q7MSJ8), MTRA_SHEB8 (P0DSN3), MTRC_SHEB8 (P0DSN4), NAPB_AZOBR (Q8VU46), NAPB_BRAJP (Q8KY07), NAPB_CERS4 (Q53177), NAPB_CERSP (O88160), NAPB_CUPNH (P39186), NAPB_ECOLI (P0ABL3), NAPB_HAEIN (P44654), NAPB_NEOGA (Q9Z3W3), NAPB_PARPN (Q56351), NAPB_SHIFL (P0ABL4), NAPB_WOLSU (Q7M963), NAPC_CERS4 (Q53178), NAPC_ECO57 (P0ABL7), NAPC_ECOL6 (P0ABL6), NAPC_ECOLI (P0ABL5), NAPC_HAEIN (P44655), NAPC_PARPN (Q56352), NIRT_STUST (P24038), NIR_THIND (L0DSL2), NRFA_ALIB4 (A8ERP8), NRFA_ALIF1 (Q5E4J7), NRFA_ALIFM (B5FEY0), NRFA_ALISL (B6EH98), NRFA_BACFN (Q5LI95), NRFA_BACFR (Q64ZA7), NRFA_BACTN (Q8A7V7), NRFA_CITK8 (A8AN26), NRFA_DESPS (Q6ARF1), NRFA_DESVH (Q72EF3), NRFA_ECO24 (A7ZUU5), NRFA_ECO27 (B7UPN8), NRFA_ECO45 (B7MJT8), NRFA_ECO55 (B7LB19), NRFA_ECO57 (P0ABL0), NRFA_ECO5E (B5Z1D1), NRFA_ECO7I (B7NSN2), NRFA_ECO81 (B7N2T7), NRFA_ECO8A (B7M7Y3), NRFA_ECOBW (C5A163), NRFA_ECODH (B1XCV6), NRFA_ECOHS (A8A7H1), NRFA_ECOK1 (A1AIR1), NRFA_ECOL5 (Q0T9X8), NRFA_ECOL6 (Q8CVI1), NRFA_ECOLC (B1IUI1), NRFA_ECOLI (P0ABK9), NRFA_ECOLU (B7NG13), NRFA_ECOSE (B6I5T8), NRFA_ECOSM (B1LPN5), NRFA_ECOUT (Q1R3J6), NRFA_EDWI9 (C5BES4), NRFA_HAEDU (Q7VNX8), NRFA_HAEI8 (Q4QLL8), NRFA_HAEIN (P45017), NRFA_MANHA (Q06PW6), NRFA_MANSM (Q65RI4), NRFA_MARSD (C6BYZ2), NRFA_PARD8 (A6L890), NRFA_PASMU (Q9CPL4), NRFA_PECAS (Q6D613), NRFA_PECCP (C6DK80), NRFA_PHOPR (Q6LSQ7), NRFA_PORGI (Q7MTW1), NRFA_SALA4 (B5F2F2), NRFA_SALAR (A9MGK5), NRFA_SALCH (Q57GV0), NRFA_SALDC (B5FRF3), NRFA_SALEP (B5QZA1), NRFA_SALG2 (B5R941), NRFA_SALHS (B4TEB5), NRFA_SALNS (B4T1X2), NRFA_SALPA (Q5PJ02), NRFA_SALPB (A9N1R7), NRFA_SALPC (C0Q554), NRFA_SALPK (B5BJZ8), NRFA_SALSV (B4TRK5), NRFA_SALTI (Q8Z1Q9), NRFA_SALTY (Q8ZKF5), NRFA_SHEAM (A1S3A0), NRFA_SHEFN (Q087T3), NRFA_SHEON (Q8EAC7), NRFA_SHEPC (A4Y382), NRFA_SHESA (A0KSX7), NRFA_SHESH (A8FRR9), NRFA_SHESM (Q0HMH8), NRFA_SHESR (Q0HRB0), NRFA_SHESW (A1RNQ3), NRFA_SHEWM (B1KFU9), NRFA_SHIB3 (B2TXA4), NRFA_SHIBS (Q31TS5), NRFA_SHIFL (Q83P93), NRFA_SHISS (Q3YUR5), NRFA_SULDE (Q9Z4P4), NRFA_VIBPA (Q87ND9), NRFA_VIBVU (Q8D8E5), NRFA_VIBVY (Q7MM23), NRFA_WOLSU (Q9S1E5), NRFB_ECOL6 (P0ABL2), NRFB_ECOLI (P0ABL1), NRFB_HAEIN (P45016), NRFH_DESVH (Q72EF4), NRFH_WOLSU (Q9S1E6), NRHAO_KUEST (P0DV45), PCRC_DECAR (Q47CW8), QRCA_DESVH (P0DOV3), SOXA_PARPN (O33434), TORC_ECO57 (P58359), TORC_ECOLI (P33226), TORY_ECO57 (P58361), TORY_ECOLI (P52005), TORY_HAEIN (P44799), Y1237_ARCFU (O29031), YEBS_ECO57 (P0AD04), YEBS_ECOLI (P0AD03), YFCC_ALLVD (Q06536)» more |
UniProtKB/Swiss-Prot False negative sequences |
5 sequences
CYC31_DESNO (P00136), CYC3_DESAC (P00137), CYC3_DESVM (P00132), CYCX_DESDA (P81040), NAPB_SHEON (Q8EIJ4)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
3 sequences
CYC31_DESVU (P81149), CYC32_DESVU (P81151), CYC35_DESAC (P81079) |
PDB [Detailed view] |
170 PDB
19HC; 1A2I; 1AQE; 1BVB; 1CZJ; 1D4C; 1D4D; 1D4E; 1DXR; 1E39; 1EHJ; 1F22; 1FGJ; 1FS7; 1FS8; 1FS9; 1FT5; 1FT6; 1GU6; 1GWS; 1GX7; 1H21; 1H29; 1HH5; 1IT1; 1J0O; 1J0P; 1JNI; 1JRX; 1JRY; 1JRZ; 1KSS; 1KSU; 1KWJ; 1L3O; 1LJ1; 1LM2; 1M64; 1MDV; 1NEW; 1OFW; 1OFY; 1OGY; 1P2E; 1P2H; 1PRC; 1Q9I; 1QDB; 1QJD; 1QN0; 1QN1; 1QO8; 1R2C; 1VRN; 1WAD; 1WR5; 1Y0P; 2B7R; 2B7S; 2BPN; 2BQ4; 2C1D; 2CDV; 2CTH; 2CVC; 2CY3; 2CYM; 2E80; 2E81; 2EWI; 2EWK; 2EWU; 2FFN; 2I5N; 2J7A; 2JBL; 2K3V; 2OT4; 2OZY; 2P0B; 2PRC; 2RDZ; 2RF7; 2VR0; 2WJM; 2WJN; 2X5U; 2X5V; 2YXC; 2YYW; 2YYX; 2Z47; 2ZO5; 3BNF; 3BNG; 3BNH; 3BNJ; 3CAO; 3CAR; 3D1I; 3D38; 3F29; 3FO3; 3G7F; 3GM6; 3L1T; 3LG1; 3LGQ; 3ML1; 3MMO; 3O5A; 3OWM; 3PRC; 3RKH; 3S7W; 3SCE; 3T6D; 3T6E; 3TOR; 3UBR; 3UU9; 3WMM; 4AC5; 4CAS; 4FAS; 4L38; 4L3X; 4L3Y; 4L3Z; 4N4N; 4N4O; 4Q0T; 4Q17; 4Q1O; 4Q4U; 4Q5B; 4Q5C; 4RKM; 4RKN; 4V8K; 4WJY; 5B5M; 5B5N; 5M7J; 5M7K; 5M7L; 5NJ4; 5O4C; 5O64; 5PRC; 5Y5S; 6ET5; 6HIF; 6M0P; 6M0Q; 6P73; 6PRC; 6QYC; 6R2Q; 6ZHW; 6ZI4; 6ZI5; 6ZI6; 6ZI9; 6ZIA; 6ZID; 7C52; 7PRC; 7Q7P; 7Q7Q » more |