PROSITE logo

PROSITE entry PS51008


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] MULTIHEME_CYTC
Accession [info] PS51008
Entry type [info] MATRIX
Date [info] 01-AUG-2004 CREATED;
01-AUG-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00169

Name and characterization of the entry

Description [info] Multiheme cytochrome c family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=15; TOPOLOGY=CIRCULAR;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=15;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8475713; R2=0.0151062; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=375; N_SCORE=7.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=275; N_SCORE=6.0; MODE=1; TEXT='RR';
/DEFAULT: M0=-9; D=-20; I=-20; B0=-200; B1=-200; E0=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A    B    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y    Z
/I:         B0=0; B1=0; E0=0; E1=0; BI=-105; BD=-105; IE=-105; DE=-105;
/M: SY='N';  M=  -3,  -2, -70,  -4,  -1, -19, -18, -10, -15,  -2, -14,  -9,   1, -11,  -2,  -4,  -1,  -4, -12, -24, -13,  -2;
/I:         I0=0; I=-1;
/M: SY='N';  M=  -8,   0, -70,  -1,  -2, -16, -12, -80, -16,  -1, -15, -10,   0,  -7,  -2,  -1,  -1,   0, -14, -23, -10,  -3;
/M: SY='E';  M=  -4,   2, -90,   3,   5, -24,  -5, -30, -20,  -3, -20, -13,   2,  -3,   2,  -4,   2,  -5, -18, -28, -17,   2;
/M: SY='A';  M=   1,  -8, -70,  -8,  -1, -19, -17, -30,  -8,   1,  -9,  -5,  -5, -10,  -3,  -3,  -4,  -4,  -3, -25, -13,  -3;
/M: SY='S';  M=  -2,   1, -70,  -2,  -4,  -5,  -3, -30, -17,  -8, -16, -12,   3, -15,  -6,   0,   6,   6, -12, -24, -12,  -5;
/M: SY='C';  M=   *,   *, 120,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *;
/M: SY='A';  M=   6, -14, -80, -19, -14, -10, -14, -55,   1, -11,  -3,  -1, -11, -48, -10,  -9,  -1,   1,   5, -19,  -7, -13;
/M: SY='S';  M=   2,   8, -80,   7,   1, -21,   0, -58, -20,  -6, -20, -15,   7, -42,  -1,  -9,  11,   7, -15, -29, -14,   0;
/M: SY='C';  M=   *,   *, 120,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *;
/M: SY='H';  M=   *,   *,   *,   *,   *,   *,   *, 120,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *,   *;
/M: SY='N';  M=  -1,  -1, -70,  -4,  -4, -18, -25, -10, -13,  -3, -14,  -7,   3, -16, -10,  -4,   3,   0,  -4, -28, -14,  -3;
/M: SY='E';  M=  -5,  -1, -70,   0,   2, -19,  -9, -30, -16,  -4, -16, -10,  -2,  -1,  -2,  -7,  -2,  -6, -15, -25, -14,  -1;
/M: SY='E';  M=  -6,  -2, -70,  -2,   3, -19, -25, -30, -15,  -1, -15,  -9,  -2,  -5,   2,  -4,  -3,  -5, -15, -23,  -8,   1;
/M: SY='P';  M=  -3,   1, -70,   2,   1, -17,  -8, -30, -20,  -5, -20, -15,   0,   3,  -6,  -9,   2,  -2, -16, -26, -15,  -3;
/I:         I0=0; I=-1;
/M: SY='E';  M=  -1,   0,-110,   1,   6, -20, -10, -30, -19,  -1, -18, -11,  -1,  -4,   4,  -5,   0,  -5, -17, -24, -12,   4;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 166 in 158 different sequences
Number of true positive hits 166 in 158 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 5
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 97.08 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 3
Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] N_Hulo
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
158 sequences

