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| Entry: PS51008 |
General information about the entry
| Entry name [info] | MULTIHEME_CYTC |
| Accession [info] | PS51008 |
| Entry type [info] | MATRIX |
| Date [info] |
01-AUG-2004 CREATED;
01-AUG-2004 DATA UPDATE; 13-FEB-2019 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00169 |
Name and characterization of the entry
| Description [info] | Multiheme cytochrome c family profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=15; TOPOLOGY=CIRCULAR; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=15; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8475713; R2=0.0151062; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=375; N_SCORE=7.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=275; N_SCORE=6.0; MODE=1; TEXT='RR'; /DEFAULT: M0=-9; D=-20; I=-20; B0=-200; B1=-200; E0=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B0=0; B1=0; E0=0; E1=0; BI=-105; BD=-105; IE=-105; DE=-105; /M: SY='N'; M= -3, -2, -70, -4, -1, -19, -18, -10, -15, -2, -14, -9, 1, -11, -2, -4, -1, -4, -12, -24, -13, -2; /I: I0=0; I=-1; /M: SY='N'; M= -8, 0, -70, -1, -2, -16, -12, -80, -16, -1, -15, -10, 0, -7, -2, -1, -1, 0, -14, -23, -10, -3; /M: SY='E'; M= -4, 2, -90, 3, 5, -24, -5, -30, -20, -3, -20, -13, 2, -3, 2, -4, 2, -5, -18, -28, -17, 2; /M: SY='A'; M= 1, -8, -70, -8, -1, -19, -17, -30, -8, 1, -9, -5, -5, -10, -3, -3, -4, -4, -3, -25, -13, -3; /M: SY='S'; M= -2, 1, -70, -2, -4, -5, -3, -30, -17, -8, -16, -12, 3, -15, -6, 0, 6, 6, -12, -24, -12, -5; /M: SY='C'; M= *, *, 120, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *; /M: SY='A'; M= 6, -14, -80, -19, -14, -10, -14, -55, 1, -11, -3, -1, -11, -48, -10, -9, -1, 1, 5, -19, -7, -13; /M: SY='S'; M= 2, 8, -80, 7, 1, -21, 0, -58, -20, -6, -20, -15, 7, -42, -1, -9, 11, 7, -15, -29, -14, 0; /M: SY='C'; M= *, *, 120, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *, *; /M: SY='H'; M= *, *, *, *, *, *, *, 120, *, *, *, *, *, *, *, *, *, *, *, *, *, *; /M: SY='N'; M= -1, -1, -70, -4, -4, -18, -25, -10, -13, -3, -14, -7, 3, -16, -10, -4, 3, 0, -4, -28, -14, -3; /M: SY='E'; M= -5, -1, -70, 0, 2, -19, -9, -30, -16, -4, -16, -10, -2, -1, -2, -7, -2, -6, -15, -25, -14, -1; /M: SY='E'; M= -6, -2, -70, -2, 3, -19, -25, -30, -15, -1, -15, -9, -2, -5, 2, -4, -3, -5, -15, -23, -8, 1; /M: SY='P'; M= -3, 1, -70, 2, 1, -17, -8, -30, -20, -5, -20, -15, 0, 3, -6, -9, 2, -2, -16, -26, -15, -3; /I: I0=0; I=-1; /M: SY='E'; M= -1, 0,-110, 1, 6, -20, -10, -30, -19, -1, -18, -11, -1, -4, 4, -5, 0, -5, -17, -24, -12, 4;» more |
