PROSITE

Home | Contact

	Home ScanProsite ProRule Documents Downloads Links Funding
	Entry: PS51080

General information about the entry

Entry name [info]

CTF_NFI_2

Accession [info]

PS51080

Entry type [info]

MATRIX

Date [info]

01-FEB-2005 CREATED;
10-MAY-2017 DATA UPDATE;
13-NOV-2019 INFO UPDATE.

PROSITE Doc. [info]

PDOC00361

Associated ProRule [info]

PRU00436

Name and characterization of the entry

Description [info]

CTF/NF-I DNA-binding domain profile.

Matrix / Profile [info]

/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=194;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=189;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.2063859; R2=0.0054456; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=-23087.5253906; R2=42.4752464; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1340; H_SCORE=33829; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=973; H_SCORE=18241; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-6; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;

...

                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='Y';  M=-40,-30,-60,-10,-20, 30,-30,  0,-10,-10, 30,-10,-40,-20,-10,  0,-20,-10, 10, 50, 90,-20;
/M: SY='S';  M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='S';  M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='P';  M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='C';  M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30,  0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60,  0;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='T';  M= 10,  0,-20,-10,-20,-20,-20,-20,  0,-10,  0,  0, 10,  0,  0,-30, 20, 50, 10,-50,-10,-10;
/M: SY='Q';  M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='D';  M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='F';  M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='H';  M=-20,-20,-50,-20,  0,-30,-30,140,-20,-20,-10, 20,-10, 10,  0,-10,-10,-20,-30,-50,  0,  0;
/M: SY='P';  M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='F';  M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='I';  M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='P';  M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='H';  M=-20,-20,-50,-20,  0,-30,-30,140,-20,-20,-10, 20,-10, 10,  0,-10,-10,-20,-30,-50,  0,  0;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='F';  M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='Y';  M=-40,-30,-60,-10,-20, 30,-30,  0,-10,-10, 30,-10,-40,-20,-10,  0,-20,-10, 10, 50, 90,-20;
/M: SY='T';  M= 10,  0,-20,-10,-20,-20,-20,-20,  0,-10,  0,  0, 10,  0,  0,-30, 20, 50, 10,-50,-10,-10;
/M: SY='W';  M=-50,-50,-20,-40,-10, 10, 10,-50,-30,-20,-20,-30,-70,-30,-10,  0,-30,-50,-30,200, 50,-10;
/M: SY='F';  M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='N';  M=  0, 40,-10, 10,-10,-10,  0,-10,  0,  0,-20,  0, 80,-30,-10,-20,  0, 10,-20,-70,-40,-10;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='Q';  M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='Y';  M=-40,-30,-60,-10,-20, 30,-30,  0,-10,-10, 30,-10,-40,-20,-10,  0,-20,-10, 10, 50, 90,-20;
/M: SY='F';  M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='H';  M=-20,-20,-50,-20,  0,-30,-30,140,-20,-20,-10, 20,-10, 10,  0,-10,-10,-20,-30,-50,  0,  0;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='M';  M= 10,-20,-20,-30,-10,-20,-20, 20, 10, 20, 20, 60,  0,-40,-10,  0,-20,  0,  0,-30,-10,-10;
/M: SY='S';  M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='D';  M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='D';  M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='G';  M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='P';  M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='Q';  M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='W';  M=-50,-50,-20,-40,-10, 10, 10,-50,-30,-20,-20,-30,-70,-30,-10,  0,-30,-50,-30,200, 50,-10;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='S';  M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='D';  M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='I';  M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='P';  M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='C';  M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30,  0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60,  0;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='D';  M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='F';  M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='S';  M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='I';  M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='T';  M= 10,  0,-20,-10,-20,-20,-20,-20,  0,-10,  0,  0, 10,  0,  0,-30, 20, 50, 10,-50,-10,-10;
/M: SY='G';  M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='P';  M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='G';  M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='C';  M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30,  0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60,  0;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='S';  M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='N';  M=  0, 40,-10, 10,-10,-10,  0,-10,  0,  0,-20,  0, 80,-30,-10,-20,  0, 10,-20,-70,-40,-10;
/M: SY='P';  M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='D';  M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='Q';  M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='G';  M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='M';  M= 10,-20,-20,-30,-10,-20,-20, 20, 10, 20, 20, 60,  0,-40,-10,  0,-20,  0,  0,-30,-10,-10;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='I';  M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='D';  M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='C';  M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30,  0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60,  0;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='Q';  M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='D';  M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='W';  M=-50,-50,-20,-40,-10, 10, 10,-50,-30,-20,-20,-30,-70,-30,-10,  0,-30,-50,-30,200, 50,-10;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='D';  M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='M';  M= 10,-20,-20,-30,-10,-20,-20, 20, 10, 20, 20, 60,  0,-40,-10,  0,-20,  0,  0,-30,-10,-10;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='I';  M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='F';  M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='G';  M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='I';  M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='P';  M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='S';  M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='T';  M= 10,  0,-20,-10,-20,-20,-20,-20,  0,-10,  0,  0, 10,  0,  0,-30, 20, 50, 10,-50,-10,-10;
/M: SY='D';  M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='G';  M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='Q';  M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='C';  M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30,  0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60,  0;
/M: SY='G';  M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='H';  M=-20,-20,-50,-20,  0,-30,-30,140,-20,-20,-10, 20,-10, 10,  0,-10,-10,-20,-30,-50,  0,  0;
/M: SY='P';  M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='C';  M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30,  0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60,  0;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='Q';  M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='P';  M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='H';  M=-20,-20,-50,-20,  0,-30,-30,140,-20,-20,-10, 20,-10, 10,  0,-10,-10,-20,-30,-50,  0,  0;
/M: SY='H';  M=-20,-20,-50,-20,  0,-30,-30,140,-20,-20,-10, 20,-10, 10,  0,-10,-10,-20,-30,-50,  0,  0;
/M: SY='I';  M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='G';  M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='K';  M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='D';  M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='Y';  M=-40,-30,-60,-10,-20, 30,-30,  0,-10,-10, 30,-10,-40,-20,-10,  0,-20,-10, 10, 50, 90,-20;
/M: SY='L';  M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='Y';  M=-40,-30,-60,-10,-20, 30,-30,  0,-10,-10, 30,-10,-40,-20,-10,  0,-20,-10, 10, 50, 90,-20;
/M: SY='F';  M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='V';  M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='R';  M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='D';  M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='A';  M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='E';  M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='Q';  M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='S';  M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='G';  M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='S';  M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='P';  M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/I:         E1=0; IE=-105; DE=-105;

» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_10 which contains 561'356 sequence entries.

Total number of hits

18 in 18 different sequences

Number of true positive hits

18 in 18 different sequences

Number of 'unknown' hits

Number of false positive hits

Number of false negative sequences

Number of 'partial' sequences

Precision (true positives / (true positives + false positives))

100.00 %

Recall (true positives / (true positives + false negatives))

100.00 %

Comments [info]

Matrix type [info]

protein_domain

Scaling database [info]

reversed

Author [info]

CJA_Sigrist

Taxonomic range [info]

Eukaryotes

Maximum number of repetitions [info]

Feature key [info]

DNA_BIND

Feature description [info]

CTF/NF-I

Version [info]

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

18 sequences

NFIA_CHICK  (P17923    ), NFIA_HUMAN  (Q12857    ), NFIA_MOUSE  (Q02780    ),

NFIA_RAT    (P09414    ), NFIB_BOVIN  (Q0VCL6    ), NFIB_CHICK  (P17924    ), 
NFIB_HUMAN  (O00712    ), NFIB_MESAU  (P13622    ), NFIB_MOUSE  (P97863    ), 
NFIC_CHICK  (P17926    ), NFIC_HUMAN  (P08651    ), NFIC_MOUSE  (P70255    ), 
NFIC_PIG    (P21999    ), NFIL_PIG    (P14057    ), NFIX_CHICK  (Q90932    ), 
NFIX_HUMAN  (Q14938    ), NFIX_MESAU  (P13623    ), NFIX_MOUSE  (P70257    )

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

SIB Swiss Institute of Bioinformatics | Disclaimer

Back to the Top