C554_CHLAA  (P33325), C554_NITEU  (Q57142), CGR1_EGGLE  (C8WLM0), 
CYC32_DESNO (P38554), CYC32_NITV2 (Q727P6), CYC3A_DESAF (P94690), 
CYC3B_DESAF (P94691), CYC3_DESDE  (P00134), CYC3_MARSL  (P00135), 
CYC3_MEGG1  (P00133), CYC3_NITV2  (P00131), CYC3_SHEFN  (O33731), 
CYC9_DESDA  (Q9RN68), CYCB_GEOSK  (D7ALQ0), CYCB_GEOSL  (Q749K5), 
CYCC_GEOSK  (D7ALP6), CYCC_GEOSL  (Q749L1), CYCR_ALLVD  (O82947), 
CYCR_BLAVI  (P07173), CYCR_ROSDO  (P26278), CYCR_RUBGI  (P51758), 
CYCR_THETI  (D2Z0P5), CYCX_NITEU  (Q50926), CYMA_SHEON  (Q8E8S0), 
ENCAP_KUEST (Q1Q6L7), FCCA_SHEFN  (Q07WU7), FCCA_SHEFR  (P0C278), 
FCCA_SHEON  (P83223), HAO_NITEU   (Q50925), HDH_KUEST   (Q1PW30), 
HMEE_ARCFU  (O29747), HMWC_NITV2  (P24092), IFCA_SHEFN  (Q9Z4P0), 
IMCH_GEOSL  (Q747K6), MAME_MAGGM  (V6F2B6), MAME_PARM1  (Q2W8Q8), 
MAMX_MAGGM  (V6F2C2), MAMX_PARM1  (Q2W8K4), MAUG_METME  (Q50233), 
MCCA_SHEON  (Q8EJI6), MCCA_WOLSU  (Q7MSJ8), MTRA_SHEB8  (P0DSN3), 
MTRC_SHEB8  (P0DSN4), NAPB_AZOBR  (Q8VU46), NAPB_BRAJP  (Q8KY07), 
NAPB_CERS4  (Q53177), NAPB_CERSP  (O88160), NAPB_CUPNH  (P39186), 
NAPB_ECOLI  (P0ABL3), NAPB_HAEIN  (P44654), NAPB_NEOGA  (Q9Z3W3), 
NAPB_PARPN  (Q56351), NAPB_SHIFL  (P0ABL4), NAPB_WOLSU  (Q7M963), 
NAPC_CERS4  (Q53178), NAPC_ECO57  (P0ABL7), NAPC_ECOL6  (P0ABL6), 
NAPC_ECOLI  (P0ABL5), NAPC_HAEIN  (P44655), NAPC_PARPN  (Q56352), 
NIRT_STUST  (P24038), NIR_THIND   (L0DSL2), NRFA_ALIB4  (A8ERP8), 
NRFA_ALIF1  (Q5E4J7), NRFA_ALIFM  (B5FEY0), NRFA_ALISL  (B6EH98), 
NRFA_BACFN  (Q5LI95), NRFA_BACFR  (Q64ZA7), NRFA_BACTN  (Q8A7V7), 
NRFA_CITK8  (A8AN26), NRFA_DESPS  (Q6ARF1), NRFA_ECO24  (A7ZUU5), 
NRFA_ECO27  (B7UPN8), NRFA_ECO45  (B7MJT8), NRFA_ECO55  (B7LB19), 
NRFA_ECO57  (P0ABL0), NRFA_ECO5E  (B5Z1D1), NRFA_ECO7I  (B7NSN2), 
NRFA_ECO81  (B7N2T7), NRFA_ECO8A  (B7M7Y3), NRFA_ECOBW  (C5A163), 
NRFA_ECODH  (B1XCV6), NRFA_ECOHS  (A8A7H1), NRFA_ECOK1  (A1AIR1), 
NRFA_ECOL5  (Q0T9X8), NRFA_ECOL6  (Q8CVI1), NRFA_ECOLC  (B1IUI1), 
NRFA_ECOLI  (P0ABK9), NRFA_ECOLU  (B7NG13), NRFA_ECOSE  (B6I5T8), 
NRFA_ECOSM  (B1LPN5), NRFA_ECOUT  (Q1R3J6), NRFA_EDWI9  (C5BES4), 
NRFA_HAEDU  (Q7VNX8), NRFA_HAEI8  (Q4QLL8), NRFA_HAEIN  (P45017), 
NRFA_MANHA  (Q06PW6), NRFA_MANSM  (Q65RI4), NRFA_MARSD  (C6BYZ2), 
NRFA_NITV2  (Q72EF3), NRFA_PARD8  (A6L890), NRFA_PASMU  (Q9CPL4), 
NRFA_PECAS  (Q6D613), NRFA_PECCP  (C6DK80), NRFA_PHOPR  (Q6LSQ7), 
NRFA_PORGI  (Q7MTW1), NRFA_SALA4  (B5F2F2), NRFA_SALAR  (A9MGK5), 
NRFA_SALCH  (Q57GV0), NRFA_SALDC  (B5FRF3), NRFA_SALEP  (B5QZA1), 
NRFA_SALG2  (B5R941), NRFA_SALHS  (B4TEB5), NRFA_SALNS  (B4T1X2), 
NRFA_SALPA  (Q5PJ02), NRFA_SALPB  (A9N1R7), NRFA_SALPC  (C0Q554), 
NRFA_SALPK  (B5BJZ8), NRFA_SALSV  (B4TRK5), NRFA_SALTI  (Q8Z1Q9), 
NRFA_SALTY  (Q8ZKF5), NRFA_SHEAM  (A1S3A0), NRFA_SHEFN  (Q087T3), 
NRFA_SHEON  (Q8EAC7), NRFA_SHEPC  (A4Y382), NRFA_SHESA  (A0KSX7), 
NRFA_SHESH  (A8FRR9), NRFA_SHESM  (Q0HMH8), NRFA_SHESR  (Q0HRB0), 
NRFA_SHESW  (A1RNQ3), NRFA_SHEWM  (B1KFU9), NRFA_SHIB3  (B2TXA4), 
NRFA_SHIBS  (Q31TS5), NRFA_SHIFL  (Q83P93), NRFA_SHISS  (Q3YUR5), 
NRFA_SULDE  (Q9Z4P4), NRFA_VIBPA  (Q87ND9), NRFA_VIBVU  (Q8D8E5), 
NRFA_VIBVY  (Q7MM23), NRFA_WOLSU  (Q9S1E5), NRFB_ECOL6  (P0ABL2), 
NRFB_ECOLI  (P0ABL1), NRFB_HAEIN  (P45016), NRFH_NITV2  (Q72EF4), 
NRFH_WOLSU  (Q9S1E6), NRHAO_KUEST (P0DV45), PCRC_DECAR  (Q47CW8), 
QRCA_NITV2  (P0DOV3), SOXA_PARPN  (O33434), TORC_ECO57  (P58359), 
TORC_ECOLI  (P33226), TORY_ECO57  (P58361), TORY_ECOLI  (P52005), 
TORY_HAEIN  (P44799), Y1237_ARCFU (O29031), YEBS_ECO57  (P0AD04), 
YEBS_ECOLI  (P0AD03), YFCC_ALLVD  (Q06536)
» more