Numerical results [info]
| Total number of hits | 156 in 148 different sequences |
| Number of true positive hits | 156 in 148 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 5 |
| Number of 'partial' sequences | 3 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 96.89 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | N_Hulo |
| Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 3 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
148 sequences
C554_CHLAA (P33325 ), C554_NITEU (Q57142 ), CYC32_DESNO (P38554 ), CYC32_DESVH (Q727P6 ), CYC3A_DESAF (P94690 ), CYC3B_DESAF (P94691 ), CYC3_DESDE (P00134 ), CYC3_DESGG (P00133 ), CYC3_DESSA (P00135 ), CYC3_DESVH (P00131 ), CYC3_SHEFN (O33731 ), CYC9_DESDA (Q9RN68 ), CYCB_GEOSK (D7ALQ0 ), CYCB_GEOSL (Q749K5 ), CYCC_GEOSK (D7ALP6 ), CYCC_GEOSL (Q749L1 ), CYCR_ALLVD (O82947 ), CYCR_BLAVI (P07173 ), CYCR_ROSDO (P26278 ), CYCR_RUBGI (P51758 ), CYCR_THETI (D2Z0P5 ), CYCX_NITEU (Q50926 ), FRD2_SHEFN (Q9Z4P0 ), FRDA_SHEFN (Q07WU7 ), FRDA_SHEFR (P0C278 ), FRDA_SHEON (P83223 ), HAO_NITEU (Q50925 ), HDH_KUEST (Q1PW30 ), HMEE_ARCFU (O29747 ), HMWC_DESVH (P24092 ), IMCH_GEOSL (Q747K6 ), MAUG_METME (Q50233 ), MCCA_SHEON (Q8EJI6 ), MCCA_WOLSU (Q7MSJ8 ), NAPB_AZOBR (Q8VU46 ), NAPB_BRAJP (Q8KY07 ), NAPB_CUPNH (P39186 ), NAPB_ECOLI (P0ABL3 ), NAPB_HAEIN (P44654 ), NAPB_PARPN (Q56351 ), NAPB_RHIGA (Q9Z3W3 ), NAPB_RHOS4 (Q53177 ), NAPB_RHOSH (O88160 ), NAPB_SHIFL (P0ABL4 ), NAPB_WOLSU (Q7M963 ), NAPC_ECO57 (P0ABL7 ), NAPC_ECOL6 (P0ABL6 ), NAPC_ECOLI (P0ABL5 ), NAPC_HAEIN (P44655 ), NAPC_PARPN (Q56352 ), NAPC_RHOS4 (Q53178 ), NIRT_PSEST (P24038 ), NIR_THIND (L0DSL2 ), NRFA_ALIF1 (Q5E4J7 ), NRFA_ALIFM (B5FEY0 ), NRFA_ALISL (B6EH98 ), NRFA_ARCB4 (A8ERP8 ), NRFA_BACFN (Q5LI95 ), NRFA_BACFR (Q64ZA7 ), NRFA_BACTN (Q8A7V7 ), NRFA_CITK8 (A8AN26 ), NRFA_DESAD (C6BYZ2 ), NRFA_DESPS (Q6ARF1 ), NRFA_DESVH (Q72EF3 ), NRFA_ECO24 (A7ZUU5 ), NRFA_ECO27 (B7UPN8 ), NRFA_ECO45 (B7MJT8 ), NRFA_ECO55 (B7LB19 ), NRFA_ECO57 (P0ABL0 ), NRFA_ECO5E (B5Z1D1 ), NRFA_ECO7I (B7NSN2 ), NRFA_ECO81 (B7N2T7 ), NRFA_ECO8A (B7M7Y3 ), NRFA_ECOBW (C5A163 ), NRFA_ECODH (B1XCV6 ), NRFA_ECOHS (A8A7H1 ), NRFA_ECOK1 (A1AIR1 ), NRFA_ECOL5 (Q0T9X8 ), NRFA_ECOL6 (Q8CVI1 ), NRFA_ECOLC (B1IUI1 ), NRFA_ECOLI (P0ABK9 ), NRFA_ECOLU (B7NG13 ), NRFA_ECOSE (B6I5T8 ), NRFA_ECOSM (B1LPN5 ), NRFA_ECOUT (Q1R3J6 ), NRFA_EDWI9 (C5BES4 ), NRFA_HAEDU (Q7VNX8 ), NRFA_HAEI8 (Q4QLL8 ), NRFA_HAEIN (P45017 ), NRFA_MANHA (Q06PW6 ), NRFA_MANSM (Q65RI4 ), NRFA_PARD8 (A6L890 ), NRFA_PASMU (Q9CPL4 ), NRFA_PECAS (Q6D613 ), NRFA_PECCP (C6DK80 ), NRFA_PHOPR (Q6LSQ7 ), NRFA_PORGI (Q7MTW1 ), NRFA_SALA4 (B5F2F2 ), NRFA_SALAR (A9MGK5 ), NRFA_SALCH (Q57GV0 ), NRFA_SALDC (B5FRF3 ), NRFA_SALEP (B5QZA1 ), NRFA_SALG2 (B5R941 ), NRFA_SALHS (B4TEB5 ), NRFA_SALNS (B4T1X2 ), NRFA_SALPA (Q5PJ02 ), NRFA_SALPB (A9N1R7 ), NRFA_SALPC (C0Q554 ), NRFA_SALPK (B5BJZ8 ), NRFA_SALSV (B4TRK5 ), NRFA_SALTI (Q8Z1Q9 ), NRFA_SALTY (Q8ZKF5 ), NRFA_SHEAM (A1S3A0 ), NRFA_SHEFN (Q087T3 ), NRFA_SHEON (Q8EAC7 ), NRFA_SHEPC (A4Y382 ), NRFA_SHESA (A0KSX7 ), NRFA_SHESH (A8FRR9 ), NRFA_SHESM (Q0HMH8 ), NRFA_SHESR (Q0HRB0 ), NRFA_SHESW (A1RNQ3 ), NRFA_SHEWM (B1KFU9 ), NRFA_SHIB3 (B2TXA4 ), NRFA_SHIBS (Q31TS5 ), NRFA_SHIFL (Q83P93 ), NRFA_SHISS (Q3YUR5 ), NRFA_SULDE (Q9Z4P4 ), NRFA_VIBPA (Q87ND9 ), NRFA_VIBVU (Q8D8E5 ), NRFA_VIBVY (Q7MM23 ), NRFA_WOLSU (Q9S1E5 ), NRFB_ECOL6 (P0ABL2 ), NRFB_ECOLI (P0ABL1 ), NRFB_HAEIN (P45016 ), NRFH_DESVH (Q72EF4 ), NRFH_WOLSU (Q9S1E6 ), PCRC_DECAR (Q47CW8 ), QRCA_DESVH (P0DOV3 ), SOXA_PARPN (O33434 ), TORC_ECO57 (P58359 ), TORC_ECOLI (P33226 ), TORY_ECO57 (P58361 ), TORY_ECOLI (P52005 ), TORY_HAEIN (P44799 ), Y1237_ARCFU (O29031 ), YEBS_ECO57 (P0AD04 ), YEBS_ECOLI (P0AD03 ), YFCC_ALLVD (Q06536 )» more |
| UniProtKB/Swiss-Prot False negative sequences |
5 sequences
CYC31_DESNO (P00136 ), CYC3_DESAC (P00137 ), CYC3_DESVM (P00132 ), CYCX_DESDA (P81040 ), NAPB_SHEON (Q8EIJ4 )» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
3 sequences
CYC31_DESVU (P81149 ), CYC32_DESVU (P81151 ), CYC35_DESAC (P81079 ) |
| PDB [Detailed view] |
128 PDB
19HC; 1A2I; 1AQE; 1BVB; 1CZJ; 1D4C; 1D4D; 1D4E; 1DXR; 1E39; 1FGJ; 1FS7; 1FS8; 1FS9; 1FT5; 1FT6; 1GU6; 1GWS; 1GX7; 1H29; 1JRX; 1JRY; 1JRZ; 1KSS; 1KSU; 1LJ1; 1M64; 1MDV; 1OFW; 1OFY; 1OGY; 1P2E; 1P2H; 1PRC; 1Q9I; 1QDB; 1QJD; 1QN0; 1QN1; 1QO8; 1R2C; 1VRN; 1WAD; 1Y0P; 2B7R; 2B7S; 2BPN; 2BQ4; 2C1D; 2CTH; 2CVC; 2CYM; 2E80; 2E81; 2I5N; 2J7A; 2JBL; 2K3V; 2OT4; 2OZY; 2P0B; 2PRC; 2RDZ; 2RF7; 2VR0; 2WJM; 2WJN; 2X5U; 2X5V; 2ZO5; 3BNF; 3BNG; 3BNH; 3BNJ; 3CAO; 3CAR; 3D1I; 3D38; 3F29; 3FO3; 3G7F; 3GM6; 3L1T; 3LG1; 3LGQ; 3ML1; 3MMO; 3O5A; 3OWM; 3PRC; 3RKH; 3S7W; 3SCE; 3T6D; 3T6E; 3TOR; 3UBR; 3UU9; 3WMM; 4AC5; 4CAS; 4FAS; 4L38; 4L3X; 4L3Y; 4L3Z; 4N4N; 4N4O; 4Q0T; 4Q17; 4Q1O; 4Q4U; 4Q5B; 4Q5C; 4RKM; 4RKN; 4WJY; 5M7J; 5M7K; 5M7L; 5NJ4; 5O4C; 5O64; 5PRC; 5Y5S; 6ET5; 6PRC; 7PRC » more |
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