PROSITE entry PS51056
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General information about the entry
| Entry name [info] | ITAM_2 |
| Accession [info] | PS51056 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JAN-2005 CREATED;
10-MAY-2017 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51055 |
| Associated ProRule [info] | PRU00379 |
Name and characterization of the entry
| Description [info] | ITAM motif hantavirus type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=24; /DISJOINT: DEFINITION=PROTECT; N1=3; N2=22; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.3976821; R2=0.0112796; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1511.6481934; R2=0.7098765; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=1029; H_SCORE=2242; N_SCORE=13.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=453; H_SCORE=1833; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-9; D=-20; I=-20; B1=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='W'; M=-15,-19,-40,-19, -9,-11,-20,-20,-25, 16,-25,-15,-19,-20, -5, 6,-25,-20,-25, 62, 9, -5; /M: SY='R'; M= 14,-10,-20,-15, -5,-20,-10,-10,-20, 11,-15,-10, -5,-15, 0, 26, 0, -5,-10,-20,-15, -5; /M: SY='G'; M=-10,-10,-30,-10,-10,-25, 26,-10,-35, 4,-25,-15, 0,-20, -5, 24, -5,-15,-25,-20,-20,-10; /M: SY='C'; M=-10,-25, 52,-30,-25, -5,-30,-25, -6,-30, 14, -1,-25,-35,-25,-25,-20,-10, 0,-35,-15,-25; /M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20, 0,-10, 0, 0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20; /M: SY='R'; M=-20,-10,-30,-10, 0,-20,-20, 0,-30, 30,-20,-10, 0,-20, 10, 70,-10,-10,-20,-20,-10, 0; /M: SY='T'; M= 0, 0,-10,-10,-10,-10,-20,-20,-10,-10,-10,-10, 0,-10,-10,-10, 20, 50, 0,-30,-10,-10; /M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20, 0,-20; /M: SY='N'; M= 0, 19,-15, 10, 0,-20, 0, 0,-20, -5,-30,-20, 34,-15, 0, -5, 25, 10,-20,-40,-20, 0; /M: SY='V'; M= -5,-30,-15,-30,-25, 5,-30,-25, 25,-25, 29, 15,-30,-30,-25,-20,-20, -5, 31,-25, -5,-25; /M: SY='F'; M=-20,-30,-20,-40,-30, 80,-30,-20, 0,-30, 10, 0,-20,-30,-40,-20,-20,-10, 0, 10, 30,-30; /M: SY='R'; M=-20,-10,-30,-10, 0,-20,-20, 0,-30, 30,-20,-10, 0,-20, 10, 70,-10,-10,-20,-20,-10, 0; /M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20, 0,-10, 0, 0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20; /M: SY='R'; M=-15, -5,-30, -5, 5,-25,-20, -5,-30, 40,-25,-10, 0,-15, 10, 51,-10,-10,-20,-20,-10, 5; /M: SY='S'; M= 10, 0,-10, 0, 0,-20, 0,-10,-20,-10,-30,-20, 10,-10, 0,-10, 40, 20,-10,-40,-20, 0; /M: SY='R'; M=-20,-10,-30,-10, 0,-20,-20, 0,-30, 30,-20,-10, 0,-20, 10, 70,-10,-10,-20,-20,-10, 0; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='F'; M=-20,-25,-25,-30,-25, 56,-30, -1, 0,-20, 5, 0,-20,-30,-25,-15,-20,-10, -5, 20, 54,-25; /M: SY='I'; M= -5,-30,-20,-35,-30, 0,-35,-30, 40,-25, 15, 15,-25,-25,-25,-25,-15, -5, 40,-25, -5,-30; /M: SY='G'; M= -5,-20,-25,-20,-20,-11, 21,-20,-11,-25, 9, -1,-15,-25,-20,-20,-15,-15,-11,-20,-15,-20; /M: SY='L'; M= -5,-15,-15,-20,-15, 0,-25,-20, 5,-20, 21, 5,-15,-20,-15,-15, -6, 19, 5,-25, -5,-15; /M: SY='M'; M= -5,-25,-15,-30,-25, 0,-25,-15, 25,-15, 15, 34,-25,-25,-15,-15,-15, -5, 31,-25, -5,-20; /M: SY='W'; M=-20,-40,-50,-40,-30, 10,-20,-30,-20,-20,-20,-20,-40,-30,-20,-20,-40,-30,-30,150, 30,-20; /M: SY='C'; M= -5,-10, 57,-20,-20,-15,-25,-25,-20,-20,-15,-15,-10,-25,-20,-20, 5, 19, -5,-40,-20,-20; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 18 in 18 different sequences |
| Number of true positive hits | 18 in 18 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | V_Lesaux |
| Taxonomic range [info] | Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | DOMAIN |
| Feature description [info] | ITAM |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
18 sequences
GP_ANDV (Q9E006), GP_BCCV (P0DTJ0), GP_DOBV (Q806Y7), GP_HANTB(P28728), GP_HANTH(P16493), GP_HANTL(P16853), GP_HANTV(P08668), GP_NYV (Q83887), GP_PHV (P27315), GP_PUUMG(P21400), GP_PUUMK(P41265), GP_PUUMP(P41266), GP_PUUMS(P27312), GP_SEOU8(P33455), GP_SEOUR(P28729), GP_SEOUS(P17880), GP_SINV (Q89905), GP_TULV (P0DTJ1)» more
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