UniProtKB/Swiss-Prot
False negative sequences
5 sequences

CYC31_DESNO (P00136), CYC3_DESAC  (P00137), CYC3_NITV9  (P00132), 
CYCX_DESDA  (P81040), NAPB_SHEON  (Q8EIJ4)
» more

UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

CYC31_NITVL (P81149), CYC32_NITVL (P81151), CYC35_DESAC (P81079)

		
PDB
[Detailed view]
172 PDB

19HC; 1A2I; 1AQE; 1BVB; 1CZJ; 1D4C; 1D4D; 1D4E; 1DXR; 1E39; 1EHJ; 1F22; 1FGJ; 1FS7; 1FS8; 1FS9; 1FT5; 1FT6; 1GU6; 1GWS; 1GX7; 1H21; 1H29; 1HH5; 1IT1; 1J0O; 1J0P; 1JNI; 1JRX; 1JRY; 1JRZ; 1KSS; 1KSU; 1KWJ; 1L3O; 1LJ1; 1LM2; 1M64; 1MDV; 1NEW; 1OFW; 1OFY; 1OGY; 1P2E; 1P2H; 1PRC; 1Q9I; 1QDB; 1QJD; 1QN0; 1QN1; 1QO8; 1R2C; 1VRN; 1WAD; 1WR5; 1Y0P; 2B7R; 2B7S; 2BPN; 2BQ4; 2C1D; 2CDV; 2CTH; 2CVC; 2CY3; 2CYM; 2E80; 2E81; 2EWI; 2EWK; 2EWU; 2FFN; 2I5N; 2J7A; 2JBL; 2K3V; 2OT4; 2OZY; 2P0B; 2PRC; 2RDZ; 2RF7; 2VR0; 2WJM; 2WJN; 2X5U; 2X5V; 2YXC; 2YYW; 2YYX; 2Z47; 2ZO5; 3BNF; 3BNG; 3BNH; 3BNJ; 3CAO; 3CAR; 3D1I; 3D38; 3F29; 3FO3; 3G7F; 3GM6; 3L1T; 3LG1; 3LGQ; 3ML1; 3MMO; 3O5A; 3OWM; 3PRC; 3RKH; 3S7W; 3SCE; 3T6D; 3T6E; 3TOR; 3UBR; 3UU9; 3WMM; 4AC5; 4CAS; 4FAS; 4L38; 4L3X; 4L3Y; 4L3Z; 4N4N; 4N4O; 4Q0T; 4Q17; 4Q1O; 4Q4U; 4Q5B; 4Q5C; 4RKM; 4RKN; 4V8K; 4WJY; 5B5M; 5B5N; 5M7J; 5M7K; 5M7L; 5NJ4; 5O4C; 5O64; 5PRC; 5Y5S; 6ET5; 6HIF; 6M0P; 6M0Q; 6P73; 6PRC; 6QYC; 6R2Q; 6ZHW; 6ZI4; 6ZI5; 6ZI6; 6ZI9; 6ZIA; 6ZID; 7C52; 7PRC; 7Q7P; 7Q7Q; 8WDU; 8WDV
» more