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PROSITE entry PS51130


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51130
Entry name [info] PDXT_SNO_2
Accession [info] PS51130
Entry type [info] MATRIX
Date [info] 01-JUN-2005 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00950
Associated ProRule [info] PRU00480

Name and characterization of the entry

Description [info] PdxT/SNO family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=194;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=189;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.2234676; R2=0.0111959; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=472; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=293; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-33; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 252 in 252 different sequences
Number of true positive hits 252 in 252 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
252 sequences

PDX2_ARATH  (Q8LAD0), PDX2_DICDI  (Q54J48), PDX2_PLABE  (Q4PJX5), 
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PDB
[Detailed view]
11 PDB

1Q7R; 1R9G; 2ABW; 2ISS; 2NV0; 2NV2; 2YWD; 2YWJ; 4ADS; 4WXY; 8U7J