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| Entry: PS51137 |
General information about the entry
| Entry name [info] | VM |
| Accession [info] | PS51137 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JUN-2005 CREATED;
10-MAY-2017 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51137 |
| Associated ProRule [info] | PRU00483 |
Name and characterization of the entry
| Description [info] | VM domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=38; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=35; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8932132; R2=0.0075220; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3012.3496094; R2=3.5786853; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=879; H_SCORE=6158; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=613; H_SCORE=5206; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-9; D=-20; I=-20; B1=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='G'; M= 6, -4,-19, -4, -9,-24, 31,-14,-29,-14,-30,-20, 6,-14, -9,-14, 22, 2,-19,-31,-24, -9; /M: SY='Y'; M=-14,-26,-30,-31,-26, 13,-36, -8, 28,-21, 11, 11,-20,-24,-16,-21,-20,-10, 12, 2, 36,-26; /M: SY='P'; M=-10,-20,-40,-10, 0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10; /M: SY='A'; M= 38, -7,-10,-14, -7,-20, 0,-17,-13,-10,-16,-13, -4,-10, -7,-17, 19, 6, -3,-26,-20, -7; /M: SY='P'; M=-10,-20,-40,-10, 0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10; /M: SY='P'; M=-10,-20,-40,-10, 0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='P'; M=-10,-20,-40,-10, 0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10; /M: SY='K'; M= -6, 0,-21, -4, 1,-21,-20,-14,-21, 23,-21,-10, 0,-10, 1, 12, 3, 17,-11,-24,-10, 1; /M: SY='N'; M=-10, 40,-20, 20, 0,-20, 0, 10,-20, 0,-30,-20, 60,-20, 0, 0, 10, 0,-30,-40,-20, 0; /M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20, 0,-10, 0, 0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20; /M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20, 0,-20; /M: SY='F'; M=-20,-30,-20,-40,-30, 80,-30,-20, 0,-30, 10, 0,-20,-30,-40,-20,-20,-10, 0, 10, 30,-30; /M: SY='S'; M= 10, 0,-10, 0, 0,-20, 0,-10,-20,-10,-30,-20, 10,-10, 0,-10, 40, 20,-10,-40,-20, 0; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='Q'; M=-10, 0,-30, 0, 20,-40,-20, 10,-20, 10,-20, 0, 0,-10, 60, 10, 0,-10,-30,-20,-10, 40; /M: SY='P'; M=-10,-20,-40,-10, 0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10; /M: SY='N'; M= -4, 28,-17, 14, 0,-20, 0, 4,-20, -3,-30,-20, 46,-17, 0, -3, 19, 6,-24,-40,-20, 0; /M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20, 0,-20; /M: SY='A'; M= 33, -7,-16,-14, -1,-26, -6,-11,-13, -4,-13, -7, -7,-10, 10,-11, 7, -3, -9,-20,-17, 4; /M: SY='P'; M=-10,-20,-40,-10, 0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10; /M: SY='V'; M= 22,-21,-10,-26,-21, -9,-17,-26, 12,-16, 1, 1,-21,-21,-21,-20, -1, 0, 28,-26,-14,-21; /M: SY='P'; M=-10,-20,-40,-10, 0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='A'; M= 28, -4,-10, -9, -4,-20, 0,-14,-16,-10,-21,-16, 1,-10, -4,-14, 27, 11, -6,-31,-20, -4; /M: SY='A'; M= 23, -6,-19,-11, 3,-29, -9, -7,-14, -1,-14, -6, -6,-10, 21, -7, 6, -4,-13,-20,-16, 12; /M: SY='P'; M=-10, -7,-36, 3, 27,-30,-20,-11,-24, -1,-26,-20,-11, 50, 3,-11, -6,-10,-30,-30,-26, 12; /M: SY='A'; M= 50,-10,-10,-20,-10,-20, 0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10, 0, 0,-20,-20,-10; /M: SY='P'; M=-10,-14,-37, -7, 6,-33,-20,-11,-20, -4,-27,-14,-14, 61, 10,-11, -7,-10,-30,-27,-24, 4; /M: SY='A'; M= 28, -4,-10, -9, -4,-20, 0,-14,-16,-10,-21,-16, 1,-10, -4,-14, 27, 11, -6,-31,-20, -4; /M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20, 0,-10, 0, 0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20; /M: SY='G'; M= 0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20, 0,-20,-20,-20, 0,-20,-30,-20,-30,-20; /M: SY='S'; M= 10, 0,-10, 0, 0,-20, 0,-10,-20,-10,-30,-20, 10,-10, 0,-10, 40, 20,-10,-40,-20, 0; /M: SY='A'; M= 50,-10,-10,-20,-10,-20, 0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10, 0, 0,-20,-20,-10; /M: SY='G'; M= -5,-10,-30,-10,-15,-28, 48,-15,-38, -8,-28,-18, 0,-20,-13, 2, -2,-18,-28,-20,-25,-15; /M: SY='A'; M= 50,-10,-10,-20,-10,-20, 0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10, 0, 0,-20,-20,-10; /M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20, 0,-10, 0, 0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20; /M: SY='T'; M= 6, 0,-10, -4, -4,-16, -9,-14,-16,-10,-21,-16, 6,-10, -4,-10, 31, 33, -6,-36,-16, -4; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 14 in 14 different sequences |
| Number of true positive hits | 14 in 14 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 3 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 82.35 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | DOMAIN |
| Feature description [info] | VM |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
14 sequences
VTU1_DROME (P11449 ), VTU2_DROME (P13238 ), VTU3_DROME (Q06521 ), VTU4_DROAN (B3MMW0 ), VTU4_DROER (B3N4J9 ), VTU4_DROMA (A4UM12 ), VTU4_DROME (Q9VKI3 ), VTU4_DROPE (B4G9V0 ), VTU4_DROPS (Q29M30 ), VTU4_DROSE (A4UM15 ), VTU4_DROSI (A4UM14 ), VTU4_DROSN (A4UM16 ), VTU4_DROTE (A4UM19 ), VTU4_DROYA (B4P184 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
3 sequences
V15A1_AEDAE (Q16KE2 ), V15A2_AEDAE (P19425 ), V15A3_AEDAE (Q16G12 ) |
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