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| Entry: PS51039 |
General information about the entry
| Entry name [info] | ZF_AN1 |
| Accession [info] | PS51039 |
| Entry type [info] | MATRIX |
| Date [info] |
01-NOV-2004 CREATED;
01-OCT-2013 DATA UPDATE; 12-AUG-2020 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51039 |
| Associated ProRule [info] | PRU00449 |
Name and characterization of the entry
| Description [info] | Zinc finger AN1-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=44; /DISJOINT: DEFINITION=PROTECT; N1=5; N2=40; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.7740248; R2=0.0057708; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=1253; N_SCORE=8.0; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=1062; N_SCORE=6.9; MODE=1; TEXT='RR'; /DEFAULT: M0=-7; D=-20; I=-20; B1=-300; E1=-300; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='K'; M= 7, -1,-26, 1, -1,-13,-13,-14, -8, 10, -7, 6, -1, -5, -5, -3, 1, 2, -4,-31,-11, -5; /M: SY='N'; M= 5, 7, -8, -3, -4,-14, -9,-13, -7, 2,-12, 1, 21,-11, -1, -4, 2, 5,-10,-42,-26, -5; /M: SY='R'; M= -4, -6,-21, -2, -5,-13,-17,-10,-20, 7,-13, 2, -5, -7, 12, 32, -1, -8, -9,-20, -5, -2; /M: SY='C'; M=-29,-21,158,-31, 7,-22,-39,-49,-19,-29, 1,-20,-10,-31,-21,-19,-19,-20,-18,-18,-55, -2; /M: SY='D'; M= -2, 2,-29, 3, -4, -9, 2, -3,-14, -2, -8,-10, 0, -6, -9,-12, -1, -9,-15,-23,-11, -8; /M: SY='V'; M= 0,-13,-25,-17,-14, 5,-12,-19, 3, -4, -1, -3, -9,-18, -6, -5, -1, 2, 6,-12, 1,-12; /M: SY='C'; M=-23,-18,137,-26, 10,-29,-34,-44,-19,-23, -3,-17,-10,-20,-16,-17,-17,-17,-19,-22,-54, 1; /M: SY='R'; M= -3, -4,-27, -7, -5,-10, 9,-18,-17, 10,-18, -2, 1, -8, 4, 19, -2,-16,-18,-10,-13, -4; /M: SY='K'; M= -2, -6, 6, -7, 13,-17,-17,-22,-19, 16,-14, 7, -4, -1, 6, 8, -3, -7,-16,-21,-19, 9; /M: SY='K'; M= -1, -6,-25, -3, 11,-13,-14,-16,-21, 26,-18, 10, -5, 3, 12, 25, -1,-11,-16,-16, -8, 9; /M: SY='V'; M= 6,-10,-12,-12,-10, -2,-22,-19, 18,-12, 11, 4,-11,-22,-13,-17, -5, 10, 20,-30, 3, -9; /M: SY='G'; M= -1, 1,-32, -5, -8,-22, 34,-21, -9, 0,-15,-11, 2, -3,-12,-14, 1, -9,-20, -8,-19,-11; /M: SY='L'; M= -2,-12, -8,-16,-15, 10,-19,-13, 25,-16, 28, 17,-14,-29,-18,-19,-14, 4, 18,-26, 15,-14; /I: I=-4; MI=0; MD=-22; IM=0; DM=-22; /M: SY='T'; M= 6, -6,-13,-11,-10, -9,-17,-12, 9, -6, 8, 8, -2,-13, -6,-17, 2, 18, 11,-31, -3, -7; D=-4; /I: I=-4; DM=-22; /M: SY='G'; M= 0, 0,-32, -8,-11,-29, 45,-18,-12, -4,-19,-17, 3, 7,-13,-18, 0, -9,-27,-10,-27,-13; /M: SY='F'; M=-13,-21,-28,-30,-21, 43,-24,-17, 1, -6, 15, -5,-12,-26, -9, -6,-10, -8, 5, 0, 24,-19; /I: I=-6; MI=0; MD=-32; IM=0; DM=-32; /M: SY='Q'; M= 1, -1,-22, 2, 5,-12,-16, -6,-14, 6, -9, -2, -4, -4, 7, 2, 0, -2,-12,-24, -6, 4; /M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30, 0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60, 0; /M: SY='R'; M= -3, -8,-22, -6, 1,-13,-15, -6,-22, 12,-20, 1, -5, -6, 21, 40, -1,-13,-16,-15, -8, 4; /I: I=-6; MI=0; MD=-32; IM=0; DM=-32; /M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30, 0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60, 0; /M: SY='G'; M= 1, 2,-31, -4, -8,-22, 45,-23,-11, -2,-16,-13, 2, -9,-14,-15, 5,-11,-23, -5,-23,-12; /M: SY='N'; M= -2, -1,-29, -4, -8,-12, 3, 0,-10, 0,-10, 0, 5,-14, -6, -1, -2, -8,-12,-22,-11, -9; /M: SY='V'; M= -3,-13,-20,-14,-16, 0,-21,-14, 9, -6, 9, 8,-10,-20, -7, 0, -7, 5, 13,-21, 9,-13; /M: SY='F'; M=-24,-29,-35,-38,-33, 78,-29,-21, -1,-11, 24,-15,-18,-35,-25, -8,-13,-16, 10, 18, 45,-33; /M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30, 0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60, 0; /M: SY='G'; M= 5, -5,-23, -8, -8, -5, 9,-16, -2, -3, -1, -2, -4,-18,-11,-13, 2, -4, -6,-17,-12,-11; /M: SY='K'; M= 4, 0,-20, 3, 6,-15,-12,-15,-12, 9, -8, 2, -4, -5, 3, 1, 4, 1, -7,-25, -9, 4; /M: SY='H'; M=-20,-20,-50,-20, 0,-30,-30,140,-20,-20,-10, 20,-10, 10, 0,-10,-10,-20,-30,-50, 0, 0; /M: SY='R'; M= -9,-18,-23,-11,-10,-12,-14, -2,-23, 5,-18, 0,-16,-10, 21, 59, -7,-25,-10, -6, -3, -3; /M: SY='Y'; M=-25,-21,-33,-14,-16, 28,-26, 3, 2,-15, 30, 3,-27,-24,-15,-10,-18, -8, 7, 11, 54,-16; /M: SY='P'; M= 1,-12,-29, -5, 5,-27, -8, 0,-20, 8,-20,-20,-17, 54, -1, -8, 0, 4,-22,-29,-17, -2; /M: SY='E'; M= 2, 10, -9, 22, 32,-37,-12, -8,-26, 12,-12,-13, -2, 10, 8,-10, 2, -9,-23,-24,-19, 24; /M: SY='N'; M= 7, 5,-22, 3, 1,-17,-10,-16, -2, 4, -9, 1, 9,-12, 5, -3, 0, 0, -4,-33,-17, 0; /M: SY='H'; M=-20,-20,-50,-20, 0,-30,-30,140,-20,-20,-10, 20,-10, 10, 0,-10,-10,-20,-30,-50, 0, 0; /M: SY='D'; M= 3, 17,-25, 22, -3,-21, 7,-20,-15, -3,-11,-17, 11,-14,-11,-14, 5, -3,-13,-28,-17, -8; /M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30, 0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60, 0; /M: SY='P'; M= 3, -2,-27, -3, -7,-25, 11,-13,-11, -3,-17,-19, -2, 19, -9,-16, 8, 8,-16,-27,-20,-10; /I: I=-5; MD=-27; /M: SY='F'; M=-10,-15,-25,-18, -8, 25,-12,-15, -6, -1, 7, -9,-11,-16,-10, -8, -6,-13, -1, 5, 15,-10; D=-5; /I: I=-5; MI=0; MD=-27; IM=0; DM=-27; /M: SY='D'; M= 2, 26,-24, 47, 10,-38, -2,-17,-29, 4,-12,-18, 5, -7, -3, -5, 1,-10,-19,-29,-15, 4; /M: SY='Y'; M=-19,-23,-38,-19,-19, 24,-22, -9, 4,-10, 18, -2,-24,-23,-13, -8,-14, -9, 11, 18, 42,-19; /M: SY='K'; M= -2,-10,-24, -9, 7,-10,-14,-14,-12, 19,-13, 11, -9, -4, 6, 17, -6,-12,-10, -9, -4, 4; /M: SY='A'; M= 10, 1,-21, -4, -4,-16, -3,-15, -5, -1,-13, -3, 8,-13, 7, 2, 4, 4, -5,-32,-21, -2; /M: SY='H'; M= 0, -5,-29, -1, -1,-17,-13, 5,-10, 0, -7, 4, -6, -9, -3, -5, -2, -5, -7,-17, -5, -3; /M: SY='G'; M= 8, -3,-28, -4, 2,-30, 30,-13,-13, -1,-17,-12, -5, 6, -4,-14, 2,-10,-21,-14,-28, -1; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 78 in 62 different sequences |
| Number of true positive hits | 78 in 62 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 2 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 97.50 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | N_Hulo |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 2 |
| Feature key [info] | ZN_FING |
| Feature description [info] | AN1-type |
| Version [info] | 4 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
62 sequences
CUZ1_YEAST (P53899 ), SAP10_ARATH (Q9STJ9 ), SAP10_ORYSJ (Q69LE0 ), SAP11_ARATH (Q8VZ42 ), SAP11_ORYSJ (Q84PD8 ), SAP12_ARATH (Q67YE6 ), SAP12_ORYSJ (Q6Z541 ), SAP13_ARATH (Q9SCM4 ), SAP13_ORYSJ (Q5JLA7 ), SAP14_ORYSJ (Q852K8 ), SAP15_ORYSJ (Q0DJC7 ), SAP16_ORYSJ (Q0D5B9 ), SAP17_ORYSJ (Q6H595 ), SAP1_ARATH (Q6NNI8 ), SAP1_ORYSI (A2Z2J6 ), SAP1_ORYSJ (A3C039 ), SAP2_ARATH (Q8H0X0 ), SAP2_ORYSJ (Q942F8 ), SAP3_ARATH (Q9ZNU9 ), SAP3_ORYSJ (Q5JN07 ), SAP4_ARATH (Q9SJM6 ), SAP4_ORYSJ (Q6H7P8 ), SAP5_ARATH (Q9LHJ8 ), SAP5_ORYSJ (Q6H754 ), SAP6_ARATH (Q94B40 ), SAP6_ORYSJ (Q852K5 ), SAP7_ARATH (Q9SZ69 ), SAP7_ORYSJ (Q852K6 ), SAP8_ARATH (Q3EA33 ), SAP8_ORYSI (A2YEZ6 ), SAP8_ORYSJ (A3BDI8 ), SAP9_ARATH (O49663 ), SAP9_ORYSJ (Q7Y1W9 ), SMBP2_HUMAN (P38935 ), SMBP2_MESAU (Q60560 ), SMBP2_RAT (Q9EQN5 ), TMC1_YEAST (Q08422 ), Y8260_DICDI (Q55GW8 ), ZFAN1_HUMAN (Q8TCF1 ), ZFAN1_MOUSE (Q8BFR6 ), ZFAN3_HUMAN (Q9H8U3 ), ZFAN3_MOUSE (Q497H0 ), ZFAN3_RAT (Q5U2M7 ), ZFAN3_XENLA (Q66J85 ), ZFAN4_HUMAN (Q86XD8 ), ZFAN4_MOUSE (D3Z3C6 ), ZFAN5_HUMAN (O76080 ), ZFAN5_MOUSE (O88878 ), ZFAN5_RAT (B5DF11 ), ZFAN6_BOVIN (Q3SZY7 ), ZFAN6_HUMAN (Q6FIF0 ), ZFAN6_MOUSE (Q9DCH6 ), ZFAN6_PONAB (Q5R7S6 ), ZFAN6_RAT (Q6DGF4 ), ZFAND_DICDI (Q55BU1 ), ZFN2A_HUMAN (Q8N6M9 ), ZFN2A_MOUSE (Q9JII7 ), ZFN2A_PONAB (Q5R966 ), ZFN2A_RAT (Q5U2P3 ), ZFN2B_HUMAN (Q8WV99 ), ZFN2B_MOUSE (Q91X58 ), ZFN2B_RAT (Q4KLG9 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
2 sequences
SMBP2_MOUSE (P40694 ), YHM5_SCHPO (O94338 ) |
| PDB [Detailed view] |
9 PDB
1WFE; 1WFH; 1WFL; 1WFP; 1WG2; 1WYS; 1X4V; 1X4W; 5IJ4 |